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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0050100 |
| Transcript ID | LotjaGi1g1v0050100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LATERAL ROOT PRIMORDIUM 1 family protein; TAIR: AT5G12330.4 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q94CK9|LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1; TrEMBL-Plants: tr|I1JIY0|I1JIY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7001965..7009013) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAGACCCATAAACAACTTTCTAGGAATCCATAGAGAGAAACAAAGAAAGAAAAGAAGGAAAGGAAAGGGAAGGACTT GAGTGGGAAAAGCTCAGAGAAAGAATAAGCTAATAGAAGGAAGAGAAGAAGATGATGATGAAGTGAAAGAGAGAGAGAAA GTAAAGAAAGAAAGAAAAAGGAACATAGAAACACACACAGTGAGTGAGTTAGTGAGAAAAAGTCGTTATTGCATTTTCTC ATTCATTCACTGCTCTCACTCTGCACACTCCAGAAAACTGAGTCCCCTCTCTCTCACTCACAAACCAAAACTTTTTCTTC CTCTGGTAAAAAGCCAAAGTGACAGTAATACTAGTAGCAGCCAGCAGCAGAGAAACATCAGAACAAGAAGCAGAGAAACA TCAGAACAAGAAGCAGAGAAAACAAACTTGTTCCTCTTCTTCACACACACACACACCCCACTTGCTACCAACACAAGATC ACAATCAAACCACATCTAAAACTTTCCATCTTTTTCTTTATTTCTTCCAAAAAATTAAATTAAATTGTTCTTTCTCTGAT ACACTTGCAGCAGCAGAGTGAGAGAGAGAGAGTAAGACCCCACAATCACACAAATAACACCCACATTAGATACTCTCACA GACACCATATATAGTTACACATAACTAATTTTCCTTCCAACTTCTCAGAAGATCTATATATAAATCTTCCACCTCCTTTA TTCATCACCATCATAACAAAAAATCAAAGACATAATTTGTTATTTATTTATTTTTATTTTTGAGATATTATCAAACACTT TCAGTTGTGGCTACTACAAGGAGGTTGCAGCCTTCAGATTCTGGCGCTTTTGCAGACTGGGCAGCAGCAACCGCTTCCTC CGCCGCCGCCGCCCGAGCTGACGACCTCTCGCTCGGTTTCAATGCAGTCCCTGCCGCCGCCACCACCGGACCCTCCGCCG GAATCTGGCCCGGCACTTCCAGGTCACCATCTCTCAACTACGCCGGCGTTGCGCCGCCGGAGATGGGCATGTTCGTGGTG GCGCCTGCTTCCTCTTTCCACCACCACCACCATCTTCAACAACATCATCACCACATCCACGACAACAACAACAGCAACAA CCCCATCATCTCCGATCCTCATTCTCTCAACCCTGCTACCGCGCTTGGTGTCGGTGTTATCCCTCTTCTCACCGCCATCG ACAACGACAACGCAACCACCAACATGCTGAGTAGAAGAAACCAAGGAATTCAGTTCTGGCAGGAGCAACAAACCCATCAC CATCATCAAGGGCACTACATGAAGAATAAGCAAGGTAATTTGCTCGAACACAATGTTAGTTCCGGGAATTTGGTTCATCT TGGTGGTGGTGGTGATGCCACCACCACCGGCGGGACCACCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGTA CTAACAGACGGTGCAGGACTTGTTGTAAGAGTCGAGGTTTTGATTGCCCTACTCATGTGAAGAGCACTTGGGTCCCTGCT GCAAGGAGGAGGGAACGGCAGCTCATGACGGCGCCGGGGGCGGCGGCAGCGGTTGCAGGGTCTAGTGGTTCCACTTCCGG TACCAAGAAACCTAGGCTTGTTGGTTCGCAGACTAATACTACTGCTTCTCACACTTCTACTTCTAACACCACTCCTCCTA GGAGCTTTGAAACTAGCTCTAGCCACCAAGGTGAGTGCTTTTTAAAATCACTTCTGTCTAAGTCCATGTTTGGATACCCG GGTAGAAGAAAATCACTGTGAACCAAAATCATGGTGGACTGTAGTAACTATGAGTTTTACATTTGCCCACCGTATGATTT TGGCTTTGGAGTGGTTTTCTGTGTTTTCAAACATGGGCTAAGTAAATATTTCTTGGATATTGTGTGAATTTAGAAGCCAA ACATGCACTTGATTTGTGGTTTTTCTTTAATATGAGACTTCTCCCAATGACAAACATGCGATTAATGAAAATATATGTAT AAACTCATGCAAAATTTTGTATGGATGGTTTTTTTGTTGTTTTTTGATTTGTGTTTGAAGGGTGGAATTTTGTGTGCAGA TGCGAGTTTCAAAGAGACAATGCCTGGTCAAGTGCGTGCACCGGCGGTGTTCAAGTGTGTTCGGGTGACGGCGGTGGAGG ATGGGAAGGATGAGTATGCATATCAGGCTGTGGTGAAGATTGGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCAAGGG CTTGAGAATAGGGATGTGTATTCGAATTTTTCTGAGCTGCATTTGGGTGGTGGGAGTGGCGGTGTTGGTGGTACTGTTGG TGGTGGAGGGAGAAATGGGGCCTCATCTTCTTCACCAATGATGGATCCTTCAGATGTTTATGCAGCTTCAGGTGGGGGAC TACTAGGAGGTTCCTCCTATGGTAATCCAATAAATTGAAATTGAGTGTTTGGTTTTCCAAACAAAAAAAGCAAATATATT GCTACGCTAACTTCAACGATGATCAGTGTTGAGTTCAACAGAAATCAAACATACTCTGAATTTTCTTTCTGAGTACAAGA TGTTAATAGATGGGGCTTCGAGAGGCTGACGTTGTAGTCCTTTGCTGATATTGAAAGAGGTGGGAGGATTAATTTTTCTA CTAGGCTTTGTATCTTTATTGCATGTCACTCTTTTTCCTGCATTTTCCAACTTGATTTTAGTTCTATTCTTTATTCTCGC CTGATTAGTATGCCTTTGTCATTTCATGAGATGATCATTGACTGACAAAGAGTCCCTCATTTTCTAACAATTAGGGATAT AGTTTATGTACCAAATTAACTTAAAATGGAAAGCAAAGTTGGATAAATGTTGTGTTTTACTAGTCTCACCATTGCTTTGA ATATTAATTATCATAAGTGATTGTATCAAATTCTCTACTTTGCTTTGAAGTTTTTTGTTTTTTATAGTGTTTTACTCCCC TTCTGTTTCTATTGTTTTAGATTTAAAATTTGTCAAAGGTGAAATCTGCAGTGTAAAGTATATGATAATGATGTATTTTT AAATATTAATATTTTATGATGGTTGTTATTGCTGGACAATGAGTTCATAATGCTAAATATATATTTTCCTCGAGATATAC TTGGTATGTTGGTATGCTTCCTTTTTTCTGAGTAGACATGATGCACAATTTCAATGTTCCATATTATGATATATATTATT GTCACCTCTTGTGTGTATGTATGTATTTATATATCCCATAGACCAATAGCTAGGTTTTAATTGTATAGACTTAAGCATGG GAAGTAGTTGTAACGTCACCATCATTATATGTCTGTCTTTTTCATCCTAGTTTACTGGTCATCTCTCTGATGCGTAAGCG GCCTGCAAAGTTTCTGCATTCATCAAGACGTGATGTACTGTAATTTCCTTTTGTTCTTGTTTGGAATTCACACAATAGCC ATTACTGATCTTTAAATTTCATCTAACCTATGAGGCTGGTCTCCAATATTATTTCTAGTCAAAATCAATATGTTAAGTGT GTTAGTATATCAGATTTTGTGTTAGGATATCAGATAACAGCAATGTGAACAGATTAACATCTCAATCTATGAGAAGACTC TGTTTGTTTTTGGTCTTGAAGTGCGTGTGAACGTCAATTCAATAACTTGTTTGGATCATTTTATTTTTTCCCATAATCAA TTATTGCACTCAAGTGCTATTTGTAGAAGTTTCTCTAAATAATTGATTTTGACTTTAGAATCAATTGTAGAAATTTTTTC AAACATGCTTGTGTTGCTTCATTTAGACACCATTATGTGCAATTTAGCATGTTTTGATATACATCGGAAAATTATGGCGA GGCAAAATCACGATGGGCAGAAGCAATTTTCTTAGCTTTTGTGATTGTCTACCATAATTTTAGTTTCATTGTGGTTTTCT ACCGTGTATCAATTCTTAAGCTTTATGATGATTATTACACATTGTTTTCTTTTACTAATGAGGACCCATTTAAGATTTTA GAACCCCATTCTTTTTGTTAAGAAAAGAATAGCTATATTATTTGTTATAATATATTATAATTTGTGTGTTGATTTCCTAG ATGTTTTTTTTTTTGTCTATGTTTATATCCCTGATTTCGGGTGAAGCTGCAGTTCATGTCTCTTATTTATATTGGCTAGA TTCCTAGTTGCAATGTCTGGCCATTGATAAACAAATAAATGATTGTCTCTATTCATTGCATATTTGCATTACCTTTTTCT GCACATGCTGCCCCCTTTTATTTGTCTAAACGTATATATTTTTATATATAGATGGATTATGTCATGTGGATTGCAATACA ATTTTTTTAATTAGATTTTAAAATATTGCCTTGCTTGTCTTGTGTTTGTTTTACTATTCTATTCATCTAATGCCTATAGG ATTAATTGCATGTGGTATGAATAGTTAATTAAGATTTGATATTGAGAATGCAATCACATTTGTGTCATCATTCTTACATA CACTTGCATTTTTGATATTTGTTGTCTCAATGTTGAGCTGTCCAACACTGCCTATCATGTCATTGAAAAAGTAATCATTG AGTTTGCCTTTTCATTGGTGGAGTATCAATAACTGTCTCCAGTGAAGTTCACACAAGGGTTGTTTTGGAAAGTAAAATTA TTCATAGTTTCATACACATTCGCATATTGCAGAAATTTTGTAGACACTCACACTAAGAAAAAATAATATATAAAAAGAAG TAATTATTGTGATTTATGACGAATGCGATACAAATAGTGATAGAGAGAAAAAATGGAGTGTCTGCAATGTTTGAGTGTCT CTATGGTGTCTCCATGTTTGAGTGTCTAATTATCATTACGGTTTTGGAAAATTGAACAATTTGATTGTGCCCTTGAATAT GCATTATTTGTTATTTGTCATGCTCTTATCTGTGGGACAATGTGCTTATTTGGTGCTTGGCATTTGTTTTGCAACATGAT ATGAAAGTAAATGGAAAATTGTGATCATTTCAGCTCCTTCATTTGTTTTCTTGTCCAATGTGAATGATTGGATCATATGC TTGGGGTAGCAGTTGTATCTTTTTGTGCTTGGCATTTTTCTCCCTTTATATGTGGGTGTTTTTGTTGTTGGTGTTATTAA TTAGAACCTGATGCAATAATACAACTTCACATGGTTGGTGCAATCATGGAGGGTACATTCAGGTACATACATGTCTTCCC TTGTGGGTGCACCACCCTTGAATTGCTCACATTTTAAAGTACACTTGGATTTTGTGCAATCTGCTTTAGTGATGTTGTGG AAGAAAGTTTGTTATGCTTCTTTTGCTATGCTTTTGATGTCCTCAATTATCATCTCATCTCCATTTGTCATGTTCTGAAA AAAATGGTTTTCTTTTGTTTGAAATATAGTATAAATCACATCTTTCTTGTGTTTTTGCTTGCTTAATTTCTAATACATGG TTATATGTACTCTTGTGTTCTTGGATGTGGATGTTTGTGCTAGTTGTGTTGAATTGATTGTGCTTTACTAGGTTAATACA TGTTTGGAAATCGTCTACAATTTATTTTGAAGGCGCATTTAATCATGAAGAAAAAACTTCAGTGAGTAGTTTGAGTTTCA GAATTGATTTTGATGAAATACAAGCTGATTTAACAAGTTATTGATCTTCTTGACACAGTCCTTGTAATATAGCACACCTT AATTTTGTTGCTTGTCTTTAATTTGCATTGTGATTTCTCTATGCTGGTACGATATTAGTTTCATTAACTTCCATGGCTCC AGAGTTCCTAATTTTGCTTGTGGATGTTGCTGAATGAATTGTTATTTTACTAACCTTTTATTTCTGTCATGTTTAATGTG CTCAGAATGTTCTAATTTTTAGTTACAATTGAATGTTTGATTGTGTCCTAAGAAAAGTGAATTCTCTTATATGGAATCTG CATACTCGCAGGTTTCAATTTATCTATATATCAATTGAATTGAATTGAATTATGTGATTTGCATACTTGTGGAAATTTCT GCTCTACTTTGTTTGTTACTCTCAATTGATTTCTACATTGTCACACATTGCACTTGTAACTCTATTATCATAGAATTTTC CTGGGCTTTTATACTGGTTATAAATTTATAGGGCTTCTTTGCAAATTTATTTTAACTCAATGTTTGTTAGGTAAAAATTA TCTTTCCACATCTGTGTAGGAACTGTAAGAATTTTTGTCATGATGTGAAGAAATCCAGTACAACTATCATCAGTAAATAT TCTAGCAGCTGTATATTCCAGAGAATATATCTTTATAATCATAGTCAGTTGTATTTATCATTCTCGATAGGGGTGTACAC AGGTTGGTTTGGTTTGATTGTAGATGAAAAATGTAACTGATGCAATTAAACTTGGTCGATTTGGTTTAGGAAAAAAATTC CAAATTTGAACCAAACCAATATGATGAAGAACGAATTGGTTTGATTTCTCCGGTCTACATTCACTAACATGACAAGGAAG AAAATGCAATAAGCTTGAGAAAAATTAAAATTTTCAACCAGTTTTTGGCACATGATGGTTCGTTCGGGTCTAAAGTCTAA GTTTCAAGCCCATAATCCGAACCAATCAACCTCGGGTTTGCATTGGTTTGGTTCAGGTTGGATTTGAAGAGTGAAAAACT TTGAACCAATTGGTTTAGTTCGTCGGGTCAATTTAATCCTCTAGACACCCCTAATTCTCAATAATGATTTTCCTACTATC CCTTACGGAAAATTTTGATTGAATAATTTTCACTAACCCTTGGTGTTTGTCAAGTACCTACTGAAGGCTTATATTTAGTT TTTTATGTATCAAATAGTCTATAATTATTATGTCTAATTCTAAAAAAAATTATGAATGAACACACATGCTAGAATATTTG GAGCTGCTTTTATACAAGTCTCATTGATGTATTTTACTGTCCAACTAACTGTTGACTTTCTGTCGTATGGGTATATGGTT AATTAATTGTTGAACATGATGCAACATTCTTGGCATAATAGGTTTGCAGCTAGTTAAAAATGTTCGTATCCCTTTAATTC TTCTGACAT
CDS sequence (LotjaGi1g1v0050100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCATGTTCGTGGTGGCGCCTGCTTCCTCTTTCCACCACCACCACCATCTTCAACAACATCATCACCACATCCACGA CAACAACAACAGCAACAACCCCATCATCTCCGATCCTCATTCTCTCAACCCTGCTACCGCGCTTGGTGTCGGTGTTATCC CTCTTCTCACCGCCATCGACAACGACAACGCAACCACCAACATGCTGAGTAGAAGAAACCAAGGAATTCAGTTCTGGCAG GAGCAACAAACCCATCACCATCATCAAGGGCACTACATGAAGAATAAGCAAGGTAATTTGCTCGAACACAATGTTAGTTC CGGGAATTTGGTTCATCTTGGTGGTGGTGGTGATGCCACCACCACCGGCGGGACCACCACGTGCCAGGACTGTGGGAACC AGGCGAAGAAGGATTGTACTAACAGACGGTGCAGGACTTGTTGTAAGAGTCGAGGTTTTGATTGCCCTACTCATGTGAAG AGCACTTGGGTCCCTGCTGCAAGGAGGAGGGAACGGCAGCTCATGACGGCGCCGGGGGCGGCGGCAGCGGTTGCAGGGTC TAGTGGTTCCACTTCCGGTACCAAGAAACCTAGGCTTGTTGGTTCGCAGACTAATACTACTGCTTCTCACACTTCTACTT CTAACACCACTCCTCCTAGGAGCTTTGAAACTAGCTCTAGCCACCAAGATGCGAGTTTCAAAGAGACAATGCCTGGTCAA GTGCGTGCACCGGCGGTGTTCAAGTGTGTTCGGGTGACGGCGGTGGAGGATGGGAAGGATGAGTATGCATATCAGGCTGT GGTGAAGATTGGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCAAGGGCTTGAGAATAGGGATGTGTATTCGAATTTTT CTGAGCTGCATTTGGGTGGTGGGAGTGGCGGTGTTGGTGGTACTGTTGGTGGTGGAGGGAGAAATGGGGCCTCATCTTCT TCACCAATGATGGATCCTTCAGATGTTTATGCAGCTTCAGGTGGGGGACTACTAGGAGGTTCCTCCTATGGTAATCCAAT AAATTGA
Protein sequence (LotjaGi1g1v0050100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGMFVVAPASSFHHHHHLQQHHHHIHDNNNSNNPIISDPHSLNPATALGVGVIPLLTAIDNDNATTNMLSRRNQGIQFWQ EQQTHHHHQGHYMKNKQGNLLEHNVSSGNLVHLGGGGDATTTGGTTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVK STWVPAARRRERQLMTAPGAAAAVAGSSGSTSGTKKPRLVGSQTNTTASHTSTSNTTPPRSFETSSSHQDASFKETMPGQ VRAPAVFKCVRVTAVEDGKDEYAYQAVVKIGGHVFKGFLYDQGLENRDVYSNFSELHLGGGSGGVGGTVGGGGRNGASSS SPMMDPSDVYAASGGGLLGGSSYGNPIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 347 | 346 | 1.0E-141 | – | |
| PANTHER | 2 | 347 | 346 | 1.0E-141 | ||
| MobiDBLite | 20 | 40 | 21 | - | – | |
| Pfam | 125 | 285 | 161 | 3.9E-61 | – | |
| TIGRFAM | 127 | 169 | 43 | 5.1E-27 | ||
| MobiDBLite | 176 | 237 | 62 | - | – | |
| MobiDBLite | 185 | 234 | 50 | - | – | |
| TIGRFAM | 237 | 284 | 48 | 1.4E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0050100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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