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IPR003388 is a Reticulon.
<p>Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [[cite:PUB00007257], [cite:PUB00007258], [cite:PUB00007259], [cite:PUB00007260]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: reticulon-like protein B17-like [Glycine max] gi|356515152|ref|XP_003526265.1| | 9 | ||
| – | PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Glycine max] gi|356544508|ref|XP_003540692.1| | 14 | ||
| – | PREDICTED: reticulon-like protein B1-like [Cicer arietinum] gi|502156924|ref|XP_004510697.1| | 9 | ||
| – | PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like [Glycine max] gi|356506702|ref|XP_003522115.1| | 7 | ||
| – | 7 | |||
| – | PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like [Glycine max] gi|356506702|ref|XP_003522115.1| | 7 | ||
| – | 7 | |||
| – | PREDICTED: reticulon-like protein B16-like [Glycine max] gi|356550855|ref|XP_003543798.1| | 9 | ||
| – | PREDICTED: reticulon-like protein B8 isoform 3 [Vitis vinifera] gi|225446769|ref|XP_002283026.1| | 9 | ||
| – | PREDICTED: reticulon-like protein B12-like [Cicer arietinum] gi|502170890|ref|XP_004514940.1| | 9 | ||
| – | PREDICTED: reticulon-like protein B22-like [Cicer arietinum] gi|502149550|ref|XP_004507573.1| | 6 | ||
| – | PREDICTED: reticulon-like protein B17-like [Glycine max] gi|356542162|ref|XP_003539539.1| | 9 | ||
| – | PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Glycine max] gi|356544508|ref|XP_003540692.1| | 14 | ||
| – | PREDICTED: reticulon-like protein B9-like [Glycine max] gi|356520621|ref|XP_003528960.1| | 9 | ||
| – | PREDICTED: reticulon-like protein B1-like [Glycine max] gi|356574523|ref|XP_003555396.1| | 10 | ||
| – | PREDICTED: reticulon-like protein B1-like [Glycine max] gi|356574523|ref|XP_003555396.1| | 9 | ||
| – | PREDICTED: reticulon-like protein B11-like isoform X1 [Cicer arietinum] gi|502120384|ref|XP_004496943.1| | 9 | ||
| – | PREDICTED: reticulon-like protein B9-like [Cicer arietinum] gi|502120705|ref|XP_004497054.1| | 9 | ||
| – | PREDICTED: reticulon-like protein B21-like [Cicer arietinum] gi|502170088|ref|XP_004514755.1| | 10 | ||
| – | PREDICTED: reticulon-like protein B21-like [Cicer arietinum] gi|502170088|ref|XP_004514755.1| | 10 | ||
| – | Reticulon-like protein; TAIR: AT3G10260.3 Reticulon family protein; Swiss-Prot: sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8; TrEMBL-Plants: tr|I3S2R9|I3S2R9_LOTJA Reticulon-like protein; Found in the gene: LotjaGi1g1v0046700 | 9 | ||
| – | Reticulon-like protein; TAIR: AT2G26260.1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; Swiss-Prot: sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; TrEMBL-Plants: tr|G7J951|G7J951_MEDTR Reticulon-like protein; Found in the gene: LotjaGi1g1v0372600 | 14 | ||
| – | Reticulon-like protein; TAIR: AT2G26260.1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; Swiss-Prot: sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; TrEMBL-Plants: tr|G7J951|G7J951_MEDTR Reticulon-like protein; Found in the gene: LotjaGi1g1v0372600 | 14 | ||
| – | Reticulon-like protein; TAIR: AT2G26260.1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; Swiss-Prot: sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; TrEMBL-Plants: tr|G7J951|G7J951_MEDTR Reticulon-like protein; Found in the gene: LotjaGi1g1v0372600 | 14 | ||
| – | Reticulon-like protein; TAIR: AT3G10915.2 Reticulon family protein; Swiss-Prot: sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16; TrEMBL-Plants: tr|I3SEB5|I3SEB5_LOTJA Reticulon-like protein; Found in the gene: LotjaGi2g1v0260100 | 9 | ||
| – | Reticulon-like protein; TAIR: AT3G10915.3 Reticulon family protein; Swiss-Prot: sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16; TrEMBL-Plants: tr|I3SEB5|I3SEB5_LOTJA Reticulon-like protein; Found in the gene: LotjaGi2g1v0260100 | 13 | ||
| – | Reticulon-like protein; TAIR: AT3G10915.3 Reticulon family protein; Swiss-Prot: sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16; TrEMBL-Plants: tr|I3SEB5|I3SEB5_LOTJA Reticulon-like protein; Found in the gene: LotjaGi2g1v0260100 | 13 | ||
| – | Reticulon-like protein; TAIR: AT3G18260.1 Reticulon family protein; Swiss-Prot: sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9; TrEMBL-Plants: tr|A0A1J7GNC6|A0A1J7GNC6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0274000 | 9 | ||
| – | Reticulon-like protein; TAIR: AT2G23640.1 Reticulan like protein B13; Swiss-Prot: sp|O64837|RTNLM_ARATH Reticulon-like protein B13; TrEMBL-Plants: tr|G7K9D8|G7K9D8_MEDTR Reticulon-like protein; Found in the gene: LotjaGi2g1v0398000 | 9 | ||
| – | Reticulon-like protein; TAIR: AT3G54120.1 Reticulon family protein; Swiss-Prot: sp|Q9M392|RTNLL_ARATH Reticulon-like protein B12; TrEMBL-Plants: tr|V7AK87|V7AK87_PHAVU Reticulon-like protein; Found in the gene: LotjaGi3g1v0216100 | 9 | ||
| – | Reticulon-like protein; TAIR: AT3G54120.1 Reticulon family protein; Swiss-Prot: sp|Q9M392|RTNLL_ARATH Reticulon-like protein B12; TrEMBL-Plants: tr|V7AK87|V7AK87_PHAVU Reticulon-like protein; Found in the gene: LotjaGi3g1v0216100 | 9 | ||
| – | Reticulon-like protein; TAIR: AT3G54120.1 Reticulon family protein; Swiss-Prot: sp|Q9M392|RTNLL_ARATH Reticulon-like protein B12; TrEMBL-Plants: tr|V7AK87|V7AK87_PHAVU Reticulon-like protein; Found in the gene: LotjaGi3g1v0216100 | 9 | ||
| – | Reticulon family protein; TAIR: AT1G78895.1 Reticulon family protein; Swiss-Prot: sp|Q8GWH5|RTNLT_ARATH Reticulon-like protein B22; TrEMBL-Plants: tr|I3T8E2|I3T8E2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0341200 | 7 | ||
| – | Reticulon-like protein; TAIR: AT2G46170.1 Reticulon family protein; Swiss-Prot: sp|O82352|RTNLE_ARATH Reticulon-like protein B5; TrEMBL-Plants: tr|I3SP67|I3SP67_LOTJA Reticulon-like protein; Found in the gene: LotjaGi3g1v0388700 | 9 | ||
| – | Reticulon-like protein; TAIR: AT4G28430.1 Reticulon family protein; Swiss-Prot: sp|Q8LDS3|RTNLR_ARATH Reticulon-like protein B18; TrEMBL-Plants: tr|I1LUI2|I1LUI2_SOYBN Reticulon-like protein; Found in the gene: LotjaGi3g1v0446500 | 10 | ||
| – | Reticulon-like protein; TAIR: AT2G20590.1 Reticulon family protein; Swiss-Prot: sp|Q6DR04|RTNLQ_ARATH Reticulon-like protein B17; TrEMBL-Plants: tr|I1KEZ4|I1KEZ4_SOYBN Reticulon-like protein; Found in the gene: LotjaGi3g1v0451600 | 10 | ||
| – | Reticulon-like protein; TAIR: AT2G43420.1 3-beta hydroxysteroid dehydrogenase/isomerase family protein; Swiss-Prot: sp|A9X4U2|HSDD3_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3; TrEMBL-Plants: tr|K7LT52|K7LT52_SOYBN Reticulon-like protein; Found in the gene: LotjaGi3g1v0500400 | 14 | ||
| – | Reticulon-like protein; TAIR: AT3G18260.1 Reticulon family protein; Swiss-Prot: sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9; TrEMBL-Plants: tr|I3S547|I3S547_LOTJA Reticulon-like protein; Found in the gene: LotjaGi4g1v0358400 | 9 | ||
| – | Reticulon-like protein; TAIR: AT2G46170.1 Reticulon family protein; Swiss-Prot: sp|O82352|RTNLE_ARATH Reticulon-like protein B5; TrEMBL-Plants: tr|B7FIA7|B7FIA7_MEDTR Reticulon-like protein; Found in the gene: LotjaGi4g1v0431100 | 10 | ||
| – | Reticulon-like protein; TAIR: AT2G26260.1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; Swiss-Prot: sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; TrEMBL-Plants: tr|A0A151QYW8|A0A151QYW8_CAJCA Reticulon-like protein; Found in the gene: LotjaGi5g1v0143300_LC | 7 | ||
| – | Reticulon-like protein; TAIR: AT2G46170.1 Reticulon family protein; Swiss-Prot: sp|O82352|RTNLE_ARATH Reticulon-like protein B5; TrEMBL-Plants: tr|A0A0B2PUB6|A0A0B2PUB6_GLYSO Reticulon-like protein; Found in the gene: LotjaGi5g1v0295300 | 10 | ||
| – | Reticulon-like protein; TAIR: AT3G19460.1 Reticulon family protein; Swiss-Prot: sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11; TrEMBL-Plants: tr|A0A0B2SDK7|A0A0B2SDK7_GLYSO Reticulon-like protein; Found in the gene: LotjaGi5g1v0327300 | 9 | ||
| – | Reticulon-like protein; TAIR: AT3G18260.1 Reticulon family protein; Swiss-Prot: sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9; TrEMBL-Plants: tr|A0A0B2PBP4|A0A0B2PBP4_GLYSO Reticulon-like protein; Found in the gene: LotjaGi5g1v0336700 | 9 | ||
| – | Reticulon-like protein; TAIR: AT2G46170.1 Reticulon family protein; Swiss-Prot: sp|O82352|RTNLE_ARATH Reticulon-like protein B5; TrEMBL-Plants: tr|A0A1J7HMP0|A0A1J7HMP0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0046200 | 9 | ||
| – | Reticulon-like protein; TAIR: AT3G10260.1 Reticulon family protein; Swiss-Prot: sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8; TrEMBL-Plants: tr|I1KXW8|I1KXW8_SOYBN Reticulon-like protein; Found in the gene: LotjaGi6g1v0184800 | 9 | ||
| – | Reticulon-like protein; TAIR: AT3G10260.1 Reticulon family protein; Swiss-Prot: sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8; TrEMBL-Plants: tr|I1KXW8|I1KXW8_SOYBN Reticulon-like protein; Found in the gene: LotjaGi6g1v0184800 | 13 | ||
| – | Reticulon-like protein; TAIR: AT5G58000.2 Reticulon family protein; Swiss-Prot: sp|Q56X72|RTNLS_ARATH Reticulon-like protein B21; TrEMBL-Plants: tr|A0A0S3RGT5|A0A0S3RGT5_PHAAN Reticulon-like protein; Found in the gene: LotjaGi6g1v0204200 | 11 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 2.13 |