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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0058100 |
| Transcript ID | LotjaGi1g1v0058100.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | T-complex protein 1 subunit eta; TAIR: AT3G11830.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q9SF16|TCPH_ARATH T-complex protein 1 subunit eta; TrEMBL-Plants: tr|G7K2W1|G7K2W1_MEDTR TCP-1/cpn60 chaperonin family protein; Found in the gene: LotjaGi1g1v0058100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8124527..8130432) extracted from Lotus japonicus Gifu genome v1.2.
GTATGAATATGATTAAATAACTTTTTCTTATTGTATATTTTTATTTGCCAAAAATGCAAAGCTCATTGATAAAAGGGCCT AGAGGCCCAAAAAGGTTGGGTACAAAAGAGGGCCCAAAACATGATAGAAAAAAAAACCAAGGCCCAAAATAGACACAGTA TCAGAGGAAAAACACTGACTCACTCACACTCATTCACAATACTCACTGCGAAAGAGAAGAGAATCAGAAACTGCAACTTC GAACTTGAAGCATAAACCCTAACTCTCCCTCTCATTCTCTGTTCTCTCTCGTCTTCAACCATGTCTTCTATGCTGGTACT CTCTCTCTCCTCTCTCACTCTCTCTCTTCTGTTATCTGTGTTTCTCTAACCTAACCTAACTCTCATTTTGTGTTGTGATT TGGAAATGGTGATGACGATGATGCAAACAGCAACCACAGATCATTCTCTTGAAGGAAGGCACAGACACCTCGCAAGGGAA AGCGCAGCTCGTCAGCAACATCAATGCCTGCACCGCCGTCGCCGACGTCGTCCGCACCACCCTCGGCCCTCGCGGTATGG ATAAACTCATCCACGATGATAAGGGCTCCGTCACCATCTCCAACGACGGCGCCACCATCATGAAGCTCCTCGATATCGTT CACCCCGCCGCTAAAATCCTCGTCGATATCGCAAAATCTCAGGACTCTGAGGTAACCAACCACCACCCCCTCCGATCTCG CGCGATTTTTTATATTTTCATATTTTATTTAATTAATTTTCTGTGATGTGGTGATTTTGGTAACCGTTTTTGCTTGATTT AGAAGCTTGAAATCGTTTAAATGCGTTCTTGTTGTTAATTTTGTTGTGAATGTGAAGGTTGGCGATGGAACCACCACTGT GGTATTGCTTGCAGCTGAGTTTCTAAGAGAGGCCAAGCCTTTTATCGAAGACGGCGTTCACCCTCAGAATTTAATTAGGA GCTACCGGACTGCGAGCACCTTGGTACGTGTTTCGATCTCGAATACTTTGTAGAGTATTGTGAATGACTTGTTGCGGTAT TTTAATTGTTATGTGTGATAAATGGTGCAGGCGATTCAGAAGGTTAAAGATCTTGCTCTTAGCATTGAGGGAAAGAGTCT AGAAGAAAAGAAAAGCTTGCTTGCTAAGTGTGCTGCTACCACGCTTTCTTCGAAGCTTATAGGTGGAGAGAAAGAGTTCT TTGCATCCATAGTTGTGGATTCTGTTATTGCAATTGGGAACGATGACAGGTTGAACATGATTGGAATTAAGAAGGTACCT GTGTTGCTGCTTCTAGGACCTTGTCTCTATATGCTGCACTCTCTCTTTTTACATTCGTAGCTGCGGAATGTGTTTTTCAG TAGAAAAAAATTATTGGCAAAAATAAGAATATGAAAAATAAAGGGTCAAGTATACTCTTAAAACGTATGCATTACTACCA AAAGACACACCACAAAAACCTAATCAATGTATTAAGGCCATGTTGCACCTGTGCGTGTGTAGCCGTGTACTGTTCTACGA GTAAAGTAAGAGATTATAGTGTGTACTTTCTCAGGTTTAAAGTTTAAAATGGCTAAAAGCGTTCAATAAAGCTTTTCAAA ATAATTTAAATGCTTATTACACGGCATCTCAGGAAAAATGTTTAACTATGGCAAGATCAATTTCACATCATTTATATACT TATTTTGGAATTAAGTTGATGGGGATTCTGCTGTTTTTCTTCAGGTTCCTGGTGGTACCATGCGGGACTCGTTTCTAGTA AATGGTGTTGCGTTCAAGAAGACATTTTCATATGCTGGGTTTGAGCAACAGCCCAAAAAGTTTTTAAATCCAAAAATACT ATTACTTAATGTTGAGTTGGAGCTAAAATCTGAGAAAGAAAATGCTGAAATAAGGTGTGAATATCCAGAATTTGTTCTTA TATGTATTCAGTTTTAAGAACACCCTGTTGAAGGATTTTTAGTTTACGTGACTTCCTTCTGTCTCTCTTGTTCTTTACAG ATTGTCCGATCCATCACAATATCAGTCAATTGTTGATGCAGAATGGAATATTATTTATGACAAGTTGGATAAATGTGTGC AAAGTGATGTCAAAGTTGTTCTTTCACGATTGGCTATTGGTGATCTCGCTACACAGGTTTGAATTGTTTTCTTCAATATT TTTTTTTACATGAGTGTACATTGGTATTCTTATAACTGTTCATGATAATCTTAAAAATATATTCTTTTTACTGGGTTTCT TAAAAACTTTCATGGATATTAATATTAGTTTTGATTTTTAATAGCTTGTCCTTGAAACAGTATTTTGCAGATCGAGACAT TTTTTGTGCTGGTCGTGTAGCAGAAGAAGATCTTAAAAGGGTTGCTGCCGCAACTGGTGGAACTGTACAAACATCTGTCA ACAACATTATCGAAGAGGTTGTGAATTATTTGTGGGACTCTGCCTTGGTTTGCTCATTTTGTGATATCATTACATGCAAC TGAAATTCTTGATTTATCTGCTTGAAGGTTCTTGGAACTTGTGATGTTTTTGAGGAAAAGCAGGTTGGAAATGAGAGGTT CAATATATTCAGCGGATGTCCATCTGGTCAAACAGCCACCATAGTTCTTCGCGGCGGAGCTGATCAGGTCTGTTTGAGGT CTTGCAATAACGGTTTATATAGTTTGTATTCAACGCGATTAATCGATCTGCCCATTCGTTGGCTTATAGTTGTTTTTTTG CTATTCTCTTACAGTTTATAGAAGAAGCAGAGCGAAGTCTGCATGATGCGATCATGATAGTTAGAAGGGCTTTGAAAAAT TCAACTGTAGTTGCTGGTGGAGGTGCTATAGATGTATGTCTTCAAACTTTGTTGGTAGATCACATAGAATTATTTTAGTG AGTGTTTGGATGTTAAAATGAGGTGGTTATTGTTGACAGATGGAAATTAGCCGGTACCTGAGGCAGCATGCGCGTACAAT AGCAGGGAAGTCTCAGCTTTTCATCAACTCGTATGCAAAAGCTCTTGAGGTTAGTGTCTTTCGCGATTCAGTGTGATCCT CTGATCATCAACTCGTATAAAAATAATCAGCACTGTGTTTCTTTACATTTGTTTTGATTGAACATTGGTGACATTGAAAA AGTTGTGATCCATATGCAATAAACTCGTAATTCTTGAAGTTCTTGAGGATGCTTGTCATTGTCATTTTTGTCAAAGATCA GAAACTTCTAATCATCTGCCTTAGTATTTTTTTTAACTTTTTATTATGGGGGAAGGGCGTGGGAACGGAACTGTCCTAGA TGTTGGCAGCCACTGACCATAGAAATATCATATCCAGTAGTTTTGCTGGATATACTTTCTTTCACAAAGAGATGGGCTCA TCTTGAATTATCACTATACATCTGATGTAACATGCATATTAGCTTGGGAACTGTACGATATGAGATATGAAGGGTTAGAG ATCTCATTCTTCTTCGCATAGAATATAGTTATTTAATTGCAGTTATGGTGTTTTTGCAGGTTATACCTAGGCAATTATGT GACAATGCAGGATTTGATGCAACTGATGTGCTGAACAAATTAAGGCAGAAACACGCGCTTCCTTCTGGTTAGTGCTTCTT TCGATATCCATGCTTACTTACATGTGTTATACAAAAGTATGTGCCGGCATTACATGCAGAGCCATTGAAAAGTGGGGCTG CAATTGAGCCAAGTCTAGATATTCAGGTTGTTCAATTAAGAGCAGACTATGCTAGAGCTGGAGCTTATTTTGTGTTAAAG GTCATTGTTTAATAAATGAACTGAGCTCTAGTACTCATTGTTTATGAATAATAATAACAACAGCTACAATGACAACATTT GCATACTTACTCACTCACACACACGAAATGAATCAATTTAAGTGAAATATTTGTTTAGAATGTTATTATTACATTGTCCT CTCCTGTTAAATATTCACACCGTCCAACTTTTTTTCGCGATATGCGTTATCCAAATATATAATTAAATTTGTAACTAAAT TCTCGGGTTTATCTCAATCAATTAAAGTTGTTCAAGCTTGTTTATTTGAAAAATAAGGTGAATGACTGATCCTGATTGCC GAGTAATTGTTTTGGAGTCTATATTTGATAAATTTATTCTGCTTTAGGAGTATTTTGATAATATGTTAACTATGTAGGAA CATAGACCATATTTTCTCTTCATTATACTCCACTTCACTCCATTAGTCTTGAAATTTTGCTCAAGGACTTTCTTTTAATA AAAAACAACGAAGCTAAGTTTTTAGCTAGTCAGGTGCTAATAGATTATAAAATCTAAATAGCTTAATTGCTTGAAACCCC TACTCAAACAGCAACTATATAATTTGTCTTGACAGAAGTTTACTTAGATTCAATTGATGCAGTCATATTTAGTATTTTCG CTTACAATATTTTTATCTCCTCAGCACTTGAGCAACTTCAAGTATGTGTCTGAATGTTTGGGTGTGATTGCCAATATCTA TAAATGCATCAGCTATAGTGTGTTTTAAAGAGCTCTTTTGATAGGTTGGAGTTAGTCGTTATAAATTGCACTGCATTTGT GTTACAGGTGAGGGGGCACCATATGGAGTGGATATAAACACTGGTGGAATTGCTGACTCTTTTGCTAACTTTGTCTGGGA GCCTGCAGTTGTAAAGGTATTTGCATTTATCTACACAGTTTTACATTCTGACTTCAATGTTTTATGTGGATTGTTTAAGT AAGTTTATAAATCTGCAGATCAATGCTATAAATGCTGCTACGGAGGCTGCTTGCCTTGTCTTAAGCGTGGATGAAACAGT TAAAAATCCCAAGGTAAATGACCGACTGATTATATCATTGTGTATTTGGTGAATATTGTGTTTTTGTTCTTTGAAATATT TCCTTTCTGACTTTTTCAATTTGAAGGCAAATATTTCTTGCATATTAATTACATATGTGCAAATTTCACTTTTTTTTTTG ATGACTCATTCTCAATTCTTTTAGTTGAAGACTTAGTATCTTGAAAGGATAATGCTATGTAAATTTCCATTTGGATATGT GCAGTGTAACATCAACACTTCTCTGAATAATTCACCTGCTGTTCTATTTTTAAACACTCTTTTGTCTATTTAAGTTTTTT CATGTATCTTCATGCATCAAGGAATGAGTTCTAGTTGTCATGTTTTTTTGCCCTTGCAAATTTCACGTAGTGTTCAATGA AAATGATAAAGTTCCTCCTTTAGATTATACCAATGCTTGTGCTGTCATAGCAATAAAGGAGGAACTTTGATGCAACTGAT TTTGATTGTTTTAACTATTATCATATGCAGTCGGAGAGTGCGCAAGGAGAGGCTGCAGCAAGTGCCATGGGAGGCAGAGG TCGCGGAGGTGGTTTCCGTGGTCGAGGACGAGGAATGCGTAGATGATGAGAAATGCAATCTAATGGGCCAGCATCTGTCT CATGCATTGATTGTCTAATTATACGCGGAAGGGCGCATTTCTGCCTTTGGTGTTTCTAGAAGCACGCCTTATTTTGGATT TGCAAGTGATGAAATTGTAATGGGGATTCTGGGAACATCATCTGATAAAACTAGGACTTGATGGTAGCTATTTTCAGGCA TTCTCTTTGTGGCATTTATTCATTATACGTTGTAGGGCTGAAACTACTGGGGTTATTGGTGTCTACATCTTTTTCGTGTG AAATTTTGCATCACCTCTGTTCTGCAGTTATCAACTATTTTTGTTACTTCGTATTTATATAAGCTTGTGATCTATCTGTT ACTTTATGCCTTGATAAAGTTCAAGAAGATGGCTTACAAATTGTAGAAACCATTAAGCAGATCAATCTGATGTTTAATGT TGAGCTGCGAATATAAAAGTTTTAAAAAATGACTATCAGCATGTTTGATAAATACTGCAGAATAGT
CDS sequence (LotjaGi1g1v0058100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTATGCTGCAACCACAGATCATTCTCTTGAAGGAAGGCACAGACACCTCGCAAGGGAAAGCGCAGCTCGTCAG CAACATCAATGCCTGCACCGCCGTCGCCGACGTCGTCCGCACCACCCTCGGCCCTCGCGGTATGGATAAACTCATCCACG ATGATAAGGGCTCCGTCACCATCTCCAACGACGGCGCCACCATCATGAAGCTCCTCGATATCGTTCACCCCGCCGCTAAA ATCCTCGTCGATATCGCAAAATCTCAGGACTCTGAGGTTGGCGATGGAACCACCACTGTGGTATTGCTTGCAGCTGAGTT TCTAAGAGAGGCCAAGCCTTTTATCGAAGACGGCGTTCACCCTCAGAATTTAATTAGGAGCTACCGGACTGCGAGCACCT TGGCGATTCAGAAGGTTAAAGATCTTGCTCTTAGCATTGAGGGAAAGAGTCTAGAAGAAAAGAAAAGCTTGCTTGCTAAG TGTGCTGCTACCACGCTTTCTTCGAAGCTTATAGGTGGAGAGAAAGAGTTCTTTGCATCCATAGTTGTGGATTCTGTTAT TGCAATTGGGAACGATGACAGGTTGAACATGATTGGAATTAAGAAGGTTCCTGGTGGTACCATGCGGGACTCGTTTCTAG TAAATGGTGTTGCGTTCAAGAAGACATTTTCATATGCTGGGTTTGAGCAACAGCCCAAAAAGTTTTTAAATCCAAAAATA CTATTACTTAATGTTGAGTTGGAGCTAAAATCTGAGAAAGAAAATGCTGAAATAAGATTGTCCGATCCATCACAATATCA GTCAATTGTTGATGCAGAATGGAATATTATTTATGACAAGTTGGATAAATGTGTGCAAAGTGATGTCAAAGTTGTTCTTT CACGATTGGCTATTGGTGATCTCGCTACACAGTATTTTGCAGATCGAGACATTTTTTGTGCTGGTCGTGTAGCAGAAGAA GATCTTAAAAGGGTTGCTGCCGCAACTGGTGGAACTGTACAAACATCTGTCAACAACATTATCGAAGAGGTTCTTGGAAC TTGTGATGTTTTTGAGGAAAAGCAGGTTGGAAATGAGAGGTTCAATATATTCAGCGGATGTCCATCTGGTCAAACAGCCA CCATAGTTCTTCGCGGCGGAGCTGATCAGTTTATAGAAGAAGCAGAGCGAAGTCTGCATGATGCGATCATGATAGTTAGA AGGGCTTTGAAAAATTCAACTGTAGTTGCTGGTGGAGGTGCTATAGATATGGAAATTAGCCGGTACCTGAGGCAGCATGC GCGTACAATAGCAGGGAAGTCTCAGCTTTTCATCAACTCGTATGCAAAAGCTCTTGAGGTTATACCTAGGCAATTATGTG ACAATGCAGGATTTGATGCAACTGATGTGCTGAACAAATTAAGGCAGAAACACGCGCTTCCTTCTGGTGAGGGGGCACCA TATGGAGTGGATATAAACACTGGTGGAATTGCTGACTCTTTTGCTAACTTTGTCTGGGAGCCTGCAGTTGTAAAGATCAA TGCTATAAATGCTGCTACGGAGGCTGCTTGCCTTGTCTTAAGCGTGGATGAAACAGTTAAAAATCCCAAGTCGGAGAGTG CGCAAGGAGAGGCTGCAGCAAGTGCCATGGGAGGCAGAGGTCGCGGAGGTGGTTTCCGTGGTCGAGGACGAGGAATGCGT AGATGA
Protein sequence (LotjaGi1g1v0058100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSMLQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPAAK ILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSYRTASTLAIQKVKDLALSIEGKSLEEKKSLLAK CAATTLSSKLIGGEKEFFASIVVDSVIAIGNDDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKI LLLNVELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSDVKVVLSRLAIGDLATQYFADRDIFCAGRVAEE DLKRVAAATGGTVQTSVNNIIEEVLGTCDVFEEKQVGNERFNIFSGCPSGQTATIVLRGGADQFIEEAERSLHDAIMIVR RALKNSTVVAGGGAIDMEISRYLRQHARTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPSGEGAP YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLVLSVDETVKNPKSESAQGEAAASAMGGRGRGGGFRGRGRGMR R
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 536 | 532 | 2.8E-281 | – | |
| PANTHER | 5 | 536 | 532 | 2.8E-281 | ||
| TIGRFAM | 6 | 531 | 526 | 2.7E-257 | ||
| CDD | 8 | 531 | 524 | 0.0 | ||
| SUPERFAMILY | 17 | 528 | 512 | 1.96E-86 | ||
| Gene3D | 28 | 526 | 499 | 9.5E-185 | ||
| Pfam | 35 | 528 | 494 | 3.3E-157 | ||
| PRINTS | 37 | 53 | 17 | 3.9E-30 | ||
| ProSitePatterns | 40 | 52 | 13 | - | ||
| PRINTS | 59 | 77 | 19 | 3.9E-30 | ||
| ProSitePatterns | 61 | 77 | 17 | - | ||
| PRINTS | 89 | 108 | 20 | 3.9E-30 | ||
| ProSitePatterns | 89 | 97 | 9 | - | ||
| Gene3D | 147 | 406 | 260 | 9.5E-185 | ||
| SUPERFAMILY | 155 | 406 | 252 | 2.38E-25 | ||
| SUPERFAMILY | 210 | 379 | 170 | 5.23E-49 | ||
| Gene3D | 216 | 370 | 155 | 9.5E-185 | ||
| PRINTS | 374 | 396 | 23 | 3.9E-30 | ||
| PRINTS | 408 | 420 | 13 | 3.9E-30 | ||
| MobiDBLite | 529 | 561 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi1g1v0058100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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