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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0055500 |
| Transcript ID | LotjaGi1g1v0055500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT2G41060.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O80678|UBA2B_ARATH UBP1-associated protein 2B; TrEMBL-Plants: tr|I1JIR8|I1JIR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0055500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7820621..7825989) extracted from Lotus japonicus Gifu genome v1.2.
ATCATTTGCATCTTCTATCTCTTCAGACAAATTCCCCTTTCTCTCTTTCCGTGCAAACCCTAACCCTAGCTTCACCGCCA TGGCCAAGAAGCGAAAGCAACCGCAACGTTCACCCGCCGTCGAACCCGCCGCCAAGCCCGTCGACGTCGAACCCCAAGAC CAAGACTCGGTGGAACTCGACCACCAACAACCCCCTAACCCTGAACCAACCACTGACCTAGACCAATCCAACAACACCAT GGCCGTCGATGAAGAACCAGAAGAACAAGATCAGGAAACCGAAGATCAGCCTCAAATCGACGACGCCGTGGAAGAGGAAC AAGACCCAGAAGCACCAGCAACAACAGAGTCTGAACCACAACAACAACAAGAAACCCTAGAAGATAACGCTGATGCTCCA AACGAATCTTCCGCTGCCGCCGCCGCCGCCGCCGCCGCTTCGGAATCGGTTGCGAATGGGAGCAACAACAACGAGGAGGA AGAAGAGGAAGAGGATCTCGAATTGGAGGAGGAACCCGTCGAGAGGCTTCTGGAGCCATTCACGAGGGAGCAGCTGCACT CTCTGGTCAAGCAAGCGGCGGAGAAGTACCCTGATTTCGTCGAGAATGTTCGCCAGCTCGCCGATGTGGACCCCGCTCAC CGGAAGATCTTTGTTCATGGCCTCGGCTGGGACACCACCGCTGAAACGCTAACCAGCGTCTTCAGCAAGTACGGTGAGAT CGAGGATTGCAAGGCGGTTACCGACAAGGTTACTGGGAAATCGAAGGGATATGCATTCATCTTGTTCAAGCATAGGGACG GTTGTCGCAGGGCTCTGAAGAATCCTCAGAAGAAGATTGGGAACCGAACGACCTCGTCTCAGTTGGCATCCGCTGGACCG GTGCCGGCAACGCCGCCGAATGCTCCTCCGGTTTCTGAGTACACCCAGAGGAAGATCTTTGTGAGCAATGTGAGCTCGGA TATTGAACCATTGAAGCTGCTTGAGTTCTTCAAGCAGTTTGGGGAGGTTGAAGATGGTCCCTTGGGGCTTGATAAGAACA CCGGGAGGCCGAAGGGGTTTGCGCTTTTTGTTTACAGGTCGGTGGAGAGTGCCAAGAAGGCTTTAGAAGAGCCAAACAAG GAATATGAAGGGCACACTCTGTATTGTCAGAAGGCTGTGGATGGTCCTAAGGGGAGCAAAGGGTATCATCAGAACCAGCA CCAGCACCAGCACCAACACCATTCTCACCATCATCAGCCTCACTATCAGCCGCATAAGAAGCACAAGTACAACTCTGGTG GTGGGCCATCACATGGTGGTGGTGGTCACCTGATGGCGCCATCGAATCCCGGCATGGGAGGTTATAACCCTGGTGTGCAG GGTCAGGGGTTGAACCCTGCTCTAGGGCAGGCTTTAGCTTTGCTTGCTAATCAAGGAGCTGGGTTGGGGCTTGGGAACCT GCTTGGAACTTTTAGTGGTGCACCAGTGAACCAGGCTGGACCACCTGCTGCTGCTCCTTATGGTAATCAGGCTCCCATGA ACTATGGGAACCAGCCAGGGATGCAACCGGGATACCAGAATCCTCAGATGGGACAGAACAGTGGTGTTAGACCTCACCCT GGTTCTGGAGCTCCCTATATGGGTCATTAGGTGAGAATGGCTAATATCTTTTGCTTTTTCTTAATTCGTATGCTGACACT GATGAACCTATGACTATGACAATTCATGTGATGTGATTTTTAAGATTATAATCTGTTGTAAGGAGTTGGGGTGGTGTAAG TGTCACTTGTCTGAAAATAATCAAGGCATGTCATCATTTAGGGCATTAATTTATACTGGATGAGTAGGTCTTAAAATCCA TGACGATAAGTGAAGGAACTAAAGTCTTTTGCTTGCATTTGATGTTATTGTGCATTCCATCTCAGAAGGTGGATGTGAAC TGTGTTAGGATGCTTTTGTGTTTTATGATAATGACTTTTTGTTTTGCAGTTATCATGGGAGTAGGGAACATTGTTTCTCG TTTGCATTGGTTTTCTTGCTTGATAGTGCTGCTACAATATGCTCAGCCATTTATTCGTTTCATCTAATTAAACTGTATGC ACATAATCTATTCCAAATTGAACAATAACTTTAATATTCTATAAAAGAAGTAAGTTTTAATTCAAGTAATTATCCATTCT CTTTCTTCTGTGTTCTATCCATTAAGCTTCTTAATCCTTATCATTTTCTGCATGAGAACATTATGAAGCTTTCATTCAAC TCTTTTAGTGTCTGTTGCATGTACCTATTTTTTTTTTTTTTTTGAGTTTCACTTCTAATACCATGCTTGGCATTGTTGTT TGAAACTATTAAAAATGTTGAAAATCTTTTTTGCAGTGCTGAAGGTATGACCTTTGTTTCATATTATAACTCTGTTTCTT CTTGCGATAACTGGTTTTTGAAATTAGTCTTTTTATAATCTATGTATTCATTGTGCAGATACCTCATAGATGCATCAATC ATTTTGTTTTGGACTCTGCCGATTCCTCTGAAGTATCAAGCACTATTCAAATGCATCTTTTAATATGTAATTTTAGTTAC TTTTTTATTACTAAAGAACCAGATTCTGAAACCTGTATTTCTTTCTGTCTTGCCATATTATCCCCTGAAATCTTTTTAAA ACTATGTAGTACCTCTTGTTCCTTTTTGGAATTTGAGGAACATGTTGAATTTTGGGGTTCAGAAAACTTTATGACTATTA TTTTGAAGTGTTTCTTTCCTGAACTTTCAATGCTCTGCTTTATCGTTATGTTTTACCTGTGTCTCTGGCATTCAGTCTAT TACCACATTTGTAGAAGTATAATGTTCTTATCCGCAAAAATAGAAATATCATAGAAAATTGGTGTATTTACATTTTTAAT GTCTCTGTACTTAGTATGCCATTTATTTCTCCGGAATTATTTTTTGCGAACTTCTTTTTATTGTATTGAACTGTTGGAGA CAACTAGCGAACTTAGTCAGATTTGAAAAACTTATCAAGTGTGAGAAAAAAGCCTCAAAGTCAAAACACTTTCATATCTT CACAAACAGAGAACATACACGTTCAATCTTTTTTCTCTATTTGGACGGTTGATATAAGCAACTTTTTTCTCAACCCTCGA TGAAGAAGTATTGAACAGTTTTTTGACTGAATCAATATTCGTCATTCTGTCATCCTTTTTTTCTCACCCTTCTCAAAGAC AAAGTTTGCCTCCCCTCAGTTTTTTTTGAGTGTTCAATAGCTTGTTTTCCAGGCTGTCTACTTGTTATCTTTGTTCTCTT ATAATAAGTGAAGTTGTTTTATCTGAGGACTGATCTAGATATTACACGTCACACCATATTTTATTTGCTTAAGGGGTTGG CTTGCCTGACACGTAAGTCCTTGCCACTTCATCATAACTTCTGAGATTTGCATTTGGAGCTTGGATCCTTCCATTCACTG CCAAGGCTAGAAGTGGCCACACTTGGTGGGTGCGTTGCTCTCACTGTGTACAAGTGTGCCCTGTGCTCTCTCACAATTGG TATGATCTTTTCTTTTGCTATTGACTGTGTGTATTGTGGTAAAGTTAAGTTCGGCAACTTGCCTTCTTTTGACTCAAGGA AGCTTTTAATTGATTTTTGAAAATGATTCTCTCAAGAGTTCAGCTTTTGAATTTCAAATTTATTGCTTTTTTACGTATAA CTTCTTGGAAAACTGCCCAATTTGATATTTTGTTTTGGCCTTGATGAAGCTAATAATACCTTGTAAAGCTCTAAGATGGC AGTTTCCTTTTTTGGTAAAATTGAACTCTAAACTAAGTTGTTTTTGCCAAAATTTTCATTCAAATCTGGTCATGAACAAT TGCTTTTTCTTGTTGCCAAGATGAAGTGCATATGAAAGCAGAACTGAACTGGGCATAAGGTGTATTTTAAAGAAACTTCT AACATTTCCGCTAAGTTTTTCTGTGCGTAAGTTCAAGAATGCCAAATGATAGCATGCTTTTGAGATATTGATCCACAGCT TGAGAAAGATCTCTATATGATGGCTGCATGCATGGACCTTAAACATCCACAAGGTATTATGGACTTGTGATGTGATTAAC CCAGGGCCTTATATTGGGAAATTGTACTGATGATGCCTAAGACGATATTTGAAGAGGATGCGTAGTTTGTCATATGTTTG TTAGAGCTGCAATGAAGTTGGAGAGGTTGATGCATAGTTGCTCAACATTCTTGGATGATTGGCACACAATCTTTAACATG TTGAGGTTGTTTATACAACCTATAATTTTGCATTTCTGTACGTCACATCATGTGAATAGGAATTGGATTATATATTGCCA TTGGGATTAGATGCTTATTCATTTTCTGTTTTTTTTTTTAATATTCTGATAGTAACCCGGGAAGGATTTACCCGAGTATG GGTGAAGCATGATTAGCCCACTTTGTTTGCGTGCATAACCACAATAGAGGTGGTGGGCAGGTTGAAACGCTTTTCTCTTA GTTATTGTTAAGGCATAGGTTGCTAAATGGTACAATGATGAGTATAGAGAGCAATATCTTCTACTCTGCCAGCAACTGTT TGGGAAGTATATGAGATGGGTTGTCTTCATAACTCCAACTTAAGCCTTTTGTGACCTATAGACACCACCACCAATTCCTT AGATCCTAATTTTGTTTTCCTTTCCCGTTTTGTTGGGTTGGAGGTATTAAGTATGCGATGGTTCATACCATTTGTATTCC TAACAGTCCTTAAGTTACACTCTGAAATTGCGCTAATCTTAAAGTGAAATAGGAGTGATTTACAAGTTGAAGATATTATA CATGCCATCTAAAAGTCCCGTAAAACTAAATTAGAGAGGATGTTTCAAGTATTGGAGAAATCAAATGTGTTATGAATTAT ATTTCTAACATTTATTGATGTATCAGATTGAAGTCTTTAAAAGAAACTTTAATTGAAAGATAATCATTACCAGGAATGAA CGGTACAATCTTTTAACATATGTGCAAAATAAGGGGATTTATAAAGAATTAACAATGTTAAAGGAGATTAAAAAACTTTA TTTGTGAGTGATAAAAATAATTAAATTCGTTAATAACTAGTAACAAAACTTAACATTGATATCAAATAAAGGATTTTTCT TTTGTTCTTGATAACAATATTAAAACATGTTCTAACTTTGTTTTCCGTATGATTACTAGGAGTTTATTTATAAGTGGAAA ATAGGACTTAAGAATAAGGGGTTGCTAAGGAAACATATTTCAAAGATAGTTTTAAAGCAACAAAAAAAGAAAAAAAGAAA TGGTGGCAAAGCATTACCAAAACTTGTAGTTTAAAGCGAATCATGTTATCAACCTTATAGAGGGGTATTTAATTAAACTC GTGTGAGGA
CDS sequence (LotjaGi1g1v0055500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGAAGCGAAAGCAACCGCAACGTTCACCCGCCGTCGAACCCGCCGCCAAGCCCGTCGACGTCGAACCCCAAGA CCAAGACTCGGTGGAACTCGACCACCAACAACCCCCTAACCCTGAACCAACCACTGACCTAGACCAATCCAACAACACCA TGGCCGTCGATGAAGAACCAGAAGAACAAGATCAGGAAACCGAAGATCAGCCTCAAATCGACGACGCCGTGGAAGAGGAA CAAGACCCAGAAGCACCAGCAACAACAGAGTCTGAACCACAACAACAACAAGAAACCCTAGAAGATAACGCTGATGCTCC AAACGAATCTTCCGCTGCCGCCGCCGCCGCCGCCGCCGCTTCGGAATCGGTTGCGAATGGGAGCAACAACAACGAGGAGG AAGAAGAGGAAGAGGATCTCGAATTGGAGGAGGAACCCGTCGAGAGGCTTCTGGAGCCATTCACGAGGGAGCAGCTGCAC TCTCTGGTCAAGCAAGCGGCGGAGAAGTACCCTGATTTCGTCGAGAATGTTCGCCAGCTCGCCGATGTGGACCCCGCTCA CCGGAAGATCTTTGTTCATGGCCTCGGCTGGGACACCACCGCTGAAACGCTAACCAGCGTCTTCAGCAAGTACGGTGAGA TCGAGGATTGCAAGGCGGTTACCGACAAGGTTACTGGGAAATCGAAGGGATATGCATTCATCTTGTTCAAGCATAGGGAC GGTTGTCGCAGGGCTCTGAAGAATCCTCAGAAGAAGATTGGGAACCGAACGACCTCGTCTCAGTTGGCATCCGCTGGACC GGTGCCGGCAACGCCGCCGAATGCTCCTCCGGTTTCTGAGTACACCCAGAGGAAGATCTTTGTGAGCAATGTGAGCTCGG ATATTGAACCATTGAAGCTGCTTGAGTTCTTCAAGCAGTTTGGGGAGGTTGAAGATGGTCCCTTGGGGCTTGATAAGAAC ACCGGGAGGCCGAAGGGGTTTGCGCTTTTTGTTTACAGGTCGGTGGAGAGTGCCAAGAAGGCTTTAGAAGAGCCAAACAA GGAATATGAAGGGCACACTCTGTATTGTCAGAAGGCTGTGGATGGTCCTAAGGGGAGCAAAGGGTATCATCAGAACCAGC ACCAGCACCAGCACCAACACCATTCTCACCATCATCAGCCTCACTATCAGCCGCATAAGAAGCACAAGTACAACTCTGGT GGTGGGCCATCACATGGTGGTGGTGGTCACCTGATGGCGCCATCGAATCCCGGCATGGGAGGTTATAACCCTGGTGTGCA GGGTCAGGGGTTGAACCCTGCTCTAGGGCAGGCTTTAGCTTTGCTTGCTAATCAAGGAGCTGGGTTGGGGCTTGGGAACC TGCTTGGAACTTTTAGTGGTGCACCAGTGAACCAGGCTGGACCACCTGCTGCTGCTCCTTATGGTAATCAGGCTCCCATG AACTATGGGAACCAGCCAGGGATGCAACCGGGATACCAGAATCCTCAGATGGGACAGAACAGTGGTGTTAGACCTCACCC TGGTTCTGGAGCTCCCTATATGGGTCATTAG
Protein sequence (LotjaGi1g1v0055500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKRKQPQRSPAVEPAAKPVDVEPQDQDSVELDHQQPPNPEPTTDLDQSNNTMAVDEEPEEQDQETEDQPQIDDAVEEE QDPEAPATTESEPQQQQETLEDNADAPNESSAAAAAAAAASESVANGSNNNEEEEEEEDLELEEEPVERLLEPFTREQLH SLVKQAAEKYPDFVENVRQLADVDPAHRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGYAFILFKHRD GCRRALKNPQKKIGNRTTSSQLASAGPVPATPPNAPPVSEYTQRKIFVSNVSSDIEPLKLLEFFKQFGEVEDGPLGLDKN TGRPKGFALFVYRSVESAKKALEEPNKEYEGHTLYCQKAVDGPKGSKGYHQNQHQHQHQHHSHHHQPHYQPHKKHKYNSG GGPSHGGGGHLMAPSNPGMGGYNPGVQGQGLNPALGQALALLANQGAGLGLGNLLGTFSGAPVNQAGPPAAAPYGNQAPM NYGNQPGMQPGYQNPQMGQNSGVRPHPGSGAPYMGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 508 | 508 | 1.4E-200 | – | |
| MobiDBLite | 1 | 145 | 145 | - | – | |
| PANTHER | 1 | 508 | 508 | 1.4E-200 | – | |
| MobiDBLite | 32 | 54 | 23 | - | – | |
| MobiDBLite | 55 | 86 | 32 | - | – | |
| MobiDBLite | 87 | 106 | 20 | - | – | |
| Coils | 117 | 145 | 29 | - | – | |
| MobiDBLite | 129 | 145 | 17 | - | – | |
| SUPERFAMILY | 177 | 257 | 81 | 4.97E-22 | ||
| Gene3D | 179 | 266 | 88 | 2.6E-21 | ||
| CDD | 188 | 263 | 76 | 2.78734E-29 | – | |
| ProSiteProfiles | 188 | 265 | 78 | 14.897 | ||
| SMART | 189 | 261 | 73 | 2.1E-20 | ||
| Pfam | 190 | 257 | 68 | 1.5E-14 | ||
| MobiDBLite | 249 | 277 | 29 | - | – | |
| MobiDBLite | 251 | 267 | 17 | - | – | |
| SUPERFAMILY | 268 | 379 | 112 | 1.48E-21 | ||
| Gene3D | 279 | 389 | 111 | 5.4E-18 | ||
| ProSiteProfiles | 284 | 361 | 78 | 13.396 | ||
| SMART | 285 | 357 | 73 | 4.8E-17 | ||
| Pfam | 286 | 354 | 69 | 8.9E-12 | ||
| MobiDBLite | 362 | 425 | 64 | - | – | |
| MobiDBLite | 371 | 399 | 29 | - | – | |
| MobiDBLite | 469 | 516 | 48 | - | – | |
| MobiDBLite | 478 | 503 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0055500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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