Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0046300 |
| Transcript ID | LotjaGi1g1v0046300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 56; TAIR: AT4G19645.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; Swiss-Prot: sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B; TrEMBL-Plants: tr|I1M706|I1M706_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0046300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6325646..6330718) extracted from Lotus japonicus Gifu genome v1.2.
GCGGGTGCCAACTATATTTATACTTTATCTGTCATCTTCCTCACCCTCACACTTCTTCCAAATCCCCAAATCCATCGTTC TAGGGTTTTCAGAGCCCCAATTTCCCCTTCAGTTTCTTCAATCACCCACCATCTTCATCTCCAAATTGCAATTGAATCCC GTCCAATCACTGGGTTATCGCGCGATCGCGTTTTCTCTCATGTTTTCCGTTTGGTAGCTCACCAACACTGCGATTCGGTA TGATTCTTTGTTCCTTTCTACTCCCTGTGCTTGCAAAGCTGAAAAAAATTGGGTTTTGTTTGGTTTTGTGTGGTTTTTAG GGGTAGCATTTATGTGGGCATGTGCTATGTATCGGTGCTTTGAAAATTCTGCAGTGGCTTGAGTCGTGGTTGATTGAGTT CTTGCGTGAACAATTGGGGTGGTGATTTGGTGTGGAAAGTAGAACCCTTTGTTGTTCACCTTGTCATCCATTTGCATTTT GACTAACTTCAGTAGTTCTAATATTTTTCCCCATTTTTCAATAGGAATGGATTTTCGTTTTCTATCTCTCAAATGTGGAT ACAATCAGTGGTCAGTTTTTGGTAGTTCTGGGAATTGTCAGTTTTACATTAATTTGAGTTGTTACTGATGATACACTGAG TGAGTAGTAACTTGTTTGTCATTTTGGTAATACATAATGGTGGTAAGTGGTAACTGGTCAGGGTTGATATTAATGAGTAA ACTGTTTATCACCAATGTTCAGGCCTGAAGCATATCAGTATTTACTTTTTCTCCTACCTTCTCTGGATGATTAATTGGTT TCCTGCTGATATTAACAACTTTATTTCTTGCTGTCAAAAAAAAAAAACAACTTTATTTCACTTCTGTTGGTTTGGTTGGT GGATCTGTGATTATGTTGTAGCTTGTTATTCACATTGCTGGGTAGCAGCATTTGGAATTTGGAACGGTCTTTTTGGAGTT TTGGGTGAATCTTGGGTATGTGCAGGGGGCATGTAACATTTTGTCTTGTTGATTGATTTTAGAGGTTTTGGCTAAAGTAA GGATGAAGAAGAGTTATGACAATGTGTTTTTTAATGTGAATAAAGTTTGCAGAATGTTTGGATATTCTGCGGGAAGCTCT TACCTTTTTAGAGTTGATTTTGGATAAGATTGCTTTCTATGAAAGAGATTTGCACCCTTTTAAAATTTATTGATTGATTT TGTTTTGGATTTCTATCTCCTTTTCTACTAGGAAGATACCTTATCCTCCAAATTCCTTGAATTTCTTCTTTCCTTCCATG GATGTTCTTGCTTTGTAAGTAAAAAGGATGTAATTAATCATGTAGTCTCCTTTCCTATTCGGCACACAAAAGACATATAC TTAATTTGTTATGCTGGTTTCTCTTCATTTATGTAGCTTATGTAGTTATGTGATAGTTATTGTTATCCTTAAATCATAAG TCATTTTCAAGGACAATCACGTTTGGTTCATCTTTGGCTTTTAATTTTTTCACATCTTTTCTTCAAGCTTGTATTTATTC ATATAACAGGTGACCGGAGAAAAGGTGGAAATCACATACAATCTTCAAGATATTTTTCATCCAAGGGAGTTTACAATGTT GGCTTCTAAAGATATTATGAAATTCAAATCATACCAGAACCAGGCTAATTTGTTCGTGAAGGAATATTTGTTAGCAGACC CTCTAATTCCATATACTTCCATTGTTGGTGGCATTTTTGCTTGCAAGATGGTATGTTGTATTATATTATGTTTTTATTCT ATTTTCTCTAGTATTTCACCAAAGAGAAATTAAGATTTTCCAATCTTACATTTATATCTAAATATTCCCTGTTTTTTAGG TCTATGATCTTACTCAGCTTTTTAGCACTATTCACTTTAAGAGCTATTCTAGCCTCACTAAAATCCAACGTATTGAGTGG AATAACCGGTCAGTGGATGTTTTCATTTAGTGGAAAATCTGTTCTTCTGTTTATGATACTGTAATGTTTATGAACTTTTT CTATCTTTTGTGCAGTGCTATATCAACTATACATGCCATTTTTATAACAACTATGTCATTGTACTTCGTGTTCTGCTCAA ATTTATATTCTGACAGCGAGTCGGCTGAACTAATTACGGTTCGAAGCTCTTCATTGTCTACATTTGCTCTGGGGGTAAGA ATGATCTGGATTCTGAACTTGTCAATTTCTTTGCTTATTCTTACCCTCTTTGTGATTTATCTCTGCAAGTCGCAATTATG AGAATCAATAATTACATATAAGAGTAGGGCATTTCAATAAATCAAATTCATCTAACTTTTAGAATCTGGAGATAGAATTC ATTGTATATTGGTCTATGACTCTACGCCAAGTAGGGTTAGACATAATTAGCAATTGCATCATAGCATGTCGTACTAACTT TTTGTCATTGTGTTTTTTGATATCATTATGACTGACTTGATGTAGTGTGGTTTCAAAAAACTGAGTTAATATGCTAGTTC AGACATTTTCTTGGAGATTTTGGCGCGCCTTTTATATCTTGACATTTTCATGATGGAGATACGATAAATTGACCGTGAAA CACTACACATTCTAGAAGTTAAATTGGGAGGACACCCATGCCTTGTTATATGAAAGCAAAGGGGACTAGTTGAAAGCATG GATGCCACGTTAAAATCAAAATAACATTTTAAAGAAACTTTTGGTATGCGATAAGCTAAAAAATAATGCTAACATGCATG CAGTATAGGATAGCCTTTTATGGTACATCAAGTGATTACAGAATCCAGCAGAGATTTAACATATTAGGAATATTTCTAAC AAAGAAGACATAAAGCAGAATTTTTGTATAATAATCAATTATCTGAACACACAAGATTTTATCTGCTTCAGGAGACTGGT CATGAAATGCTATTTTCCTTAAGCTGCATTTTCAAAATATATTTTCCAGCTGAAAGTTTGCTCAAAAAAGAAAAACAGGG TAGTAATCCCATATGTTCTACATGGTTCACCTTGTAAACTTTAAAGAAGGCTGCAAATGCTCTTCGCGCCTATATATTTC TTGGAGTTTCTGTTAAATAACTCGAGTTTTCTATCTGGTCATGATTTCTGTATTCCTCACATTTTAATTTTACATTGACA GGTTTCTGTTGGTTACTTCATTGCTGACCTTGCGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATGTAA GGATCATATCTTTTGACTTGCATAGTTTAAACTTTAGACCAACCTGTCTGATTAAGCTGAACTCTCTTATTCAGTTTTAA GACATTTCACTTGATAGGAACCCAGCTTGAGATGATTATGGCCAGAATTTGGCTTCTTCCTTTTTCTCCCTTTTGTCCTT CTGCGTCAGGATTTAACGTGACTTCATATTAACATTGATTCAGGTGATTCACCATCTATTTTCTTTAGTAGCAGTAGCCT ATTCAATGTTGAGCGGGGAGGGGCAGCTATACACATATATGGTACTGATCTCTGAGACAACAACTCCCGGGATCAATTTA AGATGGTAATCTTGCACTTAAATTTTCTCTGAATATAGCATGTAATTTGTTTCTATGTTAATGTATTTATTTTGTTTTTG AAGGTATCTTGATGCAGCTGGAATGAAAAGGTCAAAAGCTTATCTCATCAATGGGGTTGTAATATTCATCGCTTGGCTGG TGGGTCAAGTCATTGCAGTTTGAATTATATCCCTGTAAATTATGTATCATGTTATTTGTAGAACCACTGTAAAGAACATA TCATGTTTATATATAGTCCCATTCCTGCCTTCTTGGATGTGCTTACTGAAATGTTCTTTCTATCTGCAGGTTGCGAGAAT ACTTTTGTTCGTTTACATGTTTTGCCATGCTTACTTGCACTTTGATCAGGTAATAACTACCAACACACTGAATTGAAGAA TTGTCTGGTGTGTGGTGCTTTTTATAGAAAACAGTATTTGTATTGAATTTTTGGTTTCTTAATTCAGCTATATATTGTCT TCGATGATAATTGACATAGAGCTTGGATCCGTTTGTTGCCTACAAGATCATTTTCTGAACATTTATTTATATTATGTGCT AAAAGGTATTAATTTGTGGTTTGATGGGATTTTGTTAGGGTTACTACTTACAATCTATCAATGGATAATATATATTCTTA CATTTTTGTGATAAATACTGTAGTTTTGTTTGAAAATCTGTGAAATTGTCAATTTCTTTGTAATTTCTGGTGAAGCAACT TGGTTTTATAATAGGATCTCATGTCATTGTTGAATTATGCAACAGGTTCAGCACATGCACACCTTTGGGCAAATATTGGT GATTGTTGTGCCATTGGCGCTATCAGTCATGAACTTAATTTGGTTTTCAAAGATTATCAAAGGGATGATGAAAATGCTGG CGAAGAGGCAGTAAATGTTATGGATAGTAAAAATTTTGAGGAAAATGAAATGAAATATAGGTCACCCTGTTGATATCCAG CTCTGCCCTCTCTGGTTTAGGTAAAAATATAAATGTGTATTAAAAGATGTAACAGGAGAGAAAAGAATATGTTTGGATCC CTTGTAGATCTGAACTCATATTGTACAAAATATGTTATAGATCTGCTTTTTTATATCCTTATTCATGTACATTTATCAGT TCAGTTTTGGTTTATATTCTGTTTGAATGCGATTATGCGATCTATTTTGTCCTCGTTCGTCCTCGTTCGTTTGGCAGGGC GCATAGGAAGAACTTATTTGAGCTTTTCTTGTACCATAAATGTTTATGCAAGTATTTGGGTCAACTTATGTAAATAGCTC ATGACCTACTTATAAACTGTTTTGAGCTTATTTTCATAAGTTGTTTAGAATAGCTTATAAATAAAAGCTTATGCTTATAA CATAACTTTAACTTGTTGCAATAAATTTCTCAAATTAGTAATAAGCGCTTGTGCGATAAATGCTTATGGCTTGCTATAAG CGCGTAATTAAATTGTTTTCTCAAACGCTTAATTTTTGACACTACATACCATGACCGTGATAGCATTGTAGTCAAAGTGG ATCTGAGAAGAGGAATAATTACTTCATACACGG
CDS sequence (LotjaGi1g1v0046300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCTTCTAAAGATATTATGAAATTCAAATCATACCAGAACCAGGCTAATTTGTTCGTGAAGGAATATTTGTTAGC AGACCCTCTAATTCCATATACTTCCATTGTTGGTGGCATTTTTGCTTGCAAGATGGTCTATGATCTTACTCAGCTTTTTA GCACTATTCACTTTAAGAGCTATTCTAGCCTCACTAAAATCCAACGTATTGAGTGGAATAACCGTGCTATATCAACTATA CATGCCATTTTTATAACAACTATGTCATTGTACTTCGTGTTCTGCTCAAATTTATATTCTGACAGCGAGTCGGCTGAACT AATTACGGTTCGAAGCTCTTCATTGTCTACATTTGCTCTGGGGGTTTCTGTTGGTTACTTCATTGCTGACCTTGCGATGA TATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATGTGATTCACCATCTATTTTCTTTAGTAGCAGTAGCCTATTCA ATGTTGAGCGGGGAGGGGCAGCTATACACATATATGGTACTGATCTCTGAGACAACAACTCCCGGGATCAATTTAAGATG GTATCTTGATGCAGCTGGAATGAAAAGGTCAAAAGCTTATCTCATCAATGGGGTTGTAATATTCATCGCTTGGCTGGTTG CGAGAATACTTTTGTTCGTTTACATGTTTTGCCATGCTTACTTGCACTTTGATCAGGTTCAGCACATGCACACCTTTGGG CAAATATTGGTGATTGTTGTGCCATTGGCGCTATCAGTCATGAACTTAATTTGGTTTTCAAAGATTATCAAAGGGATGAT GAAAATGCTGGCGAAGAGGCAGTAA
Protein sequence (LotjaGi1g1v0046300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLASKDIMKFKSYQNQANLFVKEYLLADPLIPYTSIVGGIFACKMVYDLTQLFSTIHFKSYSSLTKIQRIEWNNRAISTI HAIFITTMSLYFVFCSNLYSDSESAELITVRSSSLSTFALGVSVGYFIADLAMIFWFFPSLGGYEYVIHHLFSLVAVAYS MLSGEGQLYTYMVLISETTTPGINLRWYLDAAGMKRSKAYLINGVVIFIAWLVARILLFVYMFCHAYLHFDQVQHMHTFG QILVIVVPLALSVMNLIWFSKIIKGMMKMLAKRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 75 | 75 | - | – | |
| PANTHER | 5 | 274 | 270 | 1.7E-158 | – | |
| PANTHER | 5 | 274 | 270 | 1.7E-158 | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| ProSiteProfiles | 67 | 271 | 205 | 35.455 | ||
| SMART | 67 | 271 | 205 | 2.7E-39 | ||
| Pfam | 71 | 264 | 194 | 1.9E-32 | ||
| Phobius | 76 | 94 | 19 | - | – | |
| TMHMM | 77 | 94 | 18 | - | – | |
| Phobius | 95 | 113 | 19 | - | – | |
| Phobius | 114 | 137 | 24 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 138 | 143 | 6 | - | – | |
| Phobius | 144 | 162 | 19 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 163 | 167 | 5 | - | – | |
| Phobius | 168 | 189 | 22 | - | – | |
| Phobius | 190 | 200 | 11 | - | – | |
| TMHMM | 200 | 222 | 23 | - | – | |
| Phobius | 201 | 228 | 28 | - | – | |
| Phobius | 229 | 239 | 11 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 240 | 259 | 20 | - | – | |
| Phobius | 260 | 274 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0046300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…