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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0052300 |
| Transcript ID | LotjaGi1g1v0052300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G32560.1 F-box family protein; Swiss-Prot: sp|Q8RY82|FB121_ARATH F-box protein At2g32560; TrEMBL-Plants: tr|I1JIV7|I1JIV7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0052300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7368784..7372212) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTACTTTACTTCATAACTTGTGTCTCTTTCTTTCTGTTTTTAAAGCCTCTCATCCTTCTCAAACCACTCCCATCATG GACTAGTGAGGTGAGATTTATCTCTCTTTTGTTTCACAAAGAGCTTTTGTCTGTGAAATCCATCACTAGTTTGTTTAGGA ACCGCCTTTGGCTTGGTTTTCTTTGTCAAATTCCTTCAAGAATGTCTCTTGTGAAGAAGACTCACACTTCAAAGGTGGAG AATGTTGAGGACACACAAGAGATGTCAGTGTTGGACTTGCCAGATTTAGTGTTGGAAACCATACTTGAGAAGCTCCCTCC ATCTTCACTTTGTCAAATGGCTGGTGTTTGCCGTTCATTGAGGGAGAGATGTGTGAGTAATCACCTATGGGAGAGGCACA TGAAACAGAAATGGGGAAGAGTTGTAGGTTCAGTTGCTTACAGGGAGTGGAAATGGCATGTTGCTTCCAAAAGGAATGTT GGCAGTGTTAGACATGGCAAGCAAAGGAGCTTGATGAGGCTCGTGCCGCTTCGTTGGCCTTTTTCATGGATGAGAATGAA GGTGGAAACAAGTTATAGCAGCAAGCAGAGGAGTTATGTGCCTCCTGATTCATTCATGACTTGGTATCTTGCTCTTGAGA GTGGCAGCTTCGCGTTTCCTGCACAGGTCTATAACCGCGAGGTATCTGTGATGAACCCCCCTTGTGCTTTTTCTATTGAA AACTTTTACCGTATCATGCTACCCTTAATTGTAAAATAAGTTATAGCACTTTTGGGTAAACTTATTTCTTCTCAGAATCA ATTCTAGCATATAGAAGCTACTCATAGAAGCTTCTCCCCGGAATTGATTTTGGCTTAGAATCAATTGTAGAAGAATTTTG ATAAGTAAAAGATTGTTTTTCTCACAAGTTACATTTATTTCTGCAGAACGGCCATGTTGGATTTATGTTATCATGCTATG ATGCTGAGCTTAGCTATGATCCAAGCACTGACACCTTCCAAGCCAGGTAATTGGACATGATTTTTGTGGTGATCATATCT TTAATATAATTATGTTCCCATTTATCATAGACTTTTTTATCTTGTGGCCTAATTATTGATTATTTGTCTATTATAGGTAT CCACCACATGGAAGAAGGGCAGCTACAGTAGAGCATGGTGTCCCATGGGAAAGGCTAAGGGCACCACCTGTTGATACTCC TCCACATGATCTTCATATCTCTGACTGTCTATGTGATTTGCATCCGGGTGATCATGTAGAGATTCAGTGGAGGAGAAACA AAGAATTTCCTTATGGTTTGTTCCTTTATTCAACATGTTCTTATAATTTTAATAATTGTATTGGTTGTTTGGACACATTT TGGCATTTTTGGGACATAAGATTTCCATCTGACAAAGTGAACCGTTTTTGAGTCTTCAATGAAAATGATTACTTATCCAA TTTTTGATTATGCATTTCCATTTACATGTATGATTTACTCTTCTTGTGATAATATCCTAAATTGGAGCTTGATAAAGTGC CCCTTTATGGCAGGTTGGTGGTATGGTATTGTAGGACACTTGGAGTCATGCGATGGGAATGAAAATTACTGCCATTGTCA TAATAGTGGTGAGTTAATTCATTTTCCTTTTAAATGAATGCATTTATCATTTATTAGCTTATCTTGGCTGTAGTTTTTGT CATTCATGTTATCCATGTTCTGTTCCTCCCTTCAATTTGAACTGTTTTTGGTAAAATCATCTAGTGGAACAATGCAAGGA TGAGATAGGATTTGGATTCCCTGCTCTTGAATTTTCGTAAATTCACTGCAGTCATGACTTTATAACCATCCGATAGATTA GATTTCAAGAGATTGATTATGCACCTGAAATTGGAAATTAAATTTGAACCGTCCAATCTTGATCAGACAGCTACGAATCT GTGACTGCAGTGAACTTAGAAAAATTCGAGCGCAGGGAAGCCGGATCTGGTATGATGTGGGGATTAGTTGAAAAGGTGAT TGTAGGATACAAATGAATTCTATTTTCTTAGATTCAAGTGAGTGTAGTGTATAAAGATGCAAAAATAGAGAGAGAAAAGA ACATCATGATCAGGGATTTTGAAGACAAGGGAATTGAGTGTAGGTTAAAGTCTATTGTTATATGGATTAAATTTTTTAGT GATGTTTCATACAATTATTGTGGAGCTTGTAAAGTGAAAAAATAATGATGTAAATGTAAAGTTCATTTTGTCCGATCAGC CTCAATTTAGGCTAGGTTCCTTTAATTGCAATAATAATATATCAAAAGATGGACCACCAACTATGCTATAAGATTGGTCC CCCAGACATATCATGGTCCATATGTCATGATTCCACCAACATTGTGATAACTCCTGTCTCAGTGGATCTGTTTATGGCCA ACTATGTTAAAGAAAAAAATCCAATTTTATTTAAAGCTTCTATTTCCCTTTTGCTATTGAATGTGGGGATACCATGTTCA TTATAAGCTTTGAAACTCTACTTCCATTTACTTGATAGTGGTTGTTAACCGCCAGAGTCATCCACAGCCTCTTGCTTAGC CTACCTTGTTTGACATTTCTTTTAACAATCCCTTCCCCACAGATAACAGTAACAACAGAAGAAGAATAATGCAAAACACT ATAATTTGGGAAAAAACTTAGATACATTTTTTATACATGCTGTTTTTACTCTTGTCCAATAAGAACATGACACACCGGTT GAAAAAGGGGAAGTTGAGGGAGGTTATTACATTAATAAAATACTAAAAATGTTGGTGACTGAGTTTTTCATCAGATAACA GCACAAACAATACATATAGTAGGTAAGTTCTGTCCTATAGTTTGTGCCTCAGTAAATAAAAACCAAGTGTGTATATCTTC CTGGCCATGAATACATAATGATTTTGCATGTTTTAGTGTTATGTTTCTAATAGGAAAGTTCTTTTGTGATAAACTCTATT CTCATGTTCCTTCACCACTCTATTTAAGCATGACACGAGTTAAGGCATAATTTGACATGTTCTTACCAATATCGTGTTTT TGCAAGTTCTTCAAGATGGTCAAACATTTTCTTCCTTTGGGATATAATGAATGAAGTTCTCAAAAATCTACCATGAAAAC TGAACTGCTAATCTTTTTGACCCATGGCATTAGCCTTTGCTATATCTCCTATCCCCAAAGGCGTTTCTTTGGAGTTAGGA TTCAAATATGGTTTATTTGACACTATAATTGCTGATTGCAGACACAGTGGTGCTAGAGTTCAATCAGTACACTCCTGATT CGCGTTGGAGGACAACGAATATCAGTAGGAAAGATCACCGGGAGGAGGGAAATGAGGCGGACGGTTTCTATGGAGGAATC AGAAAGATAAAGAGTGAGAATGAGATTTCCATTTGGAAAAAACTTTGGCCTTCTGATGTGTTGGACTAA
CDS sequence (LotjaGi1g1v0052300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTACTTTACTTCATAACTTGTGTCTCTTTCTTTCTGTTTTTAAAGCCTCTCATCCTTCTCAAACCACTCCCATCATG GACTAGTGAGGTGAGATTTATCTCTCTTTTGTTTCACAAAGAGCTTTTGTCTGTGAAATCCATCACTAGTTTGTTTAGGA ACCGCCTTTGGCTTGGTTTTCTTTGTCAAATTCCTTCAAGAATGTCTCTTGTGAAGAAGACTCACACTTCAAAGGTGGAG AATGTTGAGGACACACAAGAGATGTCAGTGTTGGACTTGCCAGATTTAGTGTTGGAAACCATACTTGAGAAGCTCCCTCC ATCTTCACTTTGTCAAATGGCTGGTGTTTGCCGTTCATTGAGGGAGAGATGTGTGAGTAATCACCTATGGGAGAGGCACA TGAAACAGAAATGGGGAAGAGTTGTAGGTTCAGTTGCTTACAGGGAGTGGAAATGGCATGTTGCTTCCAAAAGGAATGTT GGCAGTGTTAGACATGGCAAGCAAAGGAGCTTGATGAGGCTCGTGCCGCTTCGTTGGCCTTTTTCATGGATGAGAATGAA GGTGGAAACAAGTTATAGCAGCAAGCAGAGGAGTTATGTGCCTCCTGATTCATTCATGACTTGGTATCTTGCTCTTGAGA GTGGCAGCTTCGCGTTTCCTGCACAGGTCTATAACCGCGAGAACGGCCATGTTGGATTTATGTTATCATGCTATGATGCT GAGCTTAGCTATGATCCAAGCACTGACACCTTCCAAGCCAGGTATCCACCACATGGAAGAAGGGCAGCTACAGTAGAGCA TGGTGTCCCATGGGAAAGGCTAAGGGCACCACCTGTTGATACTCCTCCACATGATCTTCATATCTCTGACTGTCTATGTG ATTTGCATCCGGGTGATCATGTAGAGATTCAGTGGAGGAGAAACAAAGAATTTCCTTATGGTTGGTGGTATGGTATTGTA GGACACTTGGAGTCATGCGATGGGAATGAAAATTACTGCCATTGTCATAATAGTGACACAGTGGTGCTAGAGTTCAATCA GTACACTCCTGATTCGCGTTGGAGGACAACGAATATCAGTAGGAAAGATCACCGGGAGGAGGGAAATGAGGCGGACGGTT TCTATGGAGGAATCAGAAAGATAAAGAGTGAGAATGAGATTTCCATTTGGAAAAAACTTTGGCCTTCTGATGTGTTGGAC TAA
Protein sequence (LotjaGi1g1v0052300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLYFITCVSFFLFLKPLILLKPLPSWTSEVRFISLLFHKELLSVKSITSLFRNRLWLGFLCQIPSRMSLVKKTHTSKVE NVEDTQEMSVLDLPDLVLETILEKLPPSSLCQMAGVCRSLRERCVSNHLWERHMKQKWGRVVGSVAYREWKWHVASKRNV GSVRHGKQRSLMRLVPLRWPFSWMRMKVETSYSSKQRSYVPPDSFMTWYLALESGSFAFPAQVYNRENGHVGFMLSCYDA ELSYDPSTDTFQARYPPHGRRAATVEHGVPWERLRAPPVDTPPHDLHISDCLCDLHPGDHVEIQWRRNKEFPYGWWYGIV GHLESCDGNENYCHCHNSDTVVLEFNQYTPDSRWRTTNISRKDHREEGNEADGFYGGIRKIKSENEISIWKKLWPSDVLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 400 | 400 | 1.1E-206 | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| PANTHER | 1 | 400 | 400 | 1.1E-206 | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 21 | 8 | - | – | |
| Phobius | 22 | 400 | 379 | - | – | |
| Gene3D | 74 | 163 | 90 | 5.6E-11 | – | |
| ProSiteProfiles | 87 | 133 | 47 | 12.014 | ||
| Pfam | 88 | 133 | 46 | 1.1E-9 | ||
| SUPERFAMILY | 90 | 159 | 70 | 1.31E-13 | ||
| SMART | 93 | 133 | 41 | 3.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0052300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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