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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0047600 |
| Transcript ID | LotjaGi1g1v0047600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein; TAIR: AT3G59300.3 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WMN5|Y3913_ARATH Uncharacterized protein At3g49140; TrEMBL-Plants: tr|G7KCZ0|G7KCZ0_MEDTR PPR superfamily protein; Found in the gene: LotjaGi1g1v0047600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6509530..6516973) extracted from Lotus japonicus Gifu genome v1.2.
ATCGAATGTGATGACGAGATTAGGGAGAGGCGTACTTGACTGCGAAGCCGGACCTCACATTTGATTCAGTAGTTTCCACA AACTGACACGCACTCGCACACTCACACTCACACCATTTTCATGCGCGACGCCGAATCACTCATTCTGAACACTGTCGCTT TCATCATCATACTCAGACTCAGACTCAGACTCAGTCAGTTAAACTGAAATCAAAACTCAGCATTCTCTCTCCTTCCTTCC CAATTCCCATGGCTATTGTTCTTCTTCCTTCTGCTTCCTCACTTCCCCCTAGTACTGCTACTGGTGGTACGCAACCTCCT CTCCTCTCTATACATTCTTGAACAACGAATCAGCGGTTTATTCATTCGGTTTAATTTTGAGAACTTGCCGATGATTGTGT ATTCCTGATTGAATGAGTAATCAGCGTTTTATTCATTGCAATTTTTGACAACTTGCTTAATGCTTCATTAGAAATTTCTC GTGCATGCGTATATTCATTCCACTTGTGCTGTGCTGCATCAAATTTTCGCTAGGAAGTTCCATTGGCGGTTTCATGTTTG TAATTTAATAGACAAGAAACTGATGCCATGAAATCAAACATGATTTGTGTTTTTCATTTCATTTCACCAAGTTCTGTGGA GGCCGCGTGATTAATTGCACTAAACAAATTAGGGGAAAAGGTCTCAAGTCTTATCAGGCCGATTTCAGTTTCAAATGAGC GCAATGCAGATTAATAACTCACTTGCTTTCGCAATGCTAGAACAATGGCAGAGAAAAATATATATATATTTTGCTTCTAT TATTATTATTATGTGTTCAGTCTTTGGATTGTAAATAATCCCAAAAAGTTTCAGGGCTAAATGCTGAATTGCCGATGTTA GGAAATCAATTTTGAGGATGGTTAAATCTTTTACAGCTTTCGAGGTTTTCCTTTGCACAAGATTTTTTTTGTGTAATTTT AGATATGTACCTGCACATGTTAGCATCTCTGACCTATATAAACTGAGGTTTCAAATCGTGTTTTGGATGGTGTTTTCATA TTTGTTCCATAATCTGTGTCTTGCAGAAGGGATATGTTACCCCACGACGTCATATGGAATAGCTTGCAATTCCATCAGAT GTCCTATTGATGGCCGAAGGATGCATGATCTTACCAGCACAAGGTCGGGTGGCGTGAATAATGTTTGATTATCTTCGTCC CGAAAATAGAATGATCATTGATCTGTTTGAAAATATGCGCACTGAATGTGGGATCGTTCAGTTTGTAATCAAATTAGCGA ATAGAGATAAGGAAATTAGGGAAATATGCTTTAGATGTAGATCCATATCAATACAATATTCATGCATTATTATGAATTTA TGAGTGACAAGTTTCATCCTACATTTAGTTATATGCACACTTTCAATCACTTGACCTAAAAGCTTATTCTGTTTAACTGA GTCCATGAGTTATTTTTATAACCAACACAGGCTTCCTGGTTGCTAGGATTTAGTTTCTACGCAAGATTTGAGTCATTTGA CTTCTGGTAACCAAATATTTGTTCCATGAAAAGAGGAAATACCTAGATGCCTCGAGATAAGAATGCTATAATTTTTGGAG TGCAACTATCAACCATATCACAACAAATTATTTCACTACAGCCATGAGCCATCTAATTCTTCTGATTCTGCAACCAAATA TTTCATTTACTGTGCTGGTTGAAAATTAACAAAGTTGTTTCTTCTTGAAAGATCTAATATGCTCTGTTCACTGAAAATAG TTTTGGTTATCCTTAGATGCAAAAGTCCATTTTTTGGATCATCACCCTTCCTTTGGCCATCCACGGGACATGATCTAAGC CTTTCAAAGCTTTTCGTTGCTGCGGATTATCCAGATTCTATACCTGATTCATCTAGTGACATGAGTCATCAAGGTTATCA TCCTCTTGAAGAACTGAAGGTTTCTAATGATAGTCAGCCAGCTAGACTCTCCCCTGCTGTAATAGCAAAAACAACAATTG AGGTTTGTATATATATGCTTTTGTGCATATGAAACTGGTTTGTTTGCAATATCTATCTAGGATTACAGACCTAGTAAACA TAATATGATGTTTTCGTTCACGGGATATATTTATGTCGTATCTGTATACTCTGTGTCACCGTGCCCTGTTTGTTGGTATT AGGCTAATGATCACGCTTTGCTAGTTTTTCCTGGAATGGTACACTGTGAACCGCATGCACAGATTTCATGGGCTGAGTAT GAATATCTTATTGATGATTATGGAGGTTTGTGGTCTTTTTTATGGATATCTATTTTCTTTATGAAATATAACTTTGAATT AATTTAATAAATTCACTATTCAATATTTTCTTTGCCCCCCCCCCCCCTTTGTTTCCTGTAGATATGTACATTGAAATATT TGATGGTGCAAACCTTTTGGAAGATTGGGAGGCAAATAACCCCGTGGTAAGAATTTTGTACCCATTTTCGAATGGATTTC TTTGTTAGACATGCAAAGAGATTAGCCTGCATGGCTCAGCTGTTGAGCTTTCCTTTTTTTTCGTTTCTCTCCATCCTTTG TTCTTTTACTTCCTTGTCTTTCTCGTCTGATGTTGATTACTTAAGAAAAACATTCTTTCTTAAATTTGAATTTGATGGAA TTTGAAAGCAGTACGCTTTTTAAGAACCTCCAAATTCTGTGACTTGGAACTGTGTGATGTCTCTTTCTTTTAAGCGTTTT GTTGTTAGTATGATAAGATAATATTATATTTGAGATATGTTTTGTTATTATAAGATTCATTATGGTGTGTATTATCATGT TATCATGTACTGGATACTAGATAGGATTAATTTTGTAGATAATGTTTGAGATAGACCGGGAAACCTATCTTTGAGATAGA CCAGGACACTATATATTGTACTTCTAAGTCAGGTGTAATACACATCAATCATGTTATCAATCAGAAAATAATATTCCTTT CAACCTAGCCTCAGAGCTCCCGATACTGAGGGGCTCTGCTTCCGCATCTTAACCCTAGCCGCCTTCATTGCGCTTTGACT TCATTGTGGATGAACTTGGGTAGCCTTCATTGCATCCATTCTCTGATATTCAACATTTTTGTGTGCCTGACACATCTCAG AAACCCCTTTATCATCGTTGACCGTCATCCACCATCAAAAAATTTCACCTTCATCGCGATTTAGTGAATACTGGACATCA CATTTTGTATTTCTTATTTTAAAGACTTAACACATAGCTTGATGTTGAATTTTAGTTTATGTTATGTTATTTGCATTTTA TTGTATATTTGTATTGGATTTTTTGTTGCAGACTTGTCATTTGCGGGTTTGAATTTAGTGCATAAATTTTTGTATTATTC CTTTTTCATTTTGAATTTTAAAATTTTTATGACCAATTCAGGAGGAGGCAGGGACAAGGGGAAAATATACCTCTAGAGGG GATCAGAGATGGGGACAGGGGAGGGATGTGGGGATGGGGAGGCAGTTTCCAACCGTGCACCAACTTTTTATCTTCATGTT CTTCTTTTCTTTACTGATGCAATCTGAAATCCCAGATAGATTTAATGTTTTCACTCAAACTAGTAAGCCATAGTCATAGA AGAGATACTGCACGTCAAAATATGCAGAATTATTAATACAGAGTGTAGTCAACTTAAACCTTGTATTGGTTTTAGGCTAT TCAAATCTGTTTTTGTGCAATGGCTTGCTAAAAGAGCTACATTTTGTAGTTAGTATGGTAAACTGAAGTAGTTTTCTCAT GGTATTTTCGTGTTCAATCCTTATGTTCGTGTTCGAAGTTTTGAAATTGATATTCAAGGTTTATTTATCTCCAGAATGCT TTGATTGGAATGGACATCCCAATATATGATAATAGAAGGACTGCTAGTGAAGATGCCATTTTCAATAGTGGTGACGATGA TGAATTCCCATTTGATGATGGTTATATTGAGGTTTGCAGTTTAAAATGCATAATTTATGGAATTTAGTTAGTTGTCTTAG TTACTTCATTTCTTTTCTGCATCTTAGAAATTCATATCTCAAGTATATTATTCTGCAAGCAGGTTCTGGAAATGGAAGAT ATTAATACTCCAGTGAATTGGAGACAGCCAGATATTAATAGCTCAGCTCATCCACTTTATTTTTCGAAGTGCTTAACAAA GGTTCCCCCTCCCCTCACCCAACTGACAAAAGCTTATAACTAATAGTTTCAAGTTTAAACATGAGAAAGATTTAATAAAT TCACATCTCTGGAAGAATAATGTTGATTCTCTATGAATTTTCTTCTAGGCTGTCAACATGGAATGTGAGAAAAGTATGAA TTGTCCATCCAATGGTGTTTCTATTCTGGGTTACCTTAGACCTGCTTATGCTGATGAAGAGTCATATGTAAGGAGGATGT ATCCCACTGAAGTAAGTGATGGATACAGCTCAGATAGGAAAGGTATCCAATTTCTTGAAGAATGATATTTAGAATTCTAC AGGTTTCTTTTACACATTTAATATAAAAAAAATTAAAAATCATTGTGGGTTTATCGAGGAGAAACTCTATGGAATGTAGA GATAAAGAACTTATTTTTTTATTCAAGGAATCAAGGATAACAAAAAGTTTCTTGCATTGGAAGTGAAAGGCAAGGATATA ATTATGGTAGGCTAATCTAGTATGCACCATAAGTAGTTTAGTAATTTGTAGCCTGACTTTCATGTGCATCTTATACACTA CATAACCTTCTTACTATTGCTCGTGTCTGAAGAGCATGTTAAAGAGCAGAGTATTCTGTACTTTTCTCTCACAATTTGTA CTTACTGAATTTTGTTGCATAAGGATCTTGTTTAGTTGAATAAAGTTCGTGTGTTTTGTTTATTTGGCATATAAGCCCTG GAACTAGTTGTTTGGATTTCAGCTACTCTTGCTCTTTGGTTTTCTTGTCTAGGGATACCAATCTAGTATTGCAGTATATC AATAGAGCTTGTTAGTTATCATTGCAGTTATGTGAGCATATCGCATCTATGTTATACAGAGCATCCTCTTTCTAAGTAAC ATGCAAGATCTTACTGTGACATAAACAATATCATAGATTCATTGGTAAACTGCCATTTAACATTTCTCCTTTTTAATCTT TAGATGGTAAAGATTTTTATTCAAGTAGTATCAATGATCAAAGAGACACTAGTTTGACACTCTATCGACTGGAGATCGTG AAAATCAAGCTACACTCCGTGTATGGATGTCAGGCATGTATTTAGAAACTGGTTGTGTGTGTGTGTATGCTGAACAGTAC TTTGTGCAATTTGAAGCATTATTTAGAGAACATTAATTTTGTACAGATATATATTAAATAACAAGTTATGCCTGTACAAA AAATTGCAGTCTGACATTAGTTTCCAAGAGTTTCAACGTGCTGAACCTGATATTCTTGTACACTCTTCTTTGGCAATTGT GGAACACTTCAACCAAAACTGTGATGGTGCTCTTAAAGCACTTTGCAAAAAGAAAGGTCTTGATGCTGAGGTAATCCAAT TTTTCGGTGGTTAGTATTTTATTTTAATGCACAATGCCTAAATGGTGAGGTGTATGTCTGTGTTAAAAATCGCTGTCATT ACTTGGCTTCCAGCGAGCACACTTGATTGGGGTTGACAGCCTAGGCTTGGATCTTAGAGTTTTTTCAGGGACAGAAGTAA AAAGTCACCGTTTTCCATTCAAAGTCCAGGTAAGCATCTTGGATCTCTTTGTTTCAATTGAATGTGCATTTTTTCAGGTT GGTTCTAGTATGGATCCTCACCTGAACATCCTGCTGAACATGTGTATTAGTTATTAGAATCATCTAATCCAATCAATTTC CAATGCAAATTTTGAGGGTTGATTGTGTAAGAAGCTGATGAGTTTTGTGCCATCCAGTGTTTGATGTGAAGCTTAACAAA GTAAACCACCAATTTCGTCACCCCTTGACGCCTTTTTTCAACTTAGTCCCCGACTCCCCGTACAAATTTCCCATGACTAG TTCCTGATCTATCTTTCAGTCCTTCACGTTATTCCTTTCCTAAATAGTCCGGGGACTAATTGAAGGACGGGAAGGGAAGA AAGCCCGCGGACTACATTTCGGTGGAATTTTACATGAAAACTAAGTTGAAAAAATGTGTCAAGTTCAGGAATGAAATTGG TAAGCATAACATGATAGTATTATAAAATATCCATCCAATGGAACAAAAAATAATATAATGGCCCAAAAAAATATTTTACC AGCATAGCTTTGTAACTATAATCGGAACCTTATTATTTGAATTTTTTTAATAGTAATATTTGGGGTTTGAGAGGGTCAAG TCTTATCAATCATATTTTCAGCAAAACTACAAGTCCGAGGCTCTTGGTCAGTCAATTTGGCAGGTGTCCACCACATGCTT GTAGCACACTGAAAGAGGATTTAAACATGATTCTCCAGAAGGAATGAAAGTAAACTAACCTGTAGACTGAAAAATAAAAG GGAAGGGAGAAGTACAAGTGTCTAGGGCAACCACTACATCAAATGCAATGAAGGTGCATTGTCATTGGTTGTGTGTGTGT GTGGGGGGGGGGGGGAGGTGATGATCAAAAGAGAGGAACTGTTATGTTTGTCATTGGCCACATGTGAAAGAAGAATTTTC AGTACCCAACTTTCATTCAAGGCTTATTTATCAAGTTGCGCCACTCAGGCTACTGCACTTCATAGACTTGCCCCCTTTCT TATATAACCATTTTTGTGGAATATGCTGGATATAAACATGGTTGAAGAAAAATGTCCTGTATGGTACCTTTTCAAACTCA ATAGTTGAGTTTCTTCCTCTTTGCTTTTGCAGGCTAACTCAGTGTATGCGGCTGAAAAACAGATTTGGCGACTTTTGTTT CCCCCATGTAGGCGAAAAAAGAACACAAAGTCACGGCGGAATGTTTAAAATCGAGTATGAGTTTAGTATCCCTATTCCCT AGGTGACTAGTCCTCATTTTTTCGATTTTGTGATTTCCAAATTGCACTTAGATAGCATGATCTGGAGCAATTAACGTGTT CTTGTATAAATGGTGATCTGTACATTATTTCCAGGTGAGTCCTACAAATAATTTTTCTGACATAAAGTTCAGGTAAAGGG GAAGTAAGGAAATTGTGTCTCTACCAAAGGGGGATTTGTAGCTGCAAGAACCAAACCTAGGCTTCATAATCGAAGTGTTT TGGTCCTTAGCAGCTAAATGAATCCCCTTTTGGCCCTTAACATATTTTTACCCAGGTTGGAAGCGGGTCATACTGCCAAC AATAAGTGGTGCTGAGAGCCTATAAATTTTGTGTTTCGATATATTTACACTCACATTCTTTTCATATCATGCCACATGAT TATGCTGGTAATTTAAATTAGTGTAAAATTGCCTTATAGGCTATAGCTATAGGGGAATAGAGGTACTTGTTAATTTTGAA ATGC
CDS sequence (LotjaGi1g1v0047600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATTGTTCTTCTTCCTTCTGCTTCCTCACTTCCCCCTAGTACTGCTACTGGTGAAGGGATATGTTACCCCACGAC GTCATATGGAATAGCTTGCAATTCCATCAGATGTCCTATTGATGGCCGAAGGATGCATGATCTTACCAGCACAAGATGCA AAAGTCCATTTTTTGGATCATCACCCTTCCTTTGGCCATCCACGGGACATGATCTAAGCCTTTCAAAGCTTTTCGTTGCT GCGGATTATCCAGATTCTATACCTGATTCATCTAGTGACATGAGTCATCAAGGTTATCATCCTCTTGAAGAACTGAAGGT TTCTAATGATAGTCAGCCAGCTAGACTCTCCCCTGCTGTAATAGCAAAAACAACAATTGAGGCTAATGATCACGCTTTGC TAGTTTTTCCTGGAATGGTACACTGTGAACCGCATGCACAGATTTCATGGGCTGAGTATGAATATCTTATTGATGATTAT GGAGATATGTACATTGAAATATTTGATGGTGCAAACCTTTTGGAAGATTGGGAGGCAAATAACCCCGTGAATGCTTTGAT TGGAATGGACATCCCAATATATGATAATAGAAGGACTGCTAGTGAAGATGCCATTTTCAATAGTGGTGACGATGATGAAT TCCCATTTGATGATGGTTATATTGAGGTTCTGGAAATGGAAGATATTAATACTCCAGTGAATTGGAGACAGCCAGATATT AATAGCTCAGCTCATCCACTTTATTTTTCGAAGTGCTTAACAAAGGCTGTCAACATGGAATGTGAGAAAAGTATGAATTG TCCATCCAATGGTGTTTCTATTCTGGGTTACCTTAGACCTGCTTATGCTGATGAAGAGTCATATGTAAGGAGGATGTATC CCACTGAAGTAAGTGATGGATACAGCTCAGATAGGAAAGATGGTAAAGATTTTTATTCAAGTAGTATCAATGATCAAAGA GACACTAGTTTGACACTCTATCGACTGGAGATCGTGAAAATCAAGCTACACTCCGTGTATGGATGTCAGTCTGACATTAG TTTCCAAGAGTTTCAACGTGCTGAACCTGATATTCTTGTACACTCTTCTTTGGCAATTGTGGAACACTTCAACCAAAACT GTGATGGTGCTCTTAAAGCACTTTGCAAAAAGAAAGGTCTTGATGCTGAGCGAGCACACTTGATTGGGGTTGACAGCCTA GGCTTGGATCTTAGAGTTTTTTCAGGGACAGAAGTAAAAAGTCACCGTTTTCCATTCAAAGTCCAGGCTAACTCAGTGTA TGCGGCTGAAAAACAGATTTGGCGACTTTTGTTTCCCCCATGTAGGCGAAAAAAGAACACAAAGTCACGGCGGAATGTTT AA
Protein sequence (LotjaGi1g1v0047600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIVLLPSASSLPPSTATGEGICYPTTSYGIACNSIRCPIDGRRMHDLTSTRCKSPFFGSSPFLWPSTGHDLSLSKLFVA ADYPDSIPDSSSDMSHQGYHPLEELKVSNDSQPARLSPAVIAKTTIEANDHALLVFPGMVHCEPHAQISWAEYEYLIDDY GDMYIEIFDGANLLEDWEANNPVNALIGMDIPIYDNRRTASEDAIFNSGDDDEFPFDDGYIEVLEMEDINTPVNWRQPDI NSSAHPLYFSKCLTKAVNMECEKSMNCPSNGVSILGYLRPAYADEESYVRRMYPTEVSDGYSSDRKDGKDFYSSSINDQR DTSLTLYRLEIVKIKLHSVYGCQSDISFQEFQRAEPDILVHSSLAIVEHFNQNCDGALKALCKKKGLDAERAHLIGVDSL GLDLRVFSGTEVKSHRFPFKVQANSVYAAEKQIWRLLFPPCRRKKNTKSRRNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| Phobius | 13 | 19 | 7 | - | – | |
| PANTHER | 18 | 450 | 433 | 2.7E-181 | – | |
| PANTHER | 18 | 450 | 433 | 2.7E-181 | – | |
| Phobius | 20 | 453 | 434 | - | – | |
| SUPERFAMILY | 271 | 437 | 167 | 4.71E-14 | – | |
| Gene3D | 355 | 447 | 93 | 6.3E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0047600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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