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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0048200 |
| Transcript ID | LotjaGi1g1v0048200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alanine:glyoxylate aminotransferase; TAIR: AT2G13360.1 alanine:glyoxylate aminotransferase; Swiss-Prot: sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase; TrEMBL-Plants: tr|A0A1J7HP55|A0A1J7HP55_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0048200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6609302..6613705) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAGATGGACAATGCACCCGGACGACACCATCTGTTTGTTCCAGGGCCTACGAACATCCCTGAACAAGTGATTCGGGC TATGAACCGAAACAATGAGGACTACCGTGCTCCAGCAATACCAGCACTGACAAAAACTCTGCTTGAAGATGTGAAGAAGA TTTTCAAGACTAGCACTGGAATCCCATTTCTTTTCCCCACAACTGGTATTGTATACATGGACATGCCATATTGTTGTTCA TTGTATTTGTATTATGTGGTATATAGTGTGAAATATAGTCCATTATACTCTTGTCTTACTTACTCATAACTCATAAGGAA TCAGGATTGTGCTCAGTTAACCATATCAGATACCTATTTCAGATTGATGACCCAAATGCATCTATTAAATACTTAGTCAA CAATCTTGATCATTCAAGCTCAATTTATTCCTTTGATTATATCAAAATTTTGGAGTATATTATTTGGATTGGAAAATTTT GAACTACATGTGCGCCCAAAGGCACTCTGACGCTCAAGTCAGACTAGAGTATTTTGACAGTGTTTATACCTGGTTTACCG TTGGTCCTCCTCGTCTGTATAGCTCAGACAACCTAACTAACTTGACATAGCTGGCCTAACGAACTAGCATAGTCATGGTC TTCCAAGAGTCTAGTCCGATCCTCGCCCAATAGTGATTGACTTACTTGGGCCGACTGGCTGTATCTTGGCCCATAGCAAC GTGAAACTTGACTGCTGAGTTCTTAGATGATATCATAGAATACTAGTTATAGTTAGTGTTGTATTACATTGTTCTAGTTC CTTGTGGTGTGTTTGTCTGATTGTATTTTGAAGGTTACAAACATAACAATGATGCTAAGGTTAATACAAGAAGAAAAATA GTAGTCTTTTTTTGGGTTGGTATTGTCGAAAAATTGTTGCTTTTACTTGCCTATCACATCTTCTGATTAAGTAATGCTCC TGCATTTGTTTCAGGCACTGGTGCATGGGAGAGTGCACTGACAAATACCTTATCTCCTGGGGATCGTATTGTATCTTTCC TGATTGGCCAATTCAGCTTGCTTTGGATTGACCAGCAGCAACGCCTCAACTTCAATGTTGATGTTGTGGAAAGTGATTGG GGCCAGGGTGCCAATCTTGATGTTCTGGAATCAAAACTTGCTTCAGATAGAACACACACCATAAAGGCTATTTGCATTGT TCACAATGAGACTGCAACCGGGGTCACCAATAACTTGGCCAAAGTGAGAAAAATTCTCGGTGAGCATGCCATGACTTGTC TTCTGCTAATGATGCCGTATCATATCTTCTGGTGTCATCATTGTACCTTTGCATGTAGATGTATTGATATGTGCTTGCCC TTTCATGGAATAAAGATTCTGTAACTGCAAAGTCTTCTTTAGGAACTAGTTGTATTAGGATAGCAGCAGAGAGAGAAGAA CATCAATATAGCATTTTGACATTATTTATGTGCTGAAGCTTCCCAATTTGCTGTGTATCTTGAAATTTGTGCTACTTTGT TGGTCATGTTTCCTTGAATTCATTCCTATGACCTTAGTATGCATCTGAAACTTGGGCAGAATATTGACATGCAACATCAT TGAACTCAAATGTTATATCTTGGGTTTCATGACAAATATTTGATTTGACAAAGATTTTCTAGACTCCTAATAGCATGTTT GGAAATCCTTCTACTAGTGATTCTAAATTCAGAATCAATTTCTTGGAGGAACTTCTATGAGTAGCTTCTGGCTTCTAGGT GCCATTCTGAGAAAAATATGCTGATCCAAACATGTTATAAATTGAAATAAGTTTTATTAGTCTTCGACACAAATATGTTT TTTATAATGTTTTTTTCTATTCTATAACAAATTGGTTCTCACATTGTATTTTGGGCACTCAGATGACTACCAGCATCCAG CCCTTCTTATTGTGGATGGAGTGTCTTCCATTTGTGCTCTCGATTTCCGCATGGATGAATGGGGAGTGGATGTGGCCGTG ACTGGCTCCCAGAAAGCTCTTTCCCTTCCCACTGGGTTAGGCATTGTCTGTGCAGGTCCTAAAGCCATTGAGGCTTCAAA ATCTGCCAAATCACTCAGAGTTTTCTTTGACTGGAATGACTACTTGAAGTTCTACAAGTTGGGAACATATTGGCCTTACA CTCCTTCCATTCAGTTGCTCTATGGTCTCAGAGAAGCTCTTGACCTGATTTTTGAGGAAGGACTTGATAATGTGATTTTA AGGCACAAACGTTTAGGCCATGCAACCAGGTGAGTGAGGCATACCATAATTTTCTCATTTAAAATCATTATTACTATGTT TGGGTATCTATTGGTGCTGGTGCAAACAGACACTCACTTCGAGACAAAAAATTGATGAAACCCTTCTTATGGTTGGAATG AAAGTATGTTCACATTGCACTCAATTGACATTCAAATACACACTAAGAACATCTCCAATGCAAGGTTCTTAGTTCTTATT TTTGAGTGAAGAACTAAGAACTAAGAACTTTACCACTGGAGGTGCTGACATGGAGCTCTTAGTTCTTAAAAATAAGAACT CAGTTCTTAGAGCATCTCCAATGCTAGTTCTTATTTCTTAGTTCTCAGCACTGTTCATGTGGGCTCGTATTGCCACATGT GCTTAAGCAACTCTTAAGCAATTTTGCTCCAACCATGAGTTCTTAGTTCTTACCACTATTCATTTGGTCCCACCAACCAC ATTATTTATACTTTTTATTTTCATAAAGTAAAAAACAAAACTCATAAAGTAATAAAGTAAATTGGATGAGAGAGAAATAA TTAATATTTTAAGCTAAGAACTCATAAAGTAAAACTCCTAAGAGCATCTCCAATGCTAATTCTTATTTCTTAGTTTTTAG CACTATTCATGTGGGCCCGTATTGCCACATGTGTTTAAGCAACTCTCAAGCAATTTTGCTCCAACCATGAGTTCTTAGTT CTTACCACTATTCATTTGGTCCCACCAACCACATTATTTATACTTTTTTATTTTCATAAAGTAATAAAAAAACCTCATAA AGTAATAAAATAATTTGGATGAGAGAAAAATAATTAATATTTTAAGCTAAAAACTCAAAAAGCAAAACTTCTTATATAAG AACTGAGTTCTTATTTTTAAGAACTAAGGAGTCAATGTCAGCACCTCCAATGGTAAAGTTCTTAGTTCTTAACTCCAAAA TAAGAACTAAGAACCTTGCATTGGAGATGCTTTTATACTACTACTGTGGTATTGAGTAGTTTGTGCTCCCTCTCTCACAA ATGAGTGGTTAGCTCTTTTTTATTCAAAATAATTAAAAGAAAAAAAAAACTAACTATAAGAGGACAAGTGTCTATATTGT AAAGGGTGCAGTACATACTACATGAACACCTAAAAAATCCCATTATTAAGGGCAGCCCCTCCTCCCCTGAAACATCATTA ACTTAACACTAATGTTTCAGAAACACCTCATTTCCACCTTCACCTAGAATGACAAGGGATAAAAGAGAGATAAGTGAGAG ATATGATCAGTGTTTTGATAGAAAAAGAGAAAACATTAGGGAGAAAAAAGAGTTGGAACTCGAATGAAAAAGGAAGTGGT GTGGATATATCAAAGTTGATTAACTTAGAATAATCATTGTCTAGAGTTCTTACTTTAGGGTAAAGATGTCTGAAATTTGA TAAAGAATTTTAACTTTTTACTATATTGTAAATAAAGAATCCGATAAGTTCTCAATCTGCCAAATGCAGGCTTGCAGTTG AAGCATGGGGTTTGAAGAACTGCACCCAAAAAGAAGAGTGGTACAGTGACACTGTGACTGCAGTTCTTGTTCCTCCTTAC ATTGATGCTGCTGAAGTAGTTAGAAGGTCATGGAAGAGATACAACATGAGCTTAGGACTGGGATTAAACAAAGTTGCTGG GAAGGTTTTCAGAATAGGACATCTTGGCAACTTGAATGAGGTAAATACTTATTTCTCAATCACCCATCATCTGAGCAATG AGAATCACTGTATTTGAGCAATGAGAATCATAATTATTCTCTCTTGCCATTACATTAATTTTCAATCTCTGAACTTGCTC AATCTTACTAACATGTTATCAGAAGTATGCTAAGAATATGTAGCAGCAAGATTCTGTTCTATTTCATTAGATCATTTTTA AGCTAAAATGTAATATAAAATTATTAATGTCAAGAGTTATCATTTACTAAATTACTTCAGAGTTGCTACATTTGGTATAG TTATTTCTTAAAAATGTATTTTGCAGTTGCAACTCTTGGGTTGTCTTGCTGGTGTGGAGATGATACTGAACGATGTGGGA TACCCTGTAAAGCTTGGAAGTGGAGTTGCTGCTGCTAGTGCATACTTTCAGAATAATATTCCTATGATCCCTTCCAGGAT TTGA
CDS sequence (LotjaGi1g1v0048200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAATGCACCCGGACGACACCATCTGTTTGTTCCAGGGCCTACGAACATCCCTGAACAAGTGATTCGGGCTATGAA CCGAAACAATGAGGACTACCGTGCTCCAGCAATACCAGCACTGACAAAAACTCTGCTTGAAGATGTGAAGAAGATTTTCA AGACTAGCACTGGAATCCCATTTCTTTTCCCCACAACTGGCACTGGTGCATGGGAGAGTGCACTGACAAATACCTTATCT CCTGGGGATCGTATTGTATCTTTCCTGATTGGCCAATTCAGCTTGCTTTGGATTGACCAGCAGCAACGCCTCAACTTCAA TGTTGATGTTGTGGAAAGTGATTGGGGCCAGGGTGCCAATCTTGATGTTCTGGAATCAAAACTTGCTTCAGATAGAACAC ACACCATAAAGGCTATTTGCATTGTTCACAATGAGACTGCAACCGGGGTCACCAATAACTTGGCCAAAGTGAGAAAAATT CTCGATGACTACCAGCATCCAGCCCTTCTTATTGTGGATGGAGTGTCTTCCATTTGTGCTCTCGATTTCCGCATGGATGA ATGGGGAGTGGATGTGGCCGTGACTGGCTCCCAGAAAGCTCTTTCCCTTCCCACTGGGTTAGGCATTGTCTGTGCAGGTC CTAAAGCCATTGAGGCTTCAAAATCTGCCAAATCACTCAGAGTTTTCTTTGACTGGAATGACTACTTGAAGTTCTACAAG TTGGGAACATATTGGCCTTACACTCCTTCCATTCAGTTGCTCTATGGTCTCAGAGAAGCTCTTGACCTGATTTTTGAGGA AGGACTTGATAATGTGATTTTAAGGCACAAACGTTTAGGCCATGCAACCAGGCTTGCAGTTGAAGCATGGGGTTTGAAGA ACTGCACCCAAAAAGAAGAGTGGTACAGTGACACTGTGACTGCAGTTCTTGTTCCTCCTTACATTGATGCTGCTGAAGTA GTTAGAAGGTCATGGAAGAGATACAACATGAGCTTAGGACTGGGATTAAACAAAGTTGCTGGGAAGGTTTTCAGAATAGG ACATCTTGGCAACTTGAATGAGTTGCAACTCTTGGGTTGTCTTGCTGGTGTGGAGATGATACTGAACGATGTGGGATACC CTGTAAAGCTTGGAAGTGGAGTTGCTGCTGCTAGTGCATACTTTCAGAATAATATTCCTATGATCCCTTCCAGGATTTGA
Protein sequence (LotjaGi1g1v0048200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNAPGRHHLFVPGPTNIPEQVIRAMNRNNEDYRAPAIPALTKTLLEDVKKIFKTSTGIPFLFPTTGTGAWESALTNTLS PGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKLASDRTHTIKAICIVHNETATGVTNNLAKVRKI LDDYQHPALLIVDGVSSICALDFRMDEWGVDVAVTGSQKALSLPTGLGIVCAGPKAIEASKSAKSLRVFFDWNDYLKFYK LGTYWPYTPSIQLLYGLREALDLIFEEGLDNVILRHKRLGHATRLAVEAWGLKNCTQKEEWYSDTVTAVLVPPYIDAAEV VRRSWKRYNMSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILNDVGYPVKLGSGVAAASAYFQNNIPMIPSRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 394 | 394 | 5.9E-121 | ||
| PANTHER | 3 | 385 | 383 | 4.6E-172 | – | |
| PANTHER | 3 | 385 | 383 | 4.6E-172 | – | |
| SUPERFAMILY | 6 | 373 | 368 | 5.64E-94 | ||
| CDD | 9 | 369 | 361 | 4.08356E-176 | – | |
| Pfam | 10 | 316 | 307 | 3.7E-32 | ||
| Gene3D | 14 | 382 | 369 | 2.0E-118 | ||
| Gene3D | 19 | 267 | 249 | 2.0E-118 | ||
| ProSitePatterns | 190 | 210 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi1g1v0048200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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