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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0051100 |
| Transcript ID | LotjaGi1g1v0051100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Crt; TAIR: AT5G12170.2 CRT (chloroquine-resistance transporter)-like transporter 3; Swiss-Prot: sp|Q8RWL5|CLT3_ARATH Protein CLT3, chloroplastic; TrEMBL-Plants: tr|G7K322|G7K322_MEDTR CRT (Chloroquine-resistance transporter)-like transporter, putative; Found in the gene: LotjaGi1g1v0051100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7258645..7264605) extracted from Lotus japonicus Gifu genome v1.2.
CAATGCAATAGACTACAAAATTGTAATTGGGAGCACTCATGAATAACATGACCAAAAATACAAAAAACATTATGATTGTA ATGTGTAGATTATAAGAAAATGTGTAAATTTGAGAAAATGAAGATACAAAATGCAAGTTGTATTTGTGGTTCATATATTT TAATGTAGACCAGTCTGGTGATGATGTGATCAGTGATTCAGCAATAATCATATCATCATACCATATGATAAGATCACAAA CTTAAAAAGAGCATAGTGAAAGGGATAATGCTTCATAATAAATAAGGCCGTGTTTGGTTCATACATAACCATATTCACAT TCTCTGTACTATTGATCATGGCCTTATTTTTCCGGCAATTATCCGGCGGCGGCGCCACCACATCGTGCGGCCATGTTCAA CTCCGGCAGCCCGCGGTTCCCGCCGGAATTTGCAGAGTCCGTTACAGGCATTCTCCTCCAATGCCGGAACTCTTGAGAAT GCGGTTGGTGGCAGTGGGGTCCACCGGCGGCGGCGGCGGCGCGTGGGGGAGTAAGAAGAAGTTGGGGCTCTGCTCCTATG CGGTGGGGGATCGGAGGGTTGACGAGGATGGCGGGAATGATGACACAGCGGAGAGAAGTGTGAATCGTGCGGTGGAGGTG GCGGTGGCTGCCGCCGTGACGGTGGTGATGGGCGTCGGAAACAGAGTTCTGTATAAGCTGGCTTTGGTTCCGATGAAACA ATACCCTTTCTTCCTCGCACAGCTTGCCACTTTCGGGTACTTTACTTAATTTTATTTCAAACCTTTTTTTTTACATTAAA ATAATTTCATTATGTAATGTTTACATAGGATATACAAATGTGTTAGTGTTAAACAAGTCTTTTTTTCTTTTTAAAGAGTT AAACAAGTTATTTCTAACATGAGTTTGAATAACAAAATATATTTGTTAGGAGAAATATGCTATTTTCTTCCAAACGGTGG TTAATATTGGTAAAAGACTAAAAAAGGTTGATACACGTAATTTTTTTTTACATCTAATTAATTTTCATCACATCAAAAAT TTATTTTTATAGCGAATATTTAGTAGTTGTGAATAGTTGATACAAGCAATTTTTTTTATATCCAAATAATTTTTGTCACA TCAAAAATTTATTTTTATAGCGAATATTTAGTAGTTGTGTCCTTTTTTTATCATATTATTGAGATAAATTTGTACAACCC TAAAGCGTAAAGGGTTTACTTGTGAATATATGATGCACTATCACATATTCAATCGTATTACTTGTCAATATATGATGCAT TATGTCATGAGATAAATTTGACCTTACTAGATTTATTTATATAATGGTGCATTGATAAGATTTTATTTGAATTTATCTTA AATAGTTATGACTTATTTAAAAAATTTTAATATTTATATTCACTTTTTTATACTAACTTGTGAATAAAAGTTTATACTTA TAAGTTATTTTAGAGAGAGTTTGTTTCAAGGTCTGCGATGCTATGACATTCCCATGATTAACATTTCAAGAAATGTATTA CTTTGAATGTTATTCTCGGGTAGATTTTATAATTACGTTTTTTAAATTTTAAATATTTTTCGGTGAATATTGTTAAATTT TATTTAATTTAAAAAATAAAAAAAGGAAAATATATAATAGAATGTGGTGAAAGTGGATAGTTATGTTTTAAAAAATTCTT TTCTTATAAGATTCACGACCTATTTGATGGGAATGAAATGATAGGGAAGTTGGGGGTTATTTCATTCCTGAGAATAATTG TTACTCGGGAATCTGAATTTTTAACCTTGTAACATACGTGAGAATATTCATTCCCAACCTCAATATATAGTTTTGGTTGA CATTCTCATAAGTCACATAAGATAATGTTAGATAAATATACAGATTTGGTTGACATTAAATAGACATATGCATTAGCTAT GGTTTTTAAGCTCGGCAAAAATTGGTGGCAACCGCTAATATGTATGTCTATTGAATGTTAGCCCAAAATCGGATGTCTAC CTATCACCTATCAGTACTCTATCTTAAATTAGTCATATATAAAAAAAAATGTAAATATGCATGGGGTGGTTGATTGTAAT TGGAAACAAATTCAACTGTTATTACATTTTTGTTTGTTTCAGATATGTAATTGTGTACTTTGCCATTATGTATATCCGGC ACCATGAGGGTATTGTTACTAATGAGATGTTACATGTGCCTAAGACTCCATTTATAGTTCTTGGTCTGTTGCAGGCTCTT GCTGCTGCTGCTGGAAAGGCATCAGGAGGTAATTCTGCATACTTTCTATCCATTCTTCTATCCATGAGTCATCAAATTCA CTTGTCTATTGATTTCACCCGTTCGGATACAAACGAAATGGCACTTATTGGAGCTTATTCAGTACATTTTCTAGTGGATT AGTTTCAATAAGCTCTAATAAATCCGTACCCGAACACCTCATAATTTAGTGTGTATTTGAAAACTTTGTAGGTTTCCAAA CCTTTGAGCAAAAAATGATCTTAAAATAAATTTAAATGAGTAGCTTTTGTAAGGGTAGAAATGATTCCTAGAGAATTAGA AGCTGATGCAAATACGTTGTGACACTCATACTCAGGATGCAGATCCAGAAGTTAAAATAGAAGTGATTCTGAATTTCATT TGATATATTTTTGTCTCTTTCTTGTATCAGCAATTCTCTCTGGTGCATCAATTCCAATTTTGTCTCAGGTAAAATGAATT AATCACCAGCAAATTGCTTTTTGTCATTCATCTTTAACTGTTGTGCATCTGACATGATTGATCTAGAAGATGACAACATT TAATTTAAGTCTTCTAAAATGAAGTAATGCTTCTTACTGTAATGGACTATTAAATTACATGGTCTTTTTAACTACATGGA ATGAGTTTAAGAATTATTTTCAGACTTTTGACATGAAAGTGAGAACTGAAAATCTCCTAAATAGTGATATCAAATTGGTG CAGGTGCATTAAAATAGAAGTTGAAATTATCAATCAGAATTTTTTTATTACAATCATGATTAGATATCTTAATACATCAT GATAGTCGGTTAATTTTAGATTATCAAACATTACATTAGTTAAGTTCTGATGTAAGCTCAATTGATCTATTGCAAAGGGA ATTGAGAGTTAAAGCTAAGTTTATGTATGGCTTTGTTCAATATTCACAACTTTTGACATGATCTTAAAAATCAACCATTG ATGTTTCTAGTTCCCAAAGAAGCATTGCCCTTGGATATGTTTAAAGTTGTATAATTAACTTAATCTCTTGCAGACTTTTC TAGTGTGGCAAATTCTCCTGTCAATTATTTTTCTTGGGAGAAGATACAAAGTCAACCAACTACTTGGATGTCTTCTTGTA ACCATTGGTGTCATTGTTAATGTAGCAAGGTCAGTAGTTTAGTTTTCTTTAACGATTTGAGAACATGATGATGGTTGGGT TTATATATAAGTATTTGCAATGACAATGCACTCTTGAACAATGAGAAAACAGACTACAAAATTTTCTGCTAGGAAGTGTT GTAAAACTTTTGAATCTTTTTTTTGTATCATCATGTATAAATATATGTTTCTAAGGCCTTATTTATGATTTATGCCTGTT TATTATTACAGTGGAGCCGGTGCAGGAAATTCATTAATGGAAGGTGGTATGTTTTGGAGTCTTTTGATGATAGTTTCATT TTTACTCCAAGCAGCTGATACCGTGTTGAAGGTTATTGTGCTTCATAATGTGTTTTCATTTTTCTATCTTTCAAATTATT TCACTGTGGTTAAACTAGCATTTTCATAATTTGCAGGAACAAATATTTTTGGATGCTAACAGAAAGTTGAAGGTCAGTAC AATGGTGAATTGTTTTTAACTTTTGACTAATGTCCCCTCGTGGCCTTCAAATGCCATAAGCATTGCATCGGTCATTTGGC AACTTGAATTAGGCCTCGCATGGAAGTGATTATTTGAGAGAGCTTATGTAAATATAGCTTATTATCCTATTTAAATAAGC GCTTATTGAAATATACACATTGAAATAAACACTTACTTCCACTGGCAATTATTTTTTTAAGCACTTATTTCACTAATGAC AATAGTTAAATATGTTTTCATTAAGTGTTTATGCGATAAACACTTATTGCTATAAGGGCTTAACTAAGATGTTTACCTAA ATGCAACCTTAATCTATACCAGTTTTTGCTAAATTCACAAGCACACTTGCGTCAAACTTGATACAAGTTGGCATCCCTGG TCGACGTGGTTATTGTCTTGTTACAAAACCATGATGGATTGGGATCGAAAACTAACAAGGGAAAGAGGAGCAGGAACTTG AAACAAAAAAATAATATTACTAAACTTTCACTTTGGTGATACATGATGGACTCTTTCAGATGCATTTTTGTAAATTAGTT CTACTTTAAGATTGTCATTTGTTTCCATGAGATTGAATATGCCCATCAATATTATCTGAAACAGGGAGGTTCTTTGGACC TGTTTGTTGTCAATTCATATGGATCTGCATTCCAAGTAGGTATCCTACAGCTTTTTATGAAATTTCCATCTCTTTTTTAT TACAATAAAAAGTTTGACATGTAAATACAAATAAAATCCTGAATGCAAGAAATTATGCTTAGTGTAGGCACTATTTATAT GCCTTCTTTTCCCCTTCTTGTCAAAATTATGGGGCATCCCCTTCAGTCAACTGCCAAACTACCTTAAAGATGGTGCAGCC TGCTTCATAAACATTGGTACATTATCAAATGGTAAGCTGTATTTTCTTTCCATATTGTGATATCTTCTAGGGGCAGATAG AATGCCAAACTTAAGAAGTGAGAAGTCACAATTAATATATATAAGTAAATTTTCTTTTGTTATTTTTGTGATGAATAAAA AGGTTTTCTGCTTCCAGGATGTGTTGGTGCCCCTCTGCTGCCATTGCTGTTCATTATTGTAAACATAGGTTACAATATTG CATTACTTCATCTCCTCAAGATCTCTTCAGCTGTTGTATCTTGTCTTGCTTCTACATTTTCAGGTATGCATATATAAATA GGGATTGGGATCAATCGTGCCCAAATGATGTTTCATTTCCTGTCCTAACTAATGGTATTGTGACATGTCAATTAAAAAAC ACATGAATATGACATTTATAACCTTACATGAGTAGTTTTTAATTGACATAACATAATTTTATTGGTGGGACAGAAAATGA GACATCATTTGGGGACAAATGATCTTGATAAATAACAAATGTACGCATATGTGTGAAATTATGACTTATGAGGTATATCC AATTGATGAATTTTTTTCTTTTGTGGCAGTCCCAATATCCATCTATGTGTTCACTTTGCCATTGCCATACCTTGGTGTTG CTTCCTCCCTTCCTAAGGGTTTTCTGGCAGGGGCCATCATTCTCATTATTGGCTTATTAATTTATGCTTGGGCCCCTTCA AATGGTTCCTTGGGTGCTTCTAGAGAAGCCAGGATGAGTTAAAATGAGTTGACATTTCATTGGAGAGGATATAACACTTC AAGTATCAAATTCAAGTCCACCCTAATGTGAAGACTATAAGGAGAAAGGAAGAGATGTTGTATATAATTTGTTTGTTCAA TGAATTGCTAGTAAGCATTCTTGATGAGTGGTCAAGTGATCGAAAGAATAGGATATCATAGAAAGTCCCAAGTTCAATTT TCGTGTAGCTTAGAAAAAATAAATGGAGAATGATGAATGTAAGACTCATCCCAATCATGTCCTTATTCAAGAAGAATAAT ATATGAGACATACAAAGAAGCTACGTACATCGATAATGATGAATGGAACACCTTTACAATATTCATGTGGCAAGGCTTCC ATTCTTTATAATGGAAAGATCTCCTCACATTTTGTTTTTTCAATATCACATTAGTTTTTCTCTCTAGCTTAATTATTTCA ACTTCCCATTGATTTATTTTGAACAAAAAGTGACTAATTGA
CDS sequence (LotjaGi1g1v0051100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTATTTTTCCGGCAATTATCCGGCGGCGGCGCCACCACATCGTGCGGCCATGTTCAACTCCGGCAGCCCGCGGT TCCCGCCGGAATTTGCAGAGTCCGTTACAGGCATTCTCCTCCAATGCCGGAACTCTTGAGAATGCGGTTGGTGGCAGTGG GGTCCACCGGCGGCGGCGGCGGCGCGTGGGGGAGTAAGAAGAAGTTGGGGCTCTGCTCCTATGCGGTGGGGGATCGGAGG GTTGACGAGGATGGCGGGAATGATGACACAGCGGAGAGAAGTGTGAATCGTGCGGTGGAGGTGGCGGTGGCTGCCGCCGT GACGGTGGTGATGGGCGTCGGAAACAGAGTTCTGTATAAGCTGGCTTTGGTTCCGATGAAACAATACCCTTTCTTCCTCG CACAGCTTGCCACTTTCGGATATGTAATTGTGTACTTTGCCATTATGTATATCCGGCACCATGAGGGTATTGTTACTAAT GAGATGTTACATGTGCCTAAGACTCCATTTATAGTTCTTGGTCTGTTGCAGGCTCTTGCTGCTGCTGCTGGAAAGGCATC AGGAGCAATTCTCTCTGGTGCATCAATTCCAATTTTGTCTCAGACTTTTCTAGTGTGGCAAATTCTCCTGTCAATTATTT TTCTTGGGAGAAGATACAAAGTCAACCAACTACTTGGATGTCTTCTTGTAACCATTGGTGTCATTGTTAATGTAGCAAGT GGAGCCGGTGCAGGAAATTCATTAATGGAAGGTGGTATGTTTTGGAGTCTTTTGATGATAGTTTCATTTTTACTCCAAGC AGCTGATACCGTGTTGAAGGAACAAATATTTTTGGATGCTAACAGAAAGTTGAAGGGAGGTTCTTTGGACCTGTTTGTTG TCAATTCATATGGATCTGCATTCCAAGCACTATTTATATGCCTTCTTTTCCCCTTCTTGTCAAAATTATGGGGCATCCCC TTCAGTCAACTGCCAAACTACCTTAAAGATGGTGCAGCCTGCTTCATAAACATTGGTACATTATCAAATGGATGTGTTGG TGCCCCTCTGCTGCCATTGCTGTTCATTATTGTAAACATAGGTTACAATATTGCATTACTTCATCTCCTCAAGATCTCTT CAGCTGTTGTATCTTGTCTTGCTTCTACATTTTCAGTCCCAATATCCATCTATGTGTTCACTTTGCCATTGCCATACCTT GGTGTTGCTTCCTCCCTTCCTAAGGGTTTTCTGGCAGGGGCCATCATTCTCATTATTGGCTTATTAATTTATGCTTGGGC CCCTTCAAATGGTTCCTTGGGTGCTTCTAGAGAAGCCAGGATGAGTTAA
Protein sequence (LotjaGi1g1v0051100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALFFRQLSGGGATTSCGHVQLRQPAVPAGICRVRYRHSPPMPELLRMRLVAVGSTGGGGGAWGSKKKLGLCSYAVGDRR VDEDGGNDDTAERSVNRAVEVAVAAAVTVVMGVGNRVLYKLALVPMKQYPFFLAQLATFGYVIVYFAIMYIRHHEGIVTN EMLHVPKTPFIVLGLLQALAAAAGKASGAILSGASIPILSQTFLVWQILLSIIFLGRRYKVNQLLGCLLVTIGVIVNVAS GAGAGNSLMEGGMFWSLLMIVSFLLQAADTVLKEQIFLDANRKLKGGSLDLFVVNSYGSAFQALFICLLFPFLSKLWGIP FSQLPNYLKDGAACFINIGTLSNGCVGAPLLPLLFIIVNIGYNIALLHLLKISSAVVSCLASTFSVPISIYVFTLPLPYL GVASSLPKGFLAGAIILIIGLLIYAWAPSNGSLGASREARMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 17 | 17 | 5.0 | – | |
| Phobius | 1 | 100 | 100 | - | – | |
| PANTHER | 16 | 436 | 421 | 3.5E-227 | – | |
| PANTHER | 16 | 436 | 421 | 3.5E-227 | – | |
| Phobius | 101 | 119 | 19 | - | – | |
| Pfam | 103 | 424 | 322 | 2.0E-45 | ||
| Phobius | 120 | 130 | 11 | - | – | |
| TMHMM | 129 | 151 | 23 | - | – | |
| Phobius | 131 | 151 | 21 | - | – | |
| Phobius | 152 | 170 | 19 | - | – | |
| TMHMM | 163 | 184 | 22 | - | – | |
| Phobius | 171 | 192 | 22 | - | – | |
| Phobius | 193 | 197 | 5 | - | – | |
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 198 | 216 | 19 | - | – | |
| Phobius | 217 | 222 | 6 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 223 | 242 | 20 | - | – | |
| Phobius | 243 | 253 | 11 | - | – | |
| TMHMM | 253 | 272 | 20 | - | – | |
| Phobius | 254 | 272 | 19 | - | – | |
| Phobius | 273 | 291 | 19 | - | – | |
| TMHMM | 291 | 313 | 23 | - | – | |
| Phobius | 292 | 313 | 22 | - | – | |
| Phobius | 314 | 349 | 36 | - | – | |
| TMHMM | 345 | 367 | 23 | - | – | |
| Phobius | 350 | 370 | 21 | - | – | |
| Phobius | 371 | 376 | 6 | - | – | |
| TMHMM | 374 | 396 | 23 | - | – | |
| Phobius | 377 | 397 | 21 | - | – | |
| Phobius | 398 | 408 | 11 | - | – | |
| Phobius | 409 | 427 | 19 | - | – | |
| TMHMM | 411 | 433 | 23 | - | – | |
| Phobius | 428 | 442 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0051100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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