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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0038200 |
| Transcript ID | LotjaGi1g1v0038200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27170.1 transmembrane receptors / ATP binding protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8H1|G7K8H1_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0038200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5320016..5326412) extracted from Lotus japonicus Gifu genome v1.2.
GGCTTAACCAAAATCAATCACTCTGAACTGATCTTTGACTTTCTAGCTAGTTAACTGGTTCTGGTCATTTCCAAAAAGAG TAGAAAGAAAGATCTCTATCTTCATTTGCTTGCTGCCTGCAACATCTTGGAGTGAGTTAAACAAACTTTCATATTCACCT CACCTCCCTAATTCTATTTCTCTTTTTATCTCTATCGTTTTATTGACGCTGGTTGGTTCTGTGTACTATGCTATTCCAAC ATTTTCTATCATTATACATACTTAGCTCTATCTTAATTTATGTCAACAGTTTGGTTTAAGCATCAAGACTTAAGCAAATT CCAAAAGGAGTAGAAAGAAAGATCTCTGCTTATCTAAAAAAAAAAAAAAAGAAAGAAAGATCTCCATCTTGATTTGGTGC CAGCTGCCTGCAACATTGATCTTGGAGTGAGTTCAACTTCCATTCACCTGGCCTCCTTAATTAACTCTAGCTATATCTTT TTTCATATCAAACATTTCCCTTTTATTACTATTACTGGTTCTGTTTACTATGGCATTCCAGCAAATTTTTATATATTTCA CATCAAAGATCATGCTTAATTTATTCTTTTCCTGCCTGCAATAACATGAATCTAAAATGGTCTCTCACTTAAGCCCCTAA ATCTAAAATGGTCTTCAGATATATTTTTGATAGCTTTTAGTCCTTAAATAAACATTTTTTGTTTTAAAAATGTTCATGTG ACGTCATAATGTTTATTTGACAATTTTATTTACTCGATCATCTGCCCATATTACAATTCTAATCATATGTAGGTTGTTTA TATGGATTTTTCAATCAGCTTTAATTCTTCAAAATTCTTTTTTTATCAACTTTGGTCCTTCTCTTCCTCCTCCCTCCTCA AGCCACCACCTAAGCTCCACACCCACCACCCAGCCACCGCACAACCTCCACATCCTTCCCTCACCTCAACAAATTAATTC ATACACTTCTACACTACTCGTACGTAAATGCTTATCTGCATATATAATTGATTTTAACTTTAGAAGATTTCTAAACATAC ACATATTTGTCTATGATTAATTCGTGAAGTAATCACATATTTAAAATAAAGACAATTACTGAAATATGTTTTGGATATAT TTTGAATTGTTTGGGTATGCTTTAGGGAAAGGCAACGGAATTTAAGAGGCTCTTTGGTTTACTAGTATTTCCAATTTTTC ACTTTTTCAATAAAAATATAAAATAAAGCTCAAACATGTTTGGTTCATTAGCATGAAATTGGCTGACTTGATGACTTTTC ACTGACGAAAAATTCTGAGGACAATTCCTATTGGTTCAGTTAGAAGATAGAAGAAACAAAGTCGTTCATTGACGTCCTAT CTCAAGATTTGGGTCTTCATTATGGAGTCGAAGCCACATCTAGACGATGTACGATATGCAAAGTTTTGGAGCCTGCAACT TGATGATGATGTAAGTTAAACTTTCATTAACCTTTTTAATTCTACATCCTTTTTTTTATATCAAACATTTTCCTTTTATT GGCACTAGCTATATATTATACTGATTATGCGAACTATGTTATTCCAGCAAAATTTTATGTATTTCACATCATTTCCTTCC GTATCGAATTACTAATGTTAGATCTAGCTTTCCAAAAACAACATAGGTATATATTTTTCATATTTTTTGAACATGCACTT AAATATAAGCGAAGGCATGCATATATATAATTGTATCCGATTATAATTATGGTTTGGTGAAAAAAAAATGAATTATTTTC CTTTGCTGGCCAACTAGTTTCAAAATGGTACATCAAATTTGACGATGGAGCAGGAATCCAAGACTTGTTTTTATCTACAA GTCGTACGTGAATATGTGGAGCTGAGTTTCAAGTCAAAGGAAGACTGTACAATTGATAAAGATTCAATTTGGTCACATCC AAATGAAAAATTTGATGAAGTTTTGGAGTGGATAAAAGAAGTGGATAAATTCATGGGTAAGGCCACAAAGGAAATGTGCG AAATAAGTCTTGAGACTGATTCGTATTGGTGCAAGAAGATAATATCAAGAATAAGAGATCTACGTGCCAAACGTGGCCCC AATTTTACTTTCCAAATAGTAAGCTCATCTGAGGTGATAACACCACTTTCCTCACGTGAAAAGCTCTTCTGTGAACTAAT GTTGCTGGGTCACATACGTTTAGCTGTGGTGCATGCTCTTGAAATATCAAAGGATGATGATGATAAATTTAATGAATATC TTCAGGAGTGGAAAGATGAAGTGGATGATTTCTTGTCTGGGTTGAACGAGCATTTTAAAGTTGAATTTGATCCTGAGACT AATTCTGGTTGGTACAGTAAGAAGATAGCAAAAGCAAGGACCTTAATTGCCAAATGTGAACCAGCACTTTCTCTCCAATT TCAAGATGTGGGATCTGCTTCCTCAATGAATATTATGTTTCATGAAAAACTCTGCTATGAAATAAGGTTGTTGATTAATT TGAAATTTGTTGACATAAAGGCTGCTCGTGATATGCCAATCAATGATCATGATCTACAAATCCTTTTCAAGAAAAGACTT CAGGAGTAGATAAATGAAGTGAATAAATTCTTAACAGAGATCAGCCTGCAATTTGGAGAAAAGAATCTTGACAAGAGTTC CAATTGGTACCAAAACAAGATAGCAGAATCAAGGACGTTAATTGCCAAACGTTATTCAGCATTTCCCCTCCGCTGTGAAG ATGTGGGATATACAAAGAAGCAATATCATATTTTTCTCAGTTTTGAAGGAAAAGATACTCAATGTCTTCATGGACGATCA AGGGTTAGAGAGAGAGGGCTCTATTTCACAAGTTCTAATCGGGGCAATTGAAAACTCACAACTTTCAATTATTATTTTCT CGAAAAACTTTGCAAATTCTACCGGGTGTTTGGATGAAGTTGTTAAGATTCTTGAGTGTAAAAAGGAGAAAAATCAGCTA GTTTGGCCTGTCTTTTATAAAGTGGAGCCCTCCGACGTGAGGTATCAAAATAAAAATTATAGAGAGGCTATGGCCAAACA TGAAACAAGATTTGGAAAAGAGATGGTGAAGAACTGGAGATCAGCTTTGCACGAAGTCAGTGGCTTCAATGCTTTCCCAT ACAAGAAAGACAGTGGGTACGTTATATGCTTAATTTCAACTACTTTTATTTTAACATATAACTAATGTGATAAATTGCCT TGCTTTATCCGAAGGTCTTGAATTTTTAAAAATAAATTTTGCTTTATTTTGATATGCTTTGTATATGATTTATGTAGGTA TGAAAGTGATTTTATTCAAAGTATCGTAAAAGCTGCCACCAAAATTAGAGATGGTTCGTAAGCATGGATATGGTGACAAT AAGAAAGACTGCATCTTCAGAGTGTTTGCTCTCAACTGTTGGTGTTGGATTGAAGTTGTTTTGTATTGGTACGTAATAGG TGTTTTTTCTGTCATGTTTTAAACCCAAGCAACTGATATATCCTGCCTGCCACTTTGGAGCATAAAATTGGGAAACATCC ACATATTTCATTCTTATGATGCCACATCAAAAGCGATTCACCTGAATCTTGTTTACAAGTTGTGATACATTCACACTCCT CTTTCTTTTACAATCTATTTTCACCTTTTTTCCTTCCTATCTCTCTCTGCATTTCCTATTACATCACATATCATGTCACT CATTTCTCTTTCTATTCTTACAATTTTACTAGGGTGGAGGTGGATTTGGAATCTGTATGCAAACTTTTCCCTTGTGAATC ACCATGTCCAAATACAGCATCTTCATTTAGCATGTGGATCATCATTCACCACCACATATATTTCCCATTGATAAACCCAG AACACTTTGAATTAAACCCCCACCACTATGGAAATAATCAGATAGACAACTAGCTCCACAAAAATCTTAAAAACTGATTC ACGAAGCCATCAACACAAATTCTAATTCCTTCCAAATTCCAATACTTACAGATAATGACAAACCTCTAGGCAATTAGACA AAGCCAGTCATGGGAAAAAAATCCCTCACACTTCAAAGAAAAGAAGAAATTCCAGTCCAAGAGAGGTCCTAGAGACAGAG ATTAATAGGCAAACCTTCCCTACACTGGCCAATTCAACAAAGATCCACCAAATCTGACAAATGCAAGAACACCAACATTT CAGCAACATTGCAGCTTCTGCCGGGAGACACTCCAAAAAATTGAACAAAATTGACTCTGTCTTCACGGTTCAACAACTCT GTAAACGAGAAGGAAACCACCAGACAGCAACAAACACCAATTAATATTATAGACTCATCTCAAACCTCATACTGCTCAAA CACCCCTTCAATTTGACAAGGAACAAGCACGAACAACAGCGGTACTTAGAGTCTTAGACGATTAGATTGCATTTGCTTTA CCAAGCCCTTAACACCCACATCGTCCAATCGCTTACCCATCAAGAAGGCAAGTCTCGCTCTCGTCACAACGCTAGAGGAT TCCTGAGCCTTCGGCAAAGTTAGAGGATTATCTCTAGCAGTGGAAACCACCAACACCTCCAGCAAACCAGAACCACTGCA ACCAAAACAGCAAAAGCCTTCTTTTTCCTTCCTCTTCCGAACAATTTCCTAGACCGACCTCTTTTCCTACGAACGCTAAA GCCAGTATCTTCCATGCTTGCTTCACAAGACTTGAATTTTCCTCTGTTTCAAATGCTTGCTCAGCCATCAATGTGACCTT CAATTTCCCTTGACTTGCTTCTGCTGCCGCTAGCTTTGTCTCCGATGCGGCCTCAGATTCCCTCTGTGACGCCTCTGCCG CTCTCCTTTCTTGTTTCTTCTTCTGTCTTCTCTCATCAAGTTCTCTCAATTGAGCTTTAATCAACTCTTTTTCCTTTCTG TACCATGCATTCACCCTCAGGAATTCTCCAGCCATCTCCTTCAAATGCTATTTGCTATAGGATTCAAGGTTAGGGCACCT GAATCGGTGTCATGATACCAATGATAGAACCCTGATTTTATTCTATGATAGAACCCTAATTCCAAATTAGGGAATCAGAG AGAATTACAAGTGAAATGATACCCAAAATGTAAAAAAGATGATCCATAATACTCTCTACTCCCTCTTATTTATGGCAACA TGCCTAACTCATTAACAAACTACCAACACTTCTTAACTAACCCCTATTCCCTATCATACAGCCTATCACCAAGCATAATT TTCAAAGTGCTACTATTTCCATGGGTCACATACCTTCTTTAGTGGATAATTTATAGTCCTTGAAAAAGTAATGAGGTTAC AATGCATAGTCATGAAAATTTTCCTATGTTACTACTTACTTATATCATTGATTTCCAATGTAAAATAGCTTCCATTTGTT TCAAGAAAACTGAAATAGACACTCACAGATTCACTGAGAGGGGCAGAGTTTCCTGAGCGTAATGGAGGTGCGTCTGGTCT GGCTCAATTCCTGGCCCTGCCACGATTGAAAACCCGGTCTGCGATTAATCTCGTGCTTCCACCGATACCTCGCTTCCCCT GACATCAGAACCAGAGAACCCGGCAAAAGCAAAACCGGAACCGATTCCGGACCCGAACCCGGTTCATCCGATTCCGGTAC CGGCGAGAAATGCATGACGCAGGAGGATTCCAAGGAGACGATGGCGATGCCGTCGTCGAAGCGCAAGAGGTCGACGTGAG CAGCAATGCCCTCGCCGGGGTGGTAGACGTTGACGATCATCTGGTCGAACAAGGGTTCTCTTTGGAAGGGGAACGTGGTG GTGGTGGGTTGGGTTGGGGCGGAGCGGCGGATGGAGTGGGCGAGGGTTTGGGCCCATGGTGGGAGGTTTTGGTGGCCGAA GCGCATGGCTTGGTTGATTTCAGGGTGGTGGTCGGAGAACCAGTTCTCGGATTCGATGGCGGAGAGTAAGAGGGATTGGT GGTGAATTGAGAGGAAGTGTGTGCAGAGCCATAAGCCTTTCACTTCCTCAATGCATTTCCATTCTCGATCGCTGTCGCCG GAATCGGAATCGGAATCGGAGGAAGATTCGCCGAACACTTGTTCCAGTATCGTCTTCTGCTGTTGCTGCTCCTCCTCCTC CATCTTTGACTTTGACTTTCTCAATCCTACATGGTGAAGAAGAAGGGTTGCTACTTTTTTCTGGGCCAAATGTGGGCTTG TAATGGGCCAGTTTCAATATGCTCTGATCCAATGCTTAGGTTTGATGAAATTTTTGGACTCTAGCTTGATTTTTAATTTC ATATTTAATCAAATATATTCAGTTAAATTAAATAAAAAAATGTTACTGAATTAAATCCATATAGGTGTCAAACTAAACTA GTATATTGATTAGTGGGTATTGTTGTTGTCTTCCCATCTGAATATATTTTCCGGCAGCAAGGTGGTGTGATGTTGAC
CDS sequence (LotjaGi1g1v0038200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGATATACAAAGAAGCAATATCATATTTTTCTCAGTTTTGAAGGAAAAGATACTCAATGTCTTCATGGACGATCA AGGGTTAGAGAGAGAGGGCTCTATTTCACAAGTTCTAATCGGGGCAATTGAAAACTCACAACTTTCAATTATTATTTTCT CGAAAAACTTTGCAAATTCTACCGGGTGTTTGGATGAAGTTGTTAAGATTCTTGAGTGTAAAAAGGAGAAAAATCAGCTA GTTTGGCCTGTCTTTTATAAAGTGGAGCCCTCCGACGTGAGGTATCAAAATAAAAATTATAGAGAGGCTATGGCCAAACA TGAAACAAGATTTGGAAAAGAGATGGTGAAGAACTGGAGATCAGCTTTGCACGAAGTCAGTGGCTTCAATGCTTTCCCAT ACAAGAAAGACAGTGGGTATGAAAGTGATTTTATTCAAAGTATCGTAAAAGCTGCCACCAAAATTAGAGATGGTTCGTAA
Protein sequence (LotjaGi1g1v0038200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWDIQRSNIIFFSVLKEKILNVFMDDQGLEREGSISQVLIGAIENSQLSIIIFSKNFANSTGCLDEVVKILECKKEKNQL VWPVFYKVEPSDVRYQNKNYREAMAKHETRFGKEMVKNWRSALHEVSGFNAFPYKKDSGYESDFIQSIVKAATKIRDGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 4 | 129 | 126 | 1.3E-12 | ||
| Gene3D | 7 | 157 | 151 | 3.2E-46 | ||
| SUPERFAMILY | 12 | 129 | 118 | 4.32E-26 | ||
| PANTHER | 15 | 153 | 139 | 3.7E-46 | – | |
| PANTHER | 15 | 153 | 139 | 3.7E-46 | – | |
| Pfam | 15 | 151 | 137 | 1.9E-30 | ||
| ProSiteProfiles | 20 | 129 | 110 | 17.768 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0038200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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