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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0051900 |
| Transcript ID | LotjaGi1g1v0051900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein AATF; TAIR: AT5G61330.1 rRNA processing protein-like protein; Swiss-Prot: sp|Q5ZIM6|AATF_CHICK Protein AATF; TrEMBL-Plants: tr|I1N489|I1N489_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0051900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7333838..7339810) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAACCACCAAACTAGAAGTACCAATTTGCGAAACCTAAACAACACAGGAACCCGCGTCTCACTCTGCTCTGAGTTGC CCCTGCTCGCGCCTCCGTCCACTACCGCCGTCCAAACCACCGCTTCCTCCGCCCGTCTTCGCCGTCCGTCCAGTCCGCAG CCGTCGAACCTCTTCCAGATTCTTCTCTCACTGTAGATTGAGACTTCCGAGTTTCAAACACACTCTAACTCGGGTGAGTT GAACTCAGTTTATCATCTTCTAGCTCACCTTTAAACTGAAACGAGTCGGTGAGCTCAACCCGTAGAGGGTTCAGAGCTTT TTCACCACTTCGTGACCACTCTAGAATAGGGTTTTATTGCCTGCTTTTTGCTGCAGTTATTGTTGAGTATTGATTCACTG TTTATTTATATGCATTATTAGGGTTTCACATGAAGAATTGTCCTGTTTTTTCTTCATTGTCTGCCCCTTTGATTTGATAA TAGTCTATTGATTGCAATTTTTTTTTAATATATATGTAATATGCAATGTGATTTGTAATTCATTTGTTTTAAATTTAGGT GAAAAATGGGATTATCTGCGAAGAAATCGAAGAAAATGAGAAAAAGTGACAGTGATTCGGATGAATACAATGATATGGAC TACAATGAGGTAACTGTTGATGCAAAGTATTGATGTTGTTGTGTTTTTTTTTTATGAATTGTGATTAAGGAGTATTTTTT TCTGATGTAGGTGGAAGATGATTATGATGATGATGTTGAAGAGGAAGAGGAGGAGGTAGATGGAGAGGGGGGGACAGATG AGGAAGAAGATGGGACGGACGAGCCAAGTAAATGGAAAAATGATGATGATGAGATGGAACAGCTTGAGAAAGAGTACCGG GATCTTCATCACCAGGAGCTGTAAGATTTCTTTAATCATTTGATATACATTTAGTGCATATTGGCGATGGAAAATTACTT TATGTTGCTAGATTCAAGGTTTTAGTGAACCTATTATATACTATTTCTCTTTCTTAATCTATAAGATTGTGCTGATTATG AAATTTAAGAAATTTAACTTTCTAACCTCAGAGATACTTTGAAGAACTTGAAGCATCATAAGGATGAAGATTTCCTTAAA GGTCAAGCTGTGAAAAACCAGAAGGTGTGCTTTCTGTTTCAGTGGTATTCAGTATTTTGTTCAGTATCTTTTGCCACTTA CTCAGTCTTGATTCCTCATTGTTTAATATTATAGTAGGTTGAAATATGTTTATTAGCTAGTTTCTAAATCTTAATTCGGA CATAGATGTTGTCAATTGTAGCTGTCACCTTTGCTTTAGTATATACTATTAATAATTAGTGGTTTCTGTTATGAGTTTGT AATAACATCACCTAATTTTTTTTATCTGAACTCTGAAGGCCCTCTGGTACAAAATTCTTGAGCTTAGGTTTTTGCTTCAG AAGCCATTCACAAGTTCAAATAGGTTACCCCAGGTTTTTTCCTACCCTTGTTTTAAATTTAACTTGATTTGCTATTTTAT CATACCTGAATGTTATGGCCAAACATGGTAAATTGGGCAGGAATCGATCAAGACTTCATTCTGCGAAGCAGATGAGACAG TGGGAGTTGCCTATTCAGATCTGATGACTTCTACCAAGGAGACATTAGATTCTATTGTGGAACTACAAGAGGTGCATTTT TTTCCTCGGAATTTAAATAAAAAAGAAAAGAAGTTGTTGTTGGATGATGCTGTTTCATTTCTATATTTGTCAAAATCTCA TCATATGCAATATTGTTATATTTCCGTTACGTCTTATTTCGTTAGTTACTGACTTATATGTGTTTGTGTGAGGGTGTGTG TGTGTGTGTAATTCATTGCGGGTCACTGATACTTTTCCTTGTTCCAGGCTCTGTTTGCAAACAATCCATCAATTACTCAA GCCACAGATGGTAAATGGTTTCTTTAATGTTCTCATCTCCCATTTCAGTTTCTTCTGGATTTATCTGACTTGTGATCATT TTGTGCTCCATTGACCCCTTTCATACTTTGATGCTTGTGGCATATCTTTGAGGGTTAAAAAAACAACATTCCCTGTAAGA AATGGCAATACTAGCAATATAGTTGCTTTAGGAATATGGATTTTGTTATACTTACATGGACCGTGCTTGGCTTGTATATT AGTAATTTAGTATTATGTAGTTGATGAAGCATACGGCAACTTATCTTTTTGGAAGACTTTCATGAGATGTCACCAAGATT TTGGTTGTTATATATATATATATATTAACCAGCTTTGCTATTGAAATAAGGCGGTCACGTCTGTTAAGCAAGGAATGGAC ATCTAGCTAAGGTTTTTTGTTGGTTATTAGAGACATATTCTTTAAATGACTTTTTTAGTTAAAGTGAACACTTTTGTTAA GCAAGGAATTGACAGTTAGAATGGTTTCGAGAATTGAGCGAAGGAAAAGTTGGGAGTGTGTGACATAAATCTGTCAGAAA TTGAAAATCGTAAAGTTTTGTCTGGGATGGAGAAATATATGGCTAGAAGAGTTATCTGTCTATCTGGTTAATCAATAACA TGGACATCTTTACTATTGTAGAAAGAGGAGTCCTCCGTTTTGTGTATTGTTTTCCTTTAATGGCCCAAATATTTTGTTAC TATGATTTAGAGCAGAGAGAGAAATGTCAAATAAAAAAGAAGAGTCTGCTCATTACTGTGTTAGAATTATAATATGAAAT CATTCATGTGTCTTCATGTAGTCATTTTCATAAGTCATTTTTCACTCAGTTCTTTTCTTTTTATGTTGATCGTTTCTAAA CCTAACAATGAAATCGTGTTTTTGTGCCTTATGTGTAATCAAATAAGATTATGTTTGATCTACATATCCGTGTTGTTGAC ACCTATTGTAGTATATTTTCTGGGATTGAGGTGAGGACTTATATAGTAATTGTCTAGGGAGTGGAGGACTGACAAAGTGT GTTCCTTGTGTAGGCCTTTAGTTAATTCTAGGTCAAACCATGATAAATTCTGGGTCTATTTTATTCTCCCTATTTCCTGG TGTTGCACCTGGTCACAACACTTTCCATACTCACTTTTGCTCTCTCTAAGACACAATTAGACAACCGAATCAAATGCATT GATTATGTCGTAAACAACAATTTTCTGTGACTTCCAATATCTGTTGTGTATTTGCTTTAGTAGTGTTCCAATTTCCAAAG TAACAAAATTTTCCCTCTTGTTAAAGGTTCAGAAAGGACATCAAAAGATTTAGAAGTTTCTAAGCATTTGGATGACAATC TTGACCAAGAGTGGTCACAGATTTCTCAGAGACACAAGAGGTACGTTTATAAATCTTCCAAGTGCACAAATGTTCTTTTA GGTACTGATTTTCTTAAGGTGCTGCAGCATTGAGACTACTTATGTTCTTCATCTAAATTTATTTCTAAAACATGTGCTCA TCATCCTTATGTGGGTCGGCTTGACTGATTCTATTCGTGATTGTATCTTTCAGTATGGCATCTTTCAGAGATAAGTCAAT CAACAAATGGCAGAGGATGACACAAGTGACAACTGGTGCTGCCGCCATTAAAGGAAAATTACATGCTTTTAATCAGGTGA GGTTCTATAACTGAACTGGGGATTCTACTATATGATAGTCGGTTATTTTTAATCTTATTTTGTTCTACTGTCATAGGATA TCAGTCATCAAGTCGCTGCTTATATGAGGGATCCCAGTAGAATGACCAAGCAAATGCAACTGAGAAGATCAGCTGTTGGT ATATTTGGATCTGTAAGTCTCTTAATCTTAGTTGTTTTAGAAATATGTTGCAGAGTGCATATTAGGCTGAAACAGGCATA AAGGTCTGTTAAGTAAGAACCTGATTTGTTCACCTTAGTAATTGACATTTACCGGCATATGTCTCCAGGTTCCAGAGGTT AATGATAGCTCTAAAGAAGTGGTAAGTCTTGTACATTGCTAATTTTTAGTGTTGCTTTGATATTACTTATGCTCGGGATC AGCTAGTAATATCTTTTTGAGGGATGTAGAATTTTGTTGCCAAATCCTAGCTCCGTTACGTGGTTCCTTTACACTGTAAC CTGTCTGTCTGTCTTTCCCTCCCTCCCCCACTGACCTTTTTTCCTTGCATTATGTCTATCTTTCTCCTTCGCTTTCAACC TTGGTTCATCCTTATCAAGCCATATGGGATTCTGCTCTTAATCACTGTTGCTGTCCAAATTTGAATAGCTGTCCATTAAT TTGCCAAAGATCATCATTTACCTTTTTTTAAAACAAAGCATGTTCAAGTTGTTTGGTATCTATTGTTAGTTTGATTGGAT CAGATGTATCTAGTTGTATAATGAAAGCTAGGAAGAGGATGAAGGGTTTCAAACATGCTAAGGAGTGCGTCTAAATATGT TAGTGTTTTGTTGGTGATATGGTGGTTTGATCTTCTGATTATTAGTCTCCACTAAGGGACATGTTTTTGTCTTATAAAAT TGCTATGTTGTCATATTGTCATGTTGTCTATCTGTCTTTACACTGCTTCTCTTTTTACCTTTTTTTTCACTTTGAGTTTC AAGATGATTTAGTTCTAAATTTAACTTGCTCAGGAAACACATGCTGACGCTGATCCTGAACTTCTGGACGACTCTGAATT TTATCAGCAATTATTGAAAGAATTTTTGGAGACAGTTGATCCTTCATCATCTGGTACACTTCTTTTTTACTGATTGATGT TTTTATACTTTTAATACCATTGTACTAGTTAGGGCTTTTATTCTTCATGAGTCTCATGACCTTGAAATGGATCCATATGC TATACAGTTATATTGATACATATTAAGTGTTTTGGCATTTAGGAGTGATTGGTATAGTCTTATGTTGTATACGGGCTTCC AAGGGTAACCACCTGTCACATGTACAAATAACTGAATATGAGTTTAACTGGACTCAAATAATGACTATTTTGTCATTAAA TTTCTTTTTGGTTACGCTTGCATGGTTGGACCCTAGGTAAAGCACCTAGCATTTCGCTTAGGTGCATGAAATGTGAATGA TTGCCTAAGGTTTGCTGCTTCTGAAAACCGAGCTATTATCCCACCAAGCTTTTGTGAATTGTGAGAATCATAAATCAAAC TTGGATATATATTTTGAAAATTTTGGAATGTTTTAGACAAGAAAGGGATGTAGAATTTTCTAGTAGTTGTTTTGTATTAG CATCCCCCTAACAACCTGTTCAAAATTTTCCCATAATGTAGTTGTTAGTTACCTCTTCAATAATAAGATTTAACTGTGTT ACTTAAGAATGGAAGTCCAATTTCTTATTTTCTGCTACTGTCATTTGTACAGAGAAAGCATTTTATGCTTTGAAGAGAAT GCAACCAAAGAAAAGAAAAATTGTTGACCGTCGCGCCTCAAAAAGTCGCAAGATAAGGTATTGAAAGATTGCTACTAATT TTCTTTTTCTACTACAGTCATATGTATCTTGCAATTTTATGAACTGAAATAAGTTTTTGAATGATTTGATGTTGAAGGTA TAATGTCCATGAAAAGATAGTAAATTTTATGGCTCCTCAACCAGTGAATCTACCTGATATGGCTCCAATGTTATTTGAGG ATCTGTTTGGATTGAAGACTCAGCGTTCATCTGCTGCAGCCTCATAATCTTGGTTGTTGGACTGAAATGTTGGCCTCAAA ATTTTGCCCTATTTCATACCATAGTATATATTGTACTGATTTATCTCCTACATAATGTTGATTACTAAAGATTTTTATTT TTCTCCTCTCAAGCCAATTTTGCTGTGAATCTATTCAGGAACGTAGTGCCCCTTAAGACACTAGCATACTATTATTTTAA GGATAACATTTGGATCATGTATGTTGTATTTTTTTTACGATAAAGTTCTTAATTGAAACAATACTATGTGGTTTTTTAAC ATCAAGAATATATTTGTTGAATTTTGAAAGAATGGTCACATGATTGAGCCCCG
CDS sequence (LotjaGi1g1v0051900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTATCTGCGAAGAAATCGAAGAAAATGAGAAAAAGTGACAGTGATTCGGATGAATACAATGATATGGACTACAA TGAGGTGGAAGATGATTATGATGATGATGTTGAAGAGGAAGAGGAGGAGGTAGATGGAGAGGGGGGGACAGATGAGGAAG AAGATGGGACGGACGAGCCAAGTAAATGGAAAAATGATGATGATGAGATGGAACAGCTTGAGAAAGAGTACCGGGATCTT CATCACCAGGAGCTAGATACTTTGAAGAACTTGAAGCATCATAAGGATGAAGATTTCCTTAAAGGTCAAGCTGTGAAAAA CCAGAAGGCCCTCTGGTACAAAATTCTTGAGCTTAGGTTTTTGCTTCAGAAGCCATTCACAAGTTCAAATAGGTTACCCC AGGAATCGATCAAGACTTCATTCTGCGAAGCAGATGAGACAGTGGGAGTTGCCTATTCAGATCTGATGACTTCTACCAAG GAGACATTAGATTCTATTGTGGAACTACAAGAGGCTCTGTTTGCAAACAATCCATCAATTACTCAAGCCACAGATGGTTC AGAAAGGACATCAAAAGATTTAGAAGTTTCTAAGCATTTGGATGACAATCTTGACCAAGAGTGGTCACAGATTTCTCAGA GACACAAGAGTATGGCATCTTTCAGAGATAAGTCAATCAACAAATGGCAGAGGATGACACAAGTGACAACTGGTGCTGCC GCCATTAAAGGAAAATTACATGCTTTTAATCAGGATATCAGTCATCAAGTCGCTGCTTATATGAGGGATCCCAGTAGAAT GACCAAGCAAATGCAACTGAGAAGATCAGCTGTTGGTATATTTGGATCTGTTCCAGAGGTTAATGATAGCTCTAAAGAAG TGGAAACACATGCTGACGCTGATCCTGAACTTCTGGACGACTCTGAATTTTATCAGCAATTATTGAAAGAATTTTTGGAG ACAGTTGATCCTTCATCATCTGAGAAAGCATTTTATGCTTTGAAGAGAATGCAACCAAAGAAAAGAAAAATTGTTGACCG TCGCGCCTCAAAAAGTCGCAAGATAAGGTATAATGTCCATGAAAAGATAGTAAATTTTATGGCTCCTCAACCAGTGAATC TACCTGATATGGCTCCAATGTTATTTGAGGATCTGTTTGGATTGAAGACTCAGCGTTCATCTGCTGCAGCCTCATAA
Protein sequence (LotjaGi1g1v0051900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLSAKKSKKMRKSDSDSDEYNDMDYNEVEDDYDDDVEEEEEEVDGEGGTDEEEDGTDEPSKWKNDDDEMEQLEKEYRDL HHQELDTLKNLKHHKDEDFLKGQAVKNQKALWYKILELRFLLQKPFTSSNRLPQESIKTSFCEADETVGVAYSDLMTSTK ETLDSIVELQEALFANNPSITQATDGSERTSKDLEVSKHLDDNLDQEWSQISQRHKSMASFRDKSINKWQRMTQVTTGAA AIKGKLHAFNQDISHQVAAYMRDPSRMTKQMQLRRSAVGIFGSVPEVNDSSKEVETHADADPELLDDSEFYQQLLKEFLE TVDPSSSEKAFYALKRMQPKKRKIVDRRASKSRKIRYNVHEKIVNFMAPQPVNLPDMAPMLFEDLFGLKTQRSSAAAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 68 | 68 | - | – | |
| PANTHER | 7 | 390 | 384 | 5.1E-121 | ||
| MobiDBLite | 21 | 56 | 36 | - | – | |
| Coils | 63 | 83 | 21 | - | – | |
| Pfam | 98 | 230 | 133 | 2.2E-30 | ||
| Pfam | 311 | 386 | 76 | 1.0E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi1g1v0051900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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