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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0046300 |
Transcript ID | LotjaGi1g1v0046300.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transmembrane protein 56; TAIR: AT4G19645.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; Swiss-Prot: sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B; TrEMBL-Plants: tr|I1M706|I1M706_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0046300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6327241..6330059) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGGCTTCTAAAGATATTATGAAATTCAAATCATACCAGAACCAGGCTAATTTGTTCGTGAAGGAATATTTGTTAGC AGACCCTCTAATTCCATATACTTCCATTGTTGGTGGCATTTTTGCTTGCAAGATGGTATGTTGTATTATATTATGTTTTT ATTCTATTTTCTCTAGTATTTCACCAAAGAGAAATTAAGATTTTCCAATCTTACATTTATATCTAAATATTCCCTGTTTT TTAGGTCTATGATCTTACTCAGCTTTTTAGCACTATTCACTTTAAGAGCTATTCTAGCCTCACTAAAATCCAACGTATTG AGTGGAATAACCGGTCAGTGGATGTTTTCATTTAGTGGAAAATCTGTTCTTCTGTTTATGATACTGTAATGTTTATGAAC TTTTTCTATCTTTTGTGCAGTGCTATATCAACTATACATGCCATTTTTATAACAACTATGTCATTGTACTTCGTGTTCTG CTCAAATTTATATTCTGACAGCGAGTCGGCTGAACTAATTACGGTTCGAAGCTCTTCATTGTCTACATTTGCTCTGGGGG TAAGAATGATCTGGATTCTGAACTTGTCAATTTCTTTGCTTATTCTTACCCTCTTTGTGATTTATCTCTGCAAGTCGCAA TTATGAGAATCAATAATTACATATAAGAGTAGGGCATTTCAATAAATCAAATTCATCTAACTTTTAGAATCTGGAGATAG AATTCATTGTATATTGGTCTATGACTCTACGCCAAGTAGGGTTAGACATAATTAGCAATTGCATCATAGCATGTCGTACT AACTTTTTGTCATTGTGTTTTTTGATATCATTATGACTGACTTGATGTAGTGTGGTTTCAAAAAACTGAGTTAATATGCT AGTTCAGACATTTTCTTGGAGATTTTGGCGCGCCTTTTATATCTTGACATTTTCATGATGGAGATACGATAAATTGACCG TGAAACACTACACATTCTAGAAGTTAAATTGGGAGGACACCCATGCCTTGTTATATGAAAGCAAAGGGGACTAGTTGAAA GCATGGATGCCACGTTAAAATCAAAATAACATTTTAAAGAAACTTTTGGTATGCGATAAGCTAAAAAATAATGCTAACAT GCATGCAGTATAGGATAGCCTTTTATGGTACATCAAGTGATTACAGAATCCAGCAGAGATTTAACATATTAGGAATATTT CTAACAAAGAAGACATAAAGCAGAATTTTTGTATAATAATCAATTATCTGAACACACAAGATTTTATCTGCTTCAGGAGA CTGGTCATGAAATGCTATTTTCCTTAAGCTGCATTTTCAAAATATATTTTCCAGCTGAAAGTTTGCTCAAAAAAGAAAAA CAGGGTAGTAATCCCATATGTTCTACATGGTTCACCTTGTAAACTTTAAAGAAGGCTGCAAATGCTCTTCGCGCCTATAT ATTTCTTGGAGTTTCTGTTAAATAACTCGAGTTTTCTATCTGGTCATGATTTCTGTATTCCTCACATTTTAATTTTACAT TGACAGGTTTCTGTTGGTTACTTCATTGCTGACCTTGCGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTA TGTAAGGATCATATCTTTTGACTTGCATAGTTTAAACTTTAGACCAACCTGTCTGATTAAGCTGAACTCTCTTATTCAGT TTTAAGACATTTCACTTGATAGGAACCCAGCTTGAGATGATTATGGCCAGAATTTGGCTTCTTCCTTTTTCTCCCTTTTG TCCTTCTGCGTCAGGATTTAACGTGACTTCATATTAACATTGATTCAGGTGATTCACCATCTATTTTCTTTAGTAGCAGT AGCCTATTCAATGTTGAGCGGGGAGGGGCAGCTATACACATATATGGTACTGATCTCTGAGACAACAACTCCCGGGATCA ATTTAAGATGGTAATCTTGCACTTAAATTTTCTCTGAATATAGCATGTAATTTGTTTCTATGTTAATGTATTTATTTTGT TTTTGAAGGTATCTTGATGCAGCTGGAATGAAAAGGTCAAAAGCTTATCTCATCAATGGGGTTGTAATATTCATCGCTTG GCTGGTGGGTCAAGTCATTGCAGTTTGAATTATATCCCTGTAAATTATGTATCATGTTATTTGTAGAACCACTGTAAAGA ACATATCATGTTTATATATAGTCCCATTCCTGCCTTCTTGGATGTGCTTACTGAAATGTTCTTTCTATCTGCAGGTTGCG AGAATACTTTTGTTCGTTTACATGTTTTGCCATGCTTACTTGCACTTTGATCAGGTAATAACTACCAACACACTGAATTG AAGAATTGTCTGGTGTGTGGTGCTTTTTATAGAAAACAGTATTTGTATTGAATTTTTGGTTTCTTAATTCAGCTATATAT TGTCTTCGATGATAATTGACATAGAGCTTGGATCCGTTTGTTGCCTACAAGATCATTTTCTGAACATTTATTTATATTAT GTGCTAAAAGGTATTAATTTGTGGTTTGATGGGATTTTGTTAGGGTTACTACTTACAATCTATCAATGGATAATATATAT TCTTACATTTTTGTGATAAATACTGTAGTTTTGTTTGAAAATCTGTGAAATTGTCAATTTCTTTGTAATTTCTGGTGAAG CAACTTGGTTTTATAATAGGATCTCATGTCATTGTTGAATTATGCAACAGGTTCAGCACATGCACACCTTTGGGCAAATA TTGGTGATTGTTGTGCCATTGGCGCTATCAGTCATGAACTTAATTTGGTTTTCAAAGATTATCAAAGGGATGATGAAAAT GCTGGCGAAGAGGCAGTAA
CDS sequence (LotjaGi1g1v0046300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCTTCTAAAGATATTATGAAATTCAAATCATACCAGAACCAGGCTAATTTGTTCGTGAAGGAATATTTGTTAGC AGACCCTCTAATTCCATATACTTCCATTGTTGGTGGCATTTTTGCTTGCAAGATGGTCTATGATCTTACTCAGCTTTTTA GCACTATTCACTTTAAGAGCTATTCTAGCCTCACTAAAATCCAACGTATTGAGTGGAATAACCGTGCTATATCAACTATA CATGCCATTTTTATAACAACTATGTCATTGTACTTCGTGTTCTGCTCAAATTTATATTCTGACAGCGAGTCGGCTGAACT AATTACGGTTCGAAGCTCTTCATTGTCTACATTTGCTCTGGGGGTTTCTGTTGGTTACTTCATTGCTGACCTTGCGATGA TATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTATGTGATTCACCATCTATTTTCTTTAGTAGCAGTAGCCTATTCA ATGTTGAGCGGGGAGGGGCAGCTATACACATATATGGTACTGATCTCTGAGACAACAACTCCCGGGATCAATTTAAGATG GTATCTTGATGCAGCTGGAATGAAAAGGTCAAAAGCTTATCTCATCAATGGGGTTGTAATATTCATCGCTTGGCTGGTTG CGAGAATACTTTTGTTCGTTTACATGTTTTGCCATGCTTACTTGCACTTTGATCAGGTTCAGCACATGCACACCTTTGGG CAAATATTGGTGATTGTTGTGCCATTGGCGCTATCAGTCATGAACTTAATTTGGTTTTCAAAGATTATCAAAGGGATGAT GAAAATGCTGGCGAAGAGGCAGTAA
Protein sequence (LotjaGi1g1v0046300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLASKDIMKFKSYQNQANLFVKEYLLADPLIPYTSIVGGIFACKMVYDLTQLFSTIHFKSYSSLTKIQRIEWNNRAISTI HAIFITTMSLYFVFCSNLYSDSESAELITVRSSSLSTFALGVSVGYFIADLAMIFWFFPSLGGYEYVIHHLFSLVAVAYS MLSGEGQLYTYMVLISETTTPGINLRWYLDAAGMKRSKAYLINGVVIFIAWLVARILLFVYMFCHAYLHFDQVQHMHTFG QILVIVVPLALSVMNLIWFSKIIKGMMKMLAKRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 75 | 75 | - | – | |
PANTHER | 5 | 274 | 270 | 1.7E-158 | – | |
PANTHER | 5 | 274 | 270 | 1.7E-158 | – | |
TMHMM | 20 | 42 | 23 | - | – | |
ProSiteProfiles | 67 | 271 | 205 | 35.455 | ||
SMART | 67 | 271 | 205 | 2.7E-39 | ||
Pfam | 71 | 264 | 194 | 1.9E-32 | ||
Phobius | 76 | 94 | 19 | - | – | |
TMHMM | 77 | 94 | 18 | - | – | |
Phobius | 95 | 113 | 19 | - | – | |
Phobius | 114 | 137 | 24 | - | – | |
TMHMM | 115 | 137 | 23 | - | – | |
Phobius | 138 | 143 | 6 | - | – | |
Phobius | 144 | 162 | 19 | - | – | |
TMHMM | 147 | 169 | 23 | - | – | |
Phobius | 163 | 167 | 5 | - | – | |
Phobius | 168 | 189 | 22 | - | – | |
Phobius | 190 | 200 | 11 | - | – | |
TMHMM | 200 | 222 | 23 | - | – | |
Phobius | 201 | 228 | 28 | - | – | |
Phobius | 229 | 239 | 11 | - | – | |
TMHMM | 237 | 259 | 23 | - | – | |
Phobius | 240 | 259 | 20 | - | – | |
Phobius | 260 | 274 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0046300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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