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IPR007818 is a SHI protein family.
<p>This entry represents a group of plant proteins, including protein SHORT INTERNODES (SHI) and its paralogues from Arabidopsis. In Arabidopsis, the SHI family comprises ten members. They contain a RING finger-like zinc finger motif. SHI may act as a negative regulator of GA responses through transcriptional control binding directly to the 5'-T/GCTCTAC-3' DNA motif found in the promoter regions [[cite:PUB00083348]]. In rice, it regulates tillering and panicle branching by modulating SPL14/IPA1 transcriptional activity on the downstream TB1 and DEP1 target genes [[cite:PUB00099606]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Short internode related sequence [Medicago truncatula] gi|357483599|ref|XP_003612086.1| | 9 | ||
| – | Short internode related sequence [Medicago truncatula] gi|357515113|ref|XP_003627845.1| | 16 | ||
| – | Lateral root primordium protein-related isoform 3, partial [Theobroma cacao] gi|508785658|gb|EOY32914.1| | 9 | ||
| – | JHL18I08.14 [Jatropha curcas] gi|317106677|dbj|BAJ53180.1| | 9 | ||
| – | Short internode related sequence [Medicago truncatula] gi|357483599|ref|XP_003612086.1| | 9 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508728005|gb|EOY19902.1| | 4 | ||
| – | Short internode related sequence [Medicago truncatula] gi|357493963|ref|XP_003617270.1| | 9 | ||
| – | Short internode related sequence [Medicago truncatula] gi|357473439|ref|XP_003607004.1| | 6 | ||
| – | Short internodes [Medicago truncatula] gi|357456471|ref|XP_003598516.1| | 9 | ||
| – | Short internode related sequence [Medicago truncatula] gi|357438147|ref|XP_003589349.1| | 14 | ||
| – | Lateral root primordium protein-related isoform 3, partial [Theobroma cacao] gi|508785658|gb|EOY32914.1| | 9 | ||
| – | Lateral root primordium protein-related isoform 3, partial [Theobroma cacao] gi|508785658|gb|EOY32914.1| | 9 | ||
| – | LATERAL ROOT PRIMORDIUM 1 family protein; TAIR: AT5G12330.4 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q94CK9|LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1; TrEMBL-Plants: tr|I1JIY0|I1JIY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050100 | 9 | ||
| – | LATERAL ROOT PRIMORDIUM 1 family protein; TAIR: AT5G12330.4 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q94CK9|LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1; TrEMBL-Plants: tr|I1JIY0|I1JIY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050100 | 9 | ||
| – | LATERAL ROOT PRIMORDIUM 1 family protein; TAIR: AT5G12330.4 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q94CK9|LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1; TrEMBL-Plants: tr|I1JIY0|I1JIY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050100 | 9 | ||
| – | Protein shi related sequence 1; TAIR: AT1G75520.1 SHI-related sequence 5; Swiss-Prot: sp|Q9LQZ5|SRS5_ARATH Protein SHI RELATED SEQUENCE 5; TrEMBL-Plants: tr|V7AQV4|V7AQV4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0424600 | 9 | ||
| – | Protein SHI RELATED SEQUENCE 1; TAIR: AT3G51060.1 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q9XGX0|SHI_ARATH Protein SHORT INTERNODES; TrEMBL-Plants: tr|V7CMW6|V7CMW6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0386300 | 9 | ||
| – | Lateral root primordium 1; TAIR: AT5G12330.4 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q94CK9|LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1; TrEMBL-Plants: tr|K7KK00|K7KK00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0109800 | 9 | ||
| – | Lateral root primordium 1; TAIR: AT5G12330.1 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q94CK9|LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1; TrEMBL-Plants: tr|G7LG16|G7LG16_MEDTR LRP1 carboxy-terminal domain protein; Found in the gene: LotjaGi3g1v0318100 | 15 | ||
| – | Protein lateral root primordium 1; TAIR: AT2G18120.2 SHI-related sequence 4; Swiss-Prot: sp|Q9SI19|SRS4_ARATH Protein SHI RELATED SEQUENCE 4; TrEMBL-Plants: tr|Q70I38|Q70I38_LOTJA CM0216.460.nc protein; Found in the gene: LotjaGi3g1v0512900 | 8 | ||
| – | Protein SHI RELATED SEQUENCE 1; TAIR: AT5G66350.1 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q9XGX0|SHI_ARATH Protein SHORT INTERNODES; TrEMBL-Plants: tr|V7CD60|V7CD60_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0123100 | 9 | ||
| – | Protein shi related sequence 1; TAIR: AT1G75520.1 SHI-related sequence 5; Swiss-Prot: sp|Q9LQZ5|SRS5_ARATH Protein SHI RELATED SEQUENCE 5; TrEMBL-Plants: tr|I1MY05|I1MY05_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0010600 | 14 | ||
| – | Lateral root primordium 1; TAIR: AT5G12330.4 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q94CK9|LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1; TrEMBL-Plants: tr|V7B6F1|V7B6F1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0180800 | 9 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 4.35 |