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LotjaGi1g1v0045500.1

Overview

Field Value
Gene ID LotjaGi1g1v0045500
Transcript ID LotjaGi1g1v0045500.1
Lotus japonicus genome version Gifu v1.2
Description Glutathione S-transferase; TAIR: AT2G30860.1 glutathione S-transferase PHI 9; Swiss-Prot: sp|O80852|GSTF9_ARATH Glutathione S-transferase F9; TrEMBL-Plants: tr|I3SZ71|I3SZ71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0045500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:6218034..6219953) extracted from Lotus japonicus Gifu genome v1.2.

TTATTGGCACTATAATAAAGAAGTGAACCAAGATCTACCTGAAGAAGGTGGAAGAATTTTCTAGAGAAAGATAAACAATG GCAGTGAAGGTTTATGGTCCCTCCTGTGCTGCAGCCAAACGGGTGCTGGTTGTTCTGATTGTGAAGGCAATCGAATTTGA GGTTGTCCCTGTTGATGTCTTCAAAGGGGAACATAAGGATCCTGAGTACCTCAAATTACAGGTTCATCTCTTCAATCTTC CTTTCATTTTTTGTTGAATATGCTTAGACTGGTTATTTATATATATCTTCATCTTCTGATTCATGTTCTGTGTTTTTTAT CTGCAGCCCTTTGGAGTTGTTCCTGTCATTAAGGATGGAGATTACACCTTATACGGTTAGTAGTTCTGAATCCTACTTCT GCTTTGCTACTCATGTTATTTTTTGTTTTAAATTTGTTTCCCTTTCCTAACTCATTCACTCTGGTTGTTTGGAAATCCTT CTACAATTGATTCAGATTTCATAAACAGAATCAATTTGAGAGAGAAGCTTATCTGATCAGTAGCTTTTTGGTTTCATAAT TGATTTTGATGAAATAGAAAATTAATCCAAACATGCTATTACTACTGTTGCATTTGATATAATCATATTAATAAGCGGGA CCCTGTGAATATTTAGAGAGGAAGCTAGTAAAAACAAAATTTGGTGAGAGGATTCGAGTCGCCTTAATTTGTAACATGTT GCAAATCGTTCTACAATCGATTCTAAGCTCAAAATCAATAATGGGGAATAGCTTTTGTGATAACAAGTTTGGTTCCACAG TCAAATACACCAGAATCAACTATAATTAAAAGTTAAAAATTTTAATTTCTAGTAAACATGCATCTATATGTGCAAATCGT GAAAACAAATATGTTACGATAAGTACATATTTAGATATACAGTACTCAAAGAAACCAAAATCATAGTGGACATAAGTAAA AGCTAAGGGAAGCTGCTTCTGTCCACCATGATTTTGGCTTGTCTCACTGTGGTTTTCTTCCGTATATCCAAACAAAGACT AAGTAGCTTTTGAGTGTTAAAACTTAAAATTGATAATGGGGAAAAATAAGTTGATACAGCACTTTACTAATCTATTTGTG CTGCAGAATCTCGGGCCATAATGAGGTACTATGCAGAAAAATACAGGTCCCAAGGGATTGATTTACTTGGAAAGACTATA GAAGAGAGGGGTCTTGTGGAACAATGGTTAGAAGTTGAAGCACATAACTTTCACCCACCAGCATATGACTTGACTATTCA TATTTTGGTTCCTCAGCTAGCTGGTATCACTCCAGATCAAAAGGTGATTGAAGAGAGTGAAGCAAAGCTGGTGAATGTGT TGAACATTTATGAGGAGAGGTTGTCAAAGAGCAAGTATTTGGCTGGGGATTTCTTCAGCCTTGCTGATATAAGCCACCTT CCATTCACTGATTATATTGTGAACAACATGGGGAAAGAGCACTTGATCAAGGAGAGGAAACATGTTAGTGCTTGGTGGGA TGACATAAGCAATAGACCCTCATGGAAGAAGGTTCTTGAGTTATACAAAGCTCCAGTCTAGTTGCTCAAAGAATTTCTGG GAAATTTCAATTAGTATCATCTTAATTTGTGGTTGTTAGCAAAGAATAAATGTGTTATTTTATAAATAAATTCCAGGGGA AATGAAGGATTTGGGAACCAAGTGGATTATTTTCAACCTGAAGTCGTGGAGTGTGTTGAATTTGTTCCTTGGCTCCTTTC ACTTTCATCTGTGTTGAATTTAGGGGCGTTCATGCTATTTGATTAATTGTTGCACTTTTTATCTGAACTGATAAGAATAT ATATGGTACAAGTTTTTTTTAAATGGCGCATGTTGTTAGATATTTATGAACACACAAATGATTGCTATGAGGTGTTAAAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0045500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGTGAAGGTTTATGGTCCCTCCTGTGCTGCAGCCAAACGGGTGCTGGTTGTTCTGATTGTGAAGGCAATCGAATT TGAGGTTGTCCCTGTTGATGTCTTCAAAGGGGAACATAAGGATCCTGAGTACCTCAAATTACAGCCCTTTGGAGTTGTTC CTGTCATTAAGGATGGAGATTACACCTTATACGAATCTCGGGCCATAATGAGGTACTATGCAGAAAAATACAGGTCCCAA GGGATTGATTTACTTGGAAAGACTATAGAAGAGAGGGGTCTTGTGGAACAATGGTTAGAAGTTGAAGCACATAACTTTCA CCCACCAGCATATGACTTGACTATTCATATTTTGGTTCCTCAGCTAGCTGGTATCACTCCAGATCAAAAGGTGATTGAAG AGAGTGAAGCAAAGCTGGTGAATGTGTTGAACATTTATGAGGAGAGGTTGTCAAAGAGCAAGTATTTGGCTGGGGATTTC TTCAGCCTTGCTGATATAAGCCACCTTCCATTCACTGATTATATTGTGAACAACATGGGGAAAGAGCACTTGATCAAGGA GAGGAAACATGTTAGTGCTTGGTGGGATGACATAAGCAATAGACCCTCATGGAAGAAGGTTCTTGAGTTATACAAAGCTC CAGTCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0045500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVKVYGPSCAAAKRVLVVLIVKAIEFEVVPVDVFKGEHKDPEYLKLQPFGVVPVIKDGDYTLYESRAIMRYYAEKYRSQ GIDLLGKTIEERGLVEQWLEVEAHNFHPPAYDLTIHILVPQLAGITPDQKVIEESEAKLVNVLNIYEERLSKSKYLAGDF FSLADISHLPFTDYIVNNMGKEHLIKERKHVSAWWDDISNRPSWKKVLELYKAPV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50404
1 81 81 20.056
IPR004045
Gene3D
G3DSA:3.40.30.10
1 85 85 6.5E-28
IPR036249
PANTHER
PTHR43900:SF65
2 215 214 1.1E-127 –
CDD
cd03053
2 76 75 3.86435E-36 –
PANTHER
PTHR43900
2 215 214 1.1E-127 –
SFLD
SFLDS00019
4 201 198 1.401E-45
IPR040079
SFLD
SFLDG00358
4 201 198 1.401E-45 –
Pfam
PF02798
7 74 68 5.2E-15
IPR004045
SUPERFAMILY
SSF52833
7 81 75 3.26E-21
IPR036249
SUPERFAMILY
SSF47616
72 212 141 1.36E-33
IPR036282
ProSiteProfiles
PS50405
88 215 128 23.663
IPR010987
Gene3D
G3DSA:1.20.1050.10
88 208 121 4.3E-49 –
CDD
cd03187
90 208 119 1.62459E-63
IPR034347
Pfam
PF00043
115 202 88 2.7E-15
IPR004046

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0045500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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