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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0050500 |
| Transcript ID | LotjaGi1g1v0050500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein transport protein GOT1; TAIR: AT3G49420.1 Got1/Sft2-like vescicle transport protein family; Swiss-Prot: sp|Q6NMM1|GOT1_ARATH Vesicle transport protein GOT1; TrEMBL-Plants: tr|I3SIP6|I3SIP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0050500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7212649..7220693) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTCTGAAGCTCACATCACATGCTCCTCCCAACCAGTGTAACGTAACCACCTCCATCTCAGAATCCGAACCTCACCAC CACCACCACCACCACCACCAATTCCGGCGACCCTTCCTCCGAATTCCGGTGACGTTACGCTCTTGACACCGGTAACCTTT CCAACTCTCTCTCTCTCTCTCTGTGAATATTTAATTTATATTTGTTTGTACTTTCGAATCGATTTCCTTCTGATGCTAGA AACTAAGATTTAAGATCTCACTGCTTCAATCATCTTCACTTTCTCATCGTTTTGCTTTTCACAAACCTCGAATTTCCTCT TTCTCTGTACCATTCGGTTCAATTCCACAATTGTTGCATGAATTTTCCATACTTCGATCGTAGTTGTCATCAGTGTTTGT CACTGAAGAAGAAAAGTAGAATAATTTTCTCATTCCTCGTTAAATGCTAAGAAACCGCGGCGTTTGACGACTCTGCTCAA CTTCGAGTATTTTGAAATCGAAGAAAGCTAGAAAGTAGAAAATGTTTTGTTTGTGTATTTTGGCATAAAAGCTTTCAGCT CTTAGTTTGTTACTTTATTTGTTAATTTTTTTTCTTCCTTTTTTAAGTAATGCGCTTGTAGCGGATATTGAATTTTAGTT TGATAGATCTAGTGTTTAGTAGTACTGTGAGGTTTTTTTTTTTCATTGTATGAATTTTATGTTGAAGTTGATAGTTTTGT TAATACGAACGATATCCATGATATGTATATTTGCCGACAGGTTTGGATTATCAGGATTGTCGGTGTTTTTATGTTTGATT TAGTGTTGTTAATCACGGATCGCGGGGAAAATAGCGGAAAATCCGCTATTTCAAACCCTCAAAGCGGAAAATAGCGGCAA ATAGCAGAGTAGCGGTGAGCGTTGCGCTATAGCGCCACTATAACCGCTATTTGACAAGTGGTTTGATTTTCATTGATTTC TTGACTTGCATTTTGCCCTAAGGTGAATAGATGCTAACTGGTGGAATTTAACTGAAGAAAGTGTTGGTTAGAAGTTTTTA ATACATATTCATATTGGGGCTCCTAAGTATGGAAAAGCTTAGGAGTATTCTTACAGAATTCATAGATTGTAATTTCTAGC GAATGGCATAATGGTATGATTTATTTAGGTTGACTAACTGATGTCGGCTTATTAAGTCAAGGTGGGGTTCTGGAAAATGT TGGAACCATTATGAGTCTGTTGTCGGCAGCCCTACCTTGCGATAGTAAGAGGCTGATTCCACCATTTGAACCTCGGAACC TGTAATCTCCAAAACACAATTCACAAGGCAGAAACTTCAAATTTTGCACCAAAGCTTCACTTTGGGCTTATTAATTCAAA CCAGCTAAAATTGTTTGTTAGGAAGTTTTACATTGTATGTATGTTCCTACCTGTCCTCATGGGTGGTTGTGATTGCTCTT TTCTTTTACTGTTACACCTGGACGTATATTGTTGCCTGTACTTTACTTTCTTTGAAAGCAAGGTTCTTTATATTTCAGAT TTATTCCAGGGTTTGAAAATTATCTGATTTTTATGGGTGGATAAATTCAAGTTTCGAGTTCACTTGCTGTGTAAATATAT TCTCTTCTCTGATTTCTTACTAGTTGGATTTCCTGGCATTTTTCCTTGGATTAAGATTTTCCTGGGTGGTGATGTTGCAG TGTGATCTTTTAACTAAACTGTCCATAGAGAAGATGATTCTCAGTCATGAATTAACGAGTTCGGTTATTTTGTATTTCAG AGAAGGCGAGATTGAACATCTGGGTTGTTGGTAAAATGGTTTCCTTTGAGATGAATGACCGAAAAAGTAAGTGAATATGA TATTTTTCCGTTTTTGTATCAACAACAAGTATATTATATTAAGTGATTTTCTGTCTTTAATGCTTATGTGTAAGAATGAA TTGTTGTTAAGTTAGCTACGGCTCTTACGTTCTGATTTACGGTTCTCCGATTTACATTCTTTCACTCCCCTCCCAATCCT AAGTAAGATCCATATCTTGACAACATTGATCCTTATCAGTGTTGTCAAATCGCGATCGCGGAATATCGCGGCGAGGCCAA AATCCGCTATTTCATTTAGCGGATAGCGTCGCGGGCAAATAGCGGTATCCGCATAGCGGTTAAAATAAGTAAAAAAAATT ATAGAAAAACAGCTTGTTGTGCTGTTTGTGCTAGTAAAAAACAGTTGCAAAAAATAAATAAAATTAAGACATCTAATGAA ATGCATAAAATGATCATGATAGAACAAATTTTAGACACAAAACAGGGGAAAAAAAACAGAAAATAAAAAAACATTGTATG TAATGGCAAAAATAAACAAAAGATGATGTGAAGAAAGAACAAATATTAAAAACATAGGTTCACATTCACAATGGAAGAAG AAAAACAGAACAGATCATGATGGGAGACGAGAAAAAGGAAGAACAGATATTAGAAACAAAACAGGACGGAAAAAAACAGA AAACAGAGTGTGAAAAAAAAAGAAAAAGAGAGTCTGAAAATGTGCAGAAAGAAGGAAGGGAAAAAGAAAAGTAAAGAAAA CAGGGTATGAAAAAAGTAAACAGAGGCTAAAAACAAAAAACGGAAGAGTACGTAAAAGAAAAAGAAAGAAATAAAAAAAA AAACAAAAAAACAGAGCATGGCAGAGTGAAGAGATGGGAGCCAGAAACTCACCGGAAAAGTCATCAGAAAAGCTATTGGG GTTGCCGGAGATGAGGGTCAGAAGCTTGATGTAGAAGTAGGAAGAGAGAAGGGAAAACTCGAAAGGTTTTGAGGCTTTTA TAGAGTGAAGATTTTAAGTTATAAAACTTTTCTTCCATTAATTGGGTACAATTAATTCAGTCGGTGGCTGATTCCCACCT CCCAAGCGGTGCCTTTTTGAAAAAAAGTCCTAAAATCACACGTGATCTTCTCTTCCACCGCTATTTTCGCTTTGCCCGTC GCGGCGCTATTCAGTTTTGCGGCGCTATTGCGTTTATCGCGTTTGCCGCTACGTCGCGGCGTCGCGATCGCGGCACGGCG AATTTCCGCTACGTTATAGCGGCATAGCGGCGCTATAACCGCTATTTAACAACACTGATCCTTATGATTATAACGTGTTG AACATTTTCTAAATTAGACATCTAGATTCTAGTTAGGATATCACTGTCTACTTAGTTTTGGTGTTTAAGTTCTATATCTT GTGAATTGTCAAAAACTTGATGTTTAATGCTTTGAGTTGTTAGGCTTTTCAATACTTCATGTTTTATGCTTGAAATTCTT ATGAACTATGAATTATGATTTATATGTTATTAGACTGGAGGAAGAAACATTCTTAACACATAATATGTTATTCGATTGTC ATAATGATAAAATGATACAGTGTTCAAGATATATATTAATGCCTTTATGTTGTGGTATCATACAAGCAGGCAGTAGCTTT GTTTTACCTTAACTGTGTATTATTTATTTTTCTGCACTGCATATTTGGTATACTAATGTTCTAGTTGTCAACTTATTTTC ATTTGTATTGTCTATTTAATGTATGTTTTTGGCATGTGCTACAGAGATTGGATTAGGATTAACTGGCTTTGGTATATTTT TCTCTGTCCTTGGGGTTATCTTCTTCTTTGACAAGGGATTGCTAGCAATGGGAAATGTAAGTTTCATTTTATTACAGTTT TCTTGCTTAAGTAATTGCTTCTAATTTGATTTTGCTTAATGACATATTTTCTTTTGCCATGATGTCTTTTTGCCACTCAA ATCAGATCCTGTTCATTTCGGGAGTGTCCTTAACCATTGGGATGAAATCCACTATGCAGTTTTTCATGAAACGTAGTAAC TTCAAGGTAAATTTGTGACTGATTTACTGTTTTTTTACTCCATATCTTGTGCTCTCTTTATGGTAATTTCCCCCCACTCA CCTTTTTCTTTTCTTCAAGGGAACAATCTCATTTGGTATTGGGTTCTTCATTCTCATAATGGGATGGCCAATTTTGGGCA TGATTGTTGAGGCTTATGGGTTCATTGTACTTTTCAGGTTTGGTGGAATTTTATAGAAACTCCTTGATATTTTTATGTTA ATGTGCTTAAAGCTAATGATGGATTATGCTGTGCAGTGGTTTCTGGCCTACACTGTCTGTTTTCGCACAGAAGATTCCTG TTCTTGGTTGGGTGTTTCAACTTCCTTTTATCCGATCGGTAAGCATTTGTGATAAATTGAAATGTCTTCCATCTAAATCT TCTCAGAAGCATCTTAGGCATTTACTAGTCTGGGTGCTACCATATTAATTATCAACGTCATTTAGAAATCTTTAGTCACT GACTTGCTGTGACTGATTGGGGCATCTTAATTTACATTAATAGATGTAAAAAATGATACAGGACAGTGAGTAGAAGTAGC AGTATGAAGAGAATGTCAAACTACAATATTACAATTCTGAAGTTGGAAAAGTACTGTTTAAGCTTAGGTTTAATAACATT AACGTTTTCAATAAGGCTATGTTGAGCTACAAGTTAGGTGGCAAATCCACTGATTTTTACATGTATTATAAAACTTCTTC CTGGAATACCCAACAAAATAAATTTCCTGGTAGGACGAGACGGAAAATCTGGTGTTAATATTTTGTTTGAGCAATCTCTA GATATATTGCTCAATTAAATGTGGAAGTTTTGCCTCACTTCCTCGAGCGTGTTTTTGTTACCGTAGGATCACTGACTTTT TATCTCGATGGAGCAGCCAACCTACTAGCATGTTTGGATTAGCTTCTCTTTCCTCATAATCAATTCTAAAACCCAGAAGC TACTCACAAAAGTTCCTCCCTGTAATTGATTCTGGCTATAAAATCAATTGTAGAAGGATTTCCAAATATGCAAATCGACT TTATGTTTATTGCATTACAAAGTGTGTTTTCATTTATGGTGCCTCATAATGTGTGAATGGTTTTGCAAACATGCTAATTT CAATCTGAGCCTTGGTAATTCTCTGTTCTCTTTGCAGTTATTTGATCGCTATAGAGGCAAACGAATGCCTGTGTAACAGA GGAATCTATTGACACCATATGTAACTGCTGGCAAGTGCTTTTGTAAGTTCATGTAAAGAAACTACTCTCATGTTGGAGAC CTGAATTGAGTTCACATTCTGATGGGAGAAAATGATTGTCGTTTTATCACGATAATCATTTATTACAAAGAAAATAGCTT AGGGAAGAGGTTTTGGTTTTAACTTTACTACTCGTTTTGCTCCTTTTGGTTCTAATGCTAAGTGGAAAATCAATCTATCT TGGGAGTTGTCAATTCTGCAACTTCCTTTGCATTACAATTCCAATCGGAAAACACATTTTGGAAGCATTTCTGCGGTGTA TTAAGGTGGTTGTTTTTGTGTCACAATCATCAAATGGATAGTGATTTTATATGTTAAGTGGAGCAATTTGGAACTATTCC CCCCCCCCCCCCTCCCCGTTTTACCGTATTATCTATTCTTTCAGTTTCGATCTTGTGTTAATTTTTTTGTTGTTGACCCT GTTTTCATTCTACTAAAGATATGCTCAGTTTCATTAACATTTGACGTTTATTTTGATTAGCTATTGATGTGGAATTTCAT GTTATTGCTTTAATATAGTTTAATCATGATTTTATGGTGTCAAGATGGCATGATAAAGGCTTTCCGATGGAGAAAAAAAA ATTATTAAGTGTGAGTCATGGTGTTTTTTTTTTATAATCAATAAGAAATATATTGAATAGAAGTACAAGGGGTACTTCAA CCCAATACAAAAGGAGAAATGATAAAAGAAGCAGATAGAAGAAAAGAGAAAGAAAGTGCAAAGACAGAAGAAAAACATGC TACTACCAAACCCAACCCCACCGCGTACCTCCGGGGAAATGGGCTTTATAATACAGACCTCATTAAAACCTTCCAAGGAT AAAACCCCCTTTGGGAAAACCTTGGCAAGGAAAAAGAGTATCAATATTGTAAAGCCAAAATGAAATTTCCAAGGAGGTTT ACAATTAGAGAATGAACCCAACTAAAAACCACCCCCATATCCACATATCAGGTTGTGCGTGGACTTATCACCATCAATGA GAGCCAGCTTTGACCACCCACGAGTACCAGATCGAAAACTTGTACAAATAGAAAGGCTTGAAAACCACGAATCATTCAAA AGGCCAAGAGTACCACCATGATACCATGTGATATGCCCAGCTCCAACACATTCAAATTCATATGCCTCATCAGACATCTC CCAGGCCATTATAATGATTGCAGACATATACCAGGATTTGAAAGCCATTCATACCAAGAATAATTAAAGTTTTTCACCTT TGTCTTCAACCACTTCCAAGCCAAGAGTTGAATGCTCTCCAGTGTTTTCTCTAAATCCGCTGTTGCCCCGTTGAAAACAT GTCTATTTCTTAACAGCCATAAGCACCAAAGAGTAGCCATCCATATAGTGAAGTCCCCCACTTGCTGCGAATTAGAAGAA CCAGGTAAGGGAAATTGTAGAAAATGCTCCCTTGCAGTGGACGGGGGTACTACAGATATCCCTCTCCAAGCATATATCCC GTACCAAATTCGAACGACATTTGGACATTGAAAAAATAGATGTGAGCCTGATTCTTCCACCTGCAAACAGAAAGAGCATA GTGCATCTTCATCACTAGTAATAACATTCCTCTTTCTAAGATTGTCTCTCGTTTGAATGCGGTCCTGTAATGCTCTCCAA GTGAATGCGCGCAGGTTCGAAGGTGCTGGAATTGTCCAAATCTTCTTGAGCACTGGATCACTAGTCTCCAGGAATTGTTC CTGCAAAAAATTATAAGAAGAATTAACCGAAAAAATTCCCTCCCCCTCAAGCTTCCAACTCCACTCATCTTCTTTGTTTT CTTGCAACTGAATACTCCCCAATGAACCCACCATCTCCGCCAGCCAGCCCACCTCTCTACCTCGCAAGTCCCTTCTCCAC TTAAAGTTCCACTGCCAATCCCCTTCAATCCAGAGTCCCATACTAGCAATAGAGTCTCGTTTCTGTCTTGAAAGGTTATA TAACCTTTGGAAACGCAGGTCTAGGGATCCGTCACCAGTCCAATTTTCCCCCCAGAATTTTGTATGATTGCCGCTCAAGA CTCGCTTCTGAATACATGTGTCAAACCAATTCCACCCATCAAGTACACATGAAGCCTGGACGTCATTCCACCATGGAGAG CCCCCTTGTTCAGCAGCCCTCACTTGAATCACTTTACTCCATAAACTATGTGGCTCCCGTAGGTACCTCCAAAGCCATTT ACTGAGTAAAGCCATGTTAAACAGTCTCCAATCCTTAATGCCCAAACCGCCATAGTCCTTAGGCAAACAAATCTTTGCCC ATTTCACCCAAGCAATCTTGCTTTCATTCTCCTTACCGCCCCATAGGAAATTACGCATTATTCTAGTGCATTCCTTGAGA ACCCCACACGGTAACTTAAAGAAGGACAGATAAAATAATGGAATTGCAGAAAGAACACTTTGAATGAGGCAAATCCGGCC CCCGAAGGAAATGTGTTTTTGTTTCCACGCTGAAAGCTTCCCTTTTAGCTTCTTAATAACTGGTTCCCACAGTGCTAGCG AATTTGATCGCCCTCCAACTAAAACTCCCAAATAGATGAAGGGGATTGCCATTAATTTACAGTGTAAGATTGAAGCAAAC CTCCTCATCTCGCCACCATCCACCCCAATGCCTGCTAGTTTGCTTTTGTAGAAATTGACTTTGAGTCCTGACACCATCTC AAAACACCTCAGGACACATTTCAAAGTAAACACATTTTGAGTTGTTGCCTTACCCGCAAAAATGGTGTCATCTGCAAATT GTAACATTGACACTTCCACCTCACCAGTGTTTCCAAATCTGAAGCCTTCAAATCTGCCCAAGCTCACTGCTCTATTAAAC AACCCACCTCACCAGTGTGAGTCATGGTGTAACTTAATCTCTAATTTCTTGTTACATTAGTATTTCTATTGTGTTTGACT AATATTAACTAGCAGGAGGATAAGGGCAATTATGATTCATTCACA
CDS sequence (LotjaGi1g1v0050500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCCTTTGAGATGAATGACCGAAAAAAGATTGGATTAGGATTAACTGGCTTTGGTATATTTTTCTCTGTCCTTGG GGTTATCTTCTTCTTTGACAAGGGATTGCTAGCAATGGGAAATATCCTGTTCATTTCGGGAGTGTCCTTAACCATTGGGA TGAAATCCACTATGCAGTTTTTCATGAAACGTAGTAACTTCAAGGGAACAATCTCATTTGGTATTGGGTTCTTCATTCTC ATAATGGGATGGCCAATTTTGGGCATGATTGTTGAGGCTTATGGGTTCATTGTACTTTTCAGTGGTTTCTGGCCTACACT GTCTGTTTTCGCACAGAAGATTCCTGTTCTTGGTTGGGTGTTTCAACTTCCTTTTATCCGATCGTTATTTGATCGCTATA GAGGCAAACGAATGCCTGTGTAA
Protein sequence (LotjaGi1g1v0050500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSFEMNDRKKIGLGLTGFGIFFSVLGVIFFFDKGLLAMGNILFISGVSLTIGMKSTMQFFMKRSNFKGTISFGIGFFIL IMGWPILGMIVEAYGFIVLFSGFWPTLSVFAQKIPVLGWVFQLPFIRSLFDRYRGKRMPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 140 | 140 | 1.6E-71 | – | |
| PANTHER | 1 | 140 | 140 | 1.6E-71 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| Pfam | 21 | 115 | 95 | 6.8E-13 | ||
| Phobius | 33 | 37 | 5 | - | – | |
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 38 | 54 | 17 | - | – | |
| Phobius | 55 | 74 | 20 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 75 | 104 | 30 | - | – | |
| Phobius | 105 | 109 | 5 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 110 | 130 | 21 | - | – | |
| Phobius | 131 | 140 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0050500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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