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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0048800 |
| Transcript ID | LotjaGi1g1v0048800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT3G07970.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P35336|PGLR_ACTDE Polygalacturonase; TrEMBL-Plants: tr|G7IGR9|G7IGR9_MEDTR Polygalacturonase; Found in the gene: LotjaGi1g1v0048800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6740084..6744153) extracted from Lotus japonicus Gifu genome v1.2.
CGGTTTTCTATAAGTACATAGCATTACCACTTCATTTGGCACATTACCACAAATCTCTTCGACTACCCTCCATTCATTTA TTTCTTTTCAGTTTTCTCACAATGTGAAACATCAAAATGTCTCCACAAACACCAATTATCTCATTTCTCATCATCCTCAC CTCATTACTCTTATGTAACGGTTATTACATAGAGGAACCACTTCATGAAACAAAATATGAACAATTTGGTCACTACTACA ACCCTGTGCATGAGGAGAGGTTGATCAAAAGAGAAAATGGACATAATTTGGATCACTACTACACCCTTTGATCAGAGAAA AGCATGAACATTTTGGTCATGTAACAAGGGCCAATAATAGAGCTACCCCTCTTTTTTCAAGGCCTGGTGGAACAGTTAGT GTTGATGATTTTGGAGCCAAAGCAGATGGAAGAGATGATACCCAGGTAAATATATCTTATCAACAAAAGGATGAAACTTT TTTTCCATGTGAATTTAATCCATTTTTAAAGCCTATCAATTATCTTTTCTTTTAACTTTTTCTCATGCACTTCAGGCATT TAAGAAGGCATGGAATGAAGCATGTTCTACTGGGGCTGTCCTTGTGGTACCTGAAAAAAGGGTCTATCATCTTAAGCCAA TCACTTTTTCAGGCCCATACCAACCAAACACTGCCTTTATGGTGAGATACATATTCACAAGTAAATTTCCGTACATGTTT GGATATACTTCTATAATTGATTAATCAATTTTTGAGAGAAGCTTATGTGAATAGCTTTTGTGTGCCAGAATTGATTCTGG ACAAAGAGAAGTTGTTCCAAACATGCTATTAATGAAAAGTAGCTAATTTTATCTTATTTTTTTAACTTTCATGTTCATGA GAAATTCATTGTAATTGTTTCTGTTTTCCTAATCCATCATATTAGCTCCATGGGACAATGGAGGCATGGACTCAAATGTC TGCATATGAAGGAGATAGACAACACTGGATAGTGTTTGACAGTGTCACAAATTTCAAAGTTGATGGTGGTGGCACTTTCA ATGGAAATGGGAAAAACTGGTGGCAAAAATCCTGCAAAACCAATAACAACCTTGTAAGTGGATGTTTAGTTTCACAATTT GCACAGAATCCGATGCAAATTTACTCAGAAGCTGAGACACTTAGCTTTTAATGAGAAGTGATTCCAAACTATTTCATCGT AGAGCTTGTTTCTCTTCCAATTTTATTTATTTTAAGCTTTGTTCTTGTGATTCTGAATATTGACCTTCATTCCATTCCTT TTCTTTCATTGATTCACAGCCATGCAATAATGAACCAAGACCAACGGTAAGCTAACATTCTTCAAACCATGAAGTTTTAC TTACCTAATAGTAATATGTTACAAGGAGCTGATGCAGAGTGTTCTGTTTTTTTAACTGACTTTTTCTTGCTTTTATGGTA AACTTGTTATATAGGCTGTGACTTTCTATCATTGCAACAACTTGAGAGTGAAGAATGTGAGGTTCAAAGATGCACAACAA ATGCATGTAACCTTTCAGGAATGCTTCGATGTTGATGTTTCCAATCTTGTCATCAAAGCACCAGGGGATAGCCCTAACAC TGATGGAATCCATGTCGCAAAAACACAAAATATTGTCATAAGAAACAGTGTAATTGGGACAGGTAAAATCCAAGAATATC AAAGAAAAAATAGTCAATTGGGTTTAGATTTTGTTTTCTTAATTTTTTTGTCATGTTGATTTGAAGGTGATGATTGTATT TCAATAGTCAGTGGGTCAAGAAATGTTAGAGCCACAGATATCACATGTGGACCTGGACATGGAATCAGGTTTATATTCTA AGTTAAGAAATTTGTTTAGATACATTTGAAATAAATTGGTTAAAATGCTGATATAATAATGTTTTGCAGCATTGGAAGCT TAGGAGCTGATAACTCAGAAGCTGAAGTTTCCAATGTGATGGTGAATGGAGCCACCCTAAGAGGAACAACTAATGGGGTG AGAATAAAGACTTGGCAGGTAAGAGTTGGTCTTGAGGTTTTGAAATTTGGTCTGTTAGGCACTCTACAACTTTGACACAG TTAAAAGAATGAAATGGACTAGTGGAGGTTAAGAATAAAACTTGCGAAAAGAAGAATTTCAACTTATCCACTCAATTTGT CCTTTTGGCTTTGTTTAGAATAACCTGGTTAAACTATTGCCCATGAACACCAATTGCCAAATTTTAGGTGCAACACTGAT TATACAAACATTGAGAAGTTGACAAATGAAATTGGAATGTGAGGAAAATAGTGCACTCAAGTTTGACAAATTTCCACTTT GTTGGTTGATGTTTTCTTAACCACCCTTTGGGTTAACAAGCCCTATTAAAAGCTTTATCTAATTATAGCGTGTAAGTTTA TGCAGCAGAAAGTCAGGTAATCAATTTTAGGGAGAAGTTACAAAAAGAGTGTAGCATCTAGGATTATCATGCTTTCATTT GTGTGTCCATCAGAAATCCAAACGTGCTAGTAGTAAAATAAGGGAAAATCTAGTGCTAGCTCCCGCCATGCACAAGGTCT AGAGAGAGGGTAGACTCACTTTGTGTATCTAATGTAGCAGTCTTATTTTACATTTTTGCAAGAGGCCGATTCTACAGCGC TTGAACTTGTGACTGCAAAATCACATGACAGTAACCTTACCATTAAGTCGAGGCTCGCCCTCCCAAACATGCTATTGGTA TTGCTTTTAATTGGCTCAGAGCTAACCACTAAAAGCTACAAGATTCTTCATATAACTACTATATTATTATTTGTGAAAAA GTGTATCCCCAAAGAAAGTTGTGATTGTTATTATGATATCTCATGTACTTTGACAACACAGGGAGGTTCTGGCTATGCAA AAAACATCAAATTCTTGAACATAAAAATGCAAAATGTAACAAATCCCATAATCATAGATCAGAACTACTGTGATCAAGCA GAGCCATGCCAAGAGCAGGTAACAACCAATTTCTCAATCTCCAATCATGAAGAGAACAACCTTTTCATTAAATGTGTGAT AATCATAAATAACCATCTTTGATCAAAATTGCAGGACTCATCAGTGAAATTAAGCAATGTGTTGTATCAAAACATCATAG GAACAAGTGCTTCAGAAGTGGCTATCAAATTTGACTGCAGCAGAACTGTTCCTTGCAGAGGAATCTACCTGCAGGACGTG ATTTTGGAACCAGAAGGAAGGGGTGACACCACTGCTTCTTGTGAGAATGTTAGATATGTGAATAGAGGAAAGTTTTTTCC TCGATGCTCTCCTTGAAGAAATTAAGAAAAGGAAGAGTTTAAGTTACTACCCTTAAAAAAAGGTTACAACAAAAGGTGGC TGTTAGGGTGCAATTGAGGACTGGGTCTTGCACACCTTAGACAACACCACAACAAAATATAAGTTACTTAGAATTTTCCA TAAAGATATGTTTCATTTTCAACAAATAAAAAAGCTATGTTCTTAGTCTTTTGCACACTTGAAGATTATTCTATTTATAG GTCGGTAACTGAGAAATAGTTGAGCAGACTTTTGTGGATGCTGCCATTCCTAACGACAGTTTTGCAATGAATGAAGGCAA AATGGGTGAACCAACCGGTCCGGGTCGAACCGGCGAAGTCCGGTTCACTTAAAAGGGGAAAAACTGTTTGGCTTAGGACC CGTATCTGGGCGGGTCGGGCACGCGGGTCTTCTGTAGATCTGGGTTGGGGAGCGCCGGAAAGAAGAGGATTAGCGCCGGA GAGGGAGCGTCGTGAAGGAGGAAGGCAAGGCGGCGTCAGCGGAGCGCTAGCGGGACGGTAGGAAGGCAGCTTGGTGCGCA GGGGCGCGTGGTGAGTCGCGGGCAGGGAGGCTCACGCGAGGTAGCAACGATGCTGGCGGCGAGTGGGTTCTGCAACAGAT GTTAGATTTATTTATAATTAACTCTCTTTTTTGTTATGTGGATTAACATTATCAATTAATTAGAATATATTTTGTTTGGT CATTAATATCAATTATGTGAATTATTAATTTAATTCAATTACATGTATTATGATGGATCGTAGATTGAGC
CDS sequence (LotjaGi1g1v0048800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCATGGGACAATGGAGGCATGGACTCAAATGTCTGCATATGAAGGAGATAGACAACACTGGATAGTGTTTGACAG TGTCACAAATTTCAAAGTTGATGGTGGTGGCACTTTCAATGGAAATGGGAAAAACTGGTGGCAAAAATCCTGCAAAACCA ATAACAACCTTCCATGCAATAATGAACCAAGACCAACGGCTGTGACTTTCTATCATTGCAACAACTTGAGAGTGAAGAAT GTGAGGTTCAAAGATGCACAACAAATGCATGTAACCTTTCAGGAATGCTTCGATGTTGATGTTTCCAATCTTGTCATCAA AGCACCAGGGGATAGCCCTAACACTGATGGAATCCATGTCGCAAAAACACAAAATATTGTCATAAGAAACAGTGTAATTG GGACAGGTGATGATTGTATTTCAATAGTCAGTGGGTCAAGAAATGTTAGAGCCACAGATATCACATGTGGACCTGGACAT GGAATCAGCATTGGAAGCTTAGGAGCTGATAACTCAGAAGCTGAAGTTTCCAATGTGATGGTGAATGGAGCCACCCTAAG AGGAACAACTAATGGGGTGAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCAAAAAACATCAAATTCTTGAACATAA AAATGCAAAATGTAACAAATCCCATAATCATAGATCAGAACTACTGTGATCAAGCAGAGCCATGCCAAGAGCAGGACTCA TCAGTGAAATTAAGCAATGTGTTGTATCAAAACATCATAGGAACAAGTGCTTCAGAAGTGGCTATCAAATTTGACTGCAG CAGAACTGTTCCTTGCAGAGGAATCTACCTGCAGGACGTGATTTTGGAACCAGAAGGAAGGGGTGACACCACTGCTTCTT GTGAGAATGTTAGATATGTGAATAGAGGAAAGTTTTTTCCTCGATGCTCTCCTTGA
Protein sequence (LotjaGi1g1v0048800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHGTMEAWTQMSAYEGDRQHWIVFDSVTNFKVDGGGTFNGNGKNWWQKSCKTNNNLPCNNEPRPTAVTFYHCNNLRVKN VRFKDAQQMHVTFQECFDVDVSNLVIKAPGDSPNTDGIHVAKTQNIVIRNSVIGTGDDCISIVSGSRNVRATDITCGPGH GISIGSLGADNSEAEVSNVMVNGATLRGTTNGVRIKTWQGGSGYAKNIKFLNIKMQNVTNPIIIDQNYCDQAEPCQEQDS SVKLSNVLYQNIIGTSASEVAIKFDCSRTVPCRGIYLQDVILEPEGRGDTTASCENVRYVNRGKFFPRCSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 311 | 311 | 1.3E-193 | – | |
| PANTHER | 1 | 311 | 311 | 1.3E-193 | – | |
| Gene3D | 2 | 305 | 304 | 1.6E-99 | ||
| Pfam | 2 | 298 | 297 | 8.1E-96 | ||
| SUPERFAMILY | 3 | 310 | 308 | 8.27E-101 | ||
| SMART | 96 | 122 | 27 | 210.0 | ||
| SMART | 123 | 144 | 22 | 400.0 | ||
| ProSitePatterns | 153 | 166 | 14 | - | ||
| SMART | 176 | 197 | 22 | 140.0 | ||
| SMART | 205 | 226 | 22 | 3100.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0048800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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