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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0046700 |
| Transcript ID | LotjaGi1g1v0046700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT3G10260.3 Reticulon family protein; Swiss-Prot: sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8; TrEMBL-Plants: tr|I3S2R9|I3S2R9_LOTJA Reticulon-like protein; Found in the gene: LotjaGi1g1v0046700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6361614..6367989) extracted from Lotus japonicus Gifu genome v1.2.
GGGTGAGTTGTGGTTTGCTGGTGTGGGTGGTTCTGGGTTGCGGCGGGGATGAGGTGAGGCTGGGTGTGGGTTCGATGGTA TTGGGGTGTGTTCTGGATGAAGATGAGATGAATATATGAAAAGTCTGTTTGAGAAGGTTTGATTTTGCAGAAAAATGGGA TCTCTGGGTTTGTTTCTGAGTTCGATTTCTGGATTTTGTTTCCAGATCTGAGAAGAGAAGCACAAATTGATGGAGCTTTG GAGGATCACTTCAAGAGAAGGTTGTGCCCTGGTTCTTCACTGTATCCGCTTGGGTATTCTAGTTCAAAATCAATCCCTTT TGAGTTTTGTAATTTGGCTTCACTCAGGTTAAATTACTGGCTGGTACCATTGTTACTATTTTTCATATGCAATAAACATC GCTGCTTTCAAATTCCACATTCTGAATCTGCAACCAGCAACCCTTTCTTCTCTGCAGTTTGAATCTCCGCACAGGTACCT CGCATTTCAACTCTCATTCTCTTGAACAGAGATCAAATCACGCTTCAACTTGTTGCAATTCTCTGATGGTTTTTGTTTTC AATTCGTTCGAATCAATCATGCTTTCGATTTTGATATTTTACACTCAGAGTTAGAGATAAACTTGCAATGTTAAGTTCTT TCAGAATTCACATTCAACTAGTTAGCTAATCAGAGTTTTTTTGTATTTGCTTTCTTGTTTCGGTTTGATTCGTAGGAAAA TGGAGAGACTCAAAAAGATGAAGGGAATGAAATAGTGGGAAGTATTTGGGTTTATGTTTATTACATTTTGATGAATAAAC ATGATATAAATAAATCTTTGTTCATAATATTACTAATTGTTTGTGTAGCTTAACTGGTAAAGTGTGTGTTTTGCCACTTT CATGTCTTGGGTTCGAATCTCCCCCACCCCTTTTTAAGTTTTTGATTTTTATTTAATGACGTGTCATTTGAGGAAATAAA AGAAAAATAAAAAGAAAAGTCACGTCAGCCCCTCCGTTAGTTTTTTAACGTCAATTTGACGGAGGGGCATTCGCTATACT TTCTCAGAACATTGAGGGTACAAACGTTGACAAAATTAGAAGAAGGGTGTCATTTGCACGCCCCTAAAACATCAGGGGCA CAAAATGCATTTAAGCCTATTATTTTCAATCACATTTTAATATTTCTTTAAAAAAATTAACGGTATGGTTGTTGAGATAT TAGATGTAGGTAGTTGGAATTTCTACCCCTCTTAGAATTGGTATCCCCTTTTAAATTTTGAAAATGTCCAAAATATCCCT CTTTAAATAATTCTTAAGCTTTGGTATCTCAGGAACACCCCGAGCTTTAAGTTTCGGGATATATTATAATTTTCCTAATG ATTTTCCCGAGGTTTGGTATCTCGGAACACTCCAAACTTCAAATCTTGGGATATTTTATAACGTCTCATGATACTTATCC TGAGATTTGATGGCTCGGAAACATCCTGAGTGTCTAATTCTCTCGGAATCCTTCCGAGGACTATGCCTCGGTAATTTATA AACGTGGATATCCTGAGGTTTGTCAAGCTCGGAGTGTGAAAAAATGTGTTCCTGAGGTTGCCAAACCTCGGAAACCGTAC TCGAAGAAATTGATCAATTTCCGAGCCTTATACCTCATAAGAATAACGTAAATTTTCCGAGCTTTTTCCGAACTTGCAAT TTCGAGACCTAAAGCTCGGAAAACAACTTTCAATCCCCAGGCCTAAAGCTCAGGAAAATGGGTGTTAAAACAGGGGCAAT TTCGAGTTTTTTAGAAAATACATGGAGTATCAATTTAAGAGGAGGGTACCAATTTCAATTCCCTTAGATGTGTACCACCA AGGCACCAAGGAGCATACAACTTGACAGATTGTTTTTATCTCTTTATCTTTCTTTCGGTCACATCAGAATCACATTATAT ATAACATATATCATTTATTTTCCATCTCTCTATTTCTCTCTAATGGCTTACATTCATTAGGTATACATAAATCTTTATTC CATTTATATTGACATTGCACCTTGTCAATCATCTTATCTGGGTTTCAACCTCCTTGTTTTACCTATTGATGATAATGTCG TCAATTCCACAGACATCCTGAAATGCAATTTAGGCAGCAGCTAATGTCTAATGAGTGCAATGTCAAGTTTCCATCCTCAA TCTAGCACTCAATTCAGACAGAAGGGTTCCCTACAAATTCCTGCAATGTCAAGTTTCCATCCTCACGTGAGTTGAAAATG TTAGGTCCAAGTAAGCTTTATTTTTGTTGGGGACGAGTCTCGCGCAAAGAGTGTAAGTGAAGGATCTAAATGCAATTAAA CCAACATTTTTCATTTTTAATTTCTTTAGAAGGCAACTCGTGAGTCAAAATTAGCCAAAATTGGAAAATCCAAAATGGGA AATTGACGTGAAGGTGGAGGTTCACGTGTATTTTGCTATTTGATTTTGAGAATCAGGTGCATGTGGTTGGTTGCCCAATT ATAATCTATTTTCATAAAATAAAATAAAAAGCTGTTTGGTAAGATTTTTTTCGCAAAAATACAACAAATAAATAAATAAA AATGTGTAGTTGAAATTCTTTAAATAATTGATTCAAGTTGTACATGTTTTATTCTCTTTTAGCATAGTCTAGGAATTGTT AACTCTACTCTAATACGGATGTTTCCGGCTCGAACCGAATTGCAGTAAAGGGACAAAAATTATTTAAATGGAGCATGAGC CTGCTTTTTTAGTTTTAACTACTCTTCTTAGTCTTCTACAGTTCTATACTACTCTATTTCTCTCTGCCAAATAATTGCAA CTAAGCAGCATCCTCCATCTCTCTATCCTTCTTCATTCATTCTGGTTTGTGCATCAAACCCTTTCACACTTTTTCATCAT CATCTTCTTCTTCCTTTTCAGTTTGGCTGCTGCAGTTAATTGTTGATATTTTGACACCTCTTTCACTTCACTCTTTCAAT TTTGTTGTTTTTATTTTTTTGTGATATTTGCTTCTCTGGTGTGAATTATTTACTCTACTTAGACTTTTGCAGGTGTTCAA GGAGAGTGGAATATACTTTGAATTTCTTTGTTTATTGATCTGTGTTGTCACTCAGAAGTCAAATGCTTCTTTTTTGCTTT TTAATTGGGGAAAATGAAAAAGGAAAAAAAATTGCGCTACCCCATTTTATTCTGCTTACCAAAGTTTCTATCTTTTCTAA CAAATTTGATTTTTTTTTTCATCTACCAGTGATCTTGACAATTTTTCTTTAAAGCAAGCAATCAAATTTTACTATTATTT TTTCACTTTTGGGTGTTTTGTGGCTTCTGTGTCTACCTTCCATGGTTAATTCATGTGGCTTTTCATTCTTTTCTATTATG AAAAGCAATTGGTATTGCTGTTTGTTTTGAAATTTTGACCTGGGGCACAAGTTTTGGGCTTTTTCTTATTGGGTGTTCTG GGTTACTGTTTGTGCTTTGAAAATGGGCAATGAGTGTGATAAGAGGAAATTTAGTGACATGAAAGTGAAGCTATAGTATT GATTGAGCATGTGGATTTAAGTTTCTGCACTGCCAATTTGAGTGGAGGAATCAGGGGCACAAGAGAGAGTTGGATGAAGC GTGGGTGTGACAATAGGCTATTGTAAATTTGCTTGATGAATTGCGATTAACTATGTCGATTGACAGATAATTTATATTTC CACTACTGTGTTGACATTTGAAGTAATTTTTTGTGAAGGGAATTACAAAAGGAACAAGTATTCATTTGAGTTTGTTTGTA AAAAATGAAAGCCTTGTAGTCGCAGGCTTTAACTTGAGGGGGACTGCTTAGTGCTGAGAAATATGATTTACTGTTATGTG ATTTAGAAAACATTTTCGGTTAAGTTAATTTTTACTCGTAGTGCACCCAAAGTAAAGGGTGGTGTTGTGTAGCTGACTTT CAATTGTTATATTTTTCTGAGTAAATAGTGTTGGCCTATGTCTTGTATGACAGACTGCAAGACCAACAGCTCTATTTATA CCGAAACTGAAACAATCAAAAGACAGATACTTGGCTACAGCCTTTACTTCGGGTCTCAGACTCCTTTAATGAAGTTAAGG CTCATTTTCATCAATAACAACCTAAGCACATCTACATGAAAGATGTAATGCTGTTGAAACATTGAGCTTGATAAAGTTGA AATACATACAGGCTAAAATGATTAATTGTCTGAGATGTTTCTTTTGTGATCTTAGACCCACTGGACTTGTTTCATGTTAG ATGGGTTTAACTTCTTGTCTTACTTTATGAGTGTCTGACTTGAGTTAGAAATATATACTTTCTTATATCATGTTCAGTGT AAAAAAATGTATGAATCTTATTACGTTATATTTACTTAACAAATCTATCACATTCACTTATGTGTATTATTTATTTGATT TTTCCATGAGTGGTGATTGATGCTGCATTGGTGTTAGGCATCATGGCTATTACATACAAAGCTTTATGACGTTCTTTTTT TTGTTCTTAGAATTTCGGGAACAATGTCTGACAAAATCACAGCTGAAAACCTTCTTAACACCCTTGTGGAAACAATTTCT CATGCTGAGCATAAAAAATCTGTATCATTCTTTGAAGAAGAGAAGCCTAACTCAGTGAGCTCCCAATTCAATAGACTGTT TGGACGCCAGAAACCCGTGCACCATCTTCTAGGGGGTGGAAAATGTATGATGCCAATTCTACTTAGTTTCCTGTAAAATC TATCACGTTGGCCTAGTTTTTTAATTCTTTTCCCTTTTGAATGATGTAGCTGCTGATGTCTTGTTGTGGAGGAACAAGAA GATCTCTGCTGGCGTTTTAACTGGTGCAACAGCTATATGGGTGGTTTTTGAATGGCTTAATTATAATTTCCTAACACTTT TGTTCTTTGCTCTGGCTCTTGGCATGCTTGCACAGTTTCTTTGGGCTAATGCTTCTGGCGTGTTTGGCAGGTTATCCAAG CTTCTTTACGATCATTCTTTTTTGCCTGATTTTATGTAAATGTATTACACTGCTTTACAGCTTTTTGTATTTTTGTTCTC TCTGGTTACAGGAAGTCATCTAAAGTTCCTCGTTTTGTTCTCCCAGAAGATTTCATTGTGAATATTGCAACTGCGGTTGG CTTTGAGGTTAACCGTGGTTTGAGGGTTCTTCAAGATGCTTCTTGTGGAGGAAACCTTAAGCAATTTCTTCTTGTATGTC TACTGTTGTGTTTACTTGTGTTGTTATTGTCATTTATATTCCAGAGTAATGCATAAAACATAGTTTTCAAGTTAAACCAT TCTTCACTTTCTGAGTCCAGGATTTGATTCAGTACTTGTTTTTCGATCAATTCCATTTTTTCTGTTTGCTTCAACATCTT ACATTTATTCCAGATTCATGCATAGCAATATTTCTTTCGAATTTGTGATGATTGTTAAAACATTACCAGGTTGTAGTAAG CTTATGGGCTGGTGCTGTGATTGGGAGCTGGTGCAATTTTTTGACTGTCATGTATATTGGTGAGAGACCTCCTTTCCTTT CATATTGTCAGTGTGTGTTGGCCAGAATGTATGCTTAAATTATTAAGTTGGACAAAGTTTGAAAAGTATATTTCAAATTT CAATTAATCCTACAATATTTGCTCTAAAAAACATGAATAGTTGAAAATGGAATTTATAATATTTTATCGCTTAAGGACAC TATTTGGTCTCTCTAGTTAACACTGTGTGTGGACATTTTTCCTTCTAGTTGATTTTTCATCTCATACTGGATTGATATTG ACTTTTTTATGTCATGTCCCAAGGTTTTGTTGCTGCTCATACATTCCCAGTTCTGTATGAAAGGTATGAGGATCAAGTTG ATGACTTTGTGTACAAGTTCCTTGGTCAGATGCGAAATCAATATCAGAAGCTGGATTCTGGCTTGCTTAGCAAAATCCCC AATGGAAAGTTCAAAGGGAAGAAGCATGAATAGGTTCATCCTTATGTAAATTGTTTGATTGTCTGTATCCTATTCTAACT TAAGATGGAATTGAGGGAAAAACCTTAATGAAGTAACTAGGGAAAAAGAATGATTTGTGTCATGTGGTTACTGATATTTA TTTTGTGCTATGTTGGGGGCTTCAAAATTTGTGCTGTCATTATTTGTCATTATTGGGAGATTGTGAAGGCTTACAAAACA GAGTTGGATATTATGTAAACCTATGTAAAAGGAATTTTTTATCTTCACACTTCAAATTCACCAATACTAAGATATAGAAA GAGAAGAAAGAGAAATGAATATGATTAGTAATGTGATATGAAAATATGAGAGATATGAAGAAAAAGTAGGTGAAAATGTG ATGGAAAAGAATGTGAGATGTGAATGATTATCAAGTTTTTCATTTAAATCATGTCA
CDS sequence (LotjaGi1g1v0046700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGACAAAATCACAGCTGAAAACCTTCTTAACACCCTTGTGGAAACAATTTCTCATGCTGAGCATAAAAAATCTGT ATCATTCTTTGAAGAAGAGAAGCCTAACTCAGTGAGCTCCCAATTCAATAGACTGTTTGGACGCCAGAAACCCGTGCACC ATCTTCTAGGGGGTGGAAAATCTGCTGATGTCTTGTTGTGGAGGAACAAGAAGATCTCTGCTGGCGTTTTAACTGGTGCA ACAGCTATATGGGTGGTTTTTGAATGGCTTAATTATAATTTCCTAACACTTTTGTTCTTTGCTCTGGCTCTTGGCATGCT TGCACAGTTTCTTTGGGCTAATGCTTCTGGCGTGTTTGGCAGGAAGTCATCTAAAGTTCCTCGTTTTGTTCTCCCAGAAG ATTTCATTGTGAATATTGCAACTGCGGTTGGCTTTGAGGTTAACCGTGGTTTGAGGGTTCTTCAAGATGCTTCTTGTGGA GGAAACCTTAAGCAATTTCTTCTTGTTGTAGTAAGCTTATGGGCTGGTGCTGTGATTGGGAGCTGGTGCAATTTTTTGAC TGTCATGTATATTGGTTTTGTTGCTGCTCATACATTCCCAGTTCTGTATGAAAGGTATGAGGATCAAGTTGATGACTTTG TGTACAAGTTCCTTGGTCAGATGCGAAATCAATATCAGAAGCTGGATTCTGGCTTGCTTAGCAAAATCCCCAATGGAAAG TTCAAAGGGAAGAAGCATGAATAG
Protein sequence (LotjaGi1g1v0046700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDKITAENLLNTLVETISHAEHKKSVSFFEEEKPNSVSSQFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISAGVLTGA TAIWVVFEWLNYNFLTLLFFALALGMLAQFLWANASGVFGRKSSKVPRFVLPEDFIVNIATAVGFEVNRGLRVLQDASCG GNLKQFLLVVVSLWAGAVIGSWCNFLTVMYIGFVAAHTFPVLYERYEDQVDDFVYKFLGQMRNQYQKLDSGLLSKIPNGK FKGKKHE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 71 | 71 | - | – | |
| PANTHER | 1 | 247 | 247 | 1.5E-139 | – | |
| PANTHER | 1 | 247 | 247 | 1.5E-139 | – | |
| ProSiteProfiles | 61 | 247 | 187 | 43.864 | ||
| Pfam | 62 | 216 | 155 | 1.1E-51 | ||
| Phobius | 72 | 90 | 19 | - | – | |
| TMHMM | 90 | 112 | 23 | - | – | |
| Phobius | 91 | 96 | 6 | - | – | |
| Phobius | 97 | 115 | 19 | - | – | |
| Phobius | 116 | 134 | 19 | - | – | |
| Phobius | 135 | 154 | 20 | - | – | |
| Phobius | 155 | 165 | 11 | - | – | |
| Phobius | 166 | 193 | 28 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 194 | 247 | 54 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0046700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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