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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0058600 |
| Transcript ID | LotjaGi1g1v0058600.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L5; TAIR: AT2G42740.1 ribosomal protein large subunit 16A; Swiss-Prot: sp|P46287|RL11_MEDSA 60S ribosomal protein L11; TrEMBL-Plants: tr|I3T8M4|I3T8M4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0058600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8203653..8208884) extracted from Lotus japonicus Gifu genome v1.2.
TTGGGCTGGGCCGTTGGATGCTAACCAGGCCTCACTGAAAATAAAGAGTGTATTGCAATCAAAACTAAGGGTTTGCTCCT TCGCTATTACACACTCACTTCTCTTTACCCTGGCCGTGAACCCTACCACCCACCTCCTGATCCAATGGTATGTGCCTCTT CCCTTTCTCCTCCTTCTTCTTCTTCCTTCATCGCTTCACAGATTCGAATCCTCTTTTCACATTTTGATTCTCATGTTTTT CGTTTTGTTCTGAATTGAAATGAACTGAAAACCAGGCTTCCGAAAAGAAACTGGCGAACCCTATGAGGGAGATCAAGGTC CAGAAGCTCGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGTCTCACCAGAGCAGCCAAGGTTTTTCATCACTCTTA TTAGTTTTTTCTTCGTTATTTATTTTCAATTTTAAAATTGTTTTTTTTTTCTTTCTTTCTATGTTGCAGGTGCTGGAGCA ACTTAGTGGTCAAACCCCAGTGTTTTCTAAGGGTAAGAGTTCTAAACAAATTTCAAAATGGGTGGTTTATTTGTGCTAGT AGTGGATATGAGTCTCTAAAATCTGTTAATTTAAAGGGATTTATTTTTAATGAAATTAGTGTGTCAATTTTATTTTGGGT TTTATTGATATTTACCTATAGTGCTTGTGAAGTTAATTTGAAAGAGATAAACTCTAGGGTTCGGGTTTCGGTCTATTTTA GGTTTGAAATGGGAGCTTCATTGTTTTTATTGATTGCAATGTGAAGAGCCTGATTGTTGGGTGATATAGTGGTAGTTTAA TAGTTTGTAGCTTTTGGGAATTACAGTCATGTGTGAACCTTTTATGTGTAACTAAATTCACGTTAGGGAATTCATAGGAC TTAGGAATGGGGAATATGAGCATTAAGATGTCAATTATTGTGCAGAAAGTGTATCCCTTCCCTCGAACTATACCTTTGTT TTGTTTGTTCTGAATTAAACCTTGTTTTTGATGTTATAGTTTTGTCTGGTATCTGTGGTTGTCTTATCTTTGACTTTCTT AAGTATATTCTCTTCTGTTCTGGCAGCCAGATACACTGTTCGATCCTTTGGAATCAGAAGAAATGAAAAGATTGCATGCT ATGTTACTGTTAGAGGTGACAAGGCAATGCAACTTTTGGAGAGTGGATTGAAGGTTAAGGAATATGAACTTCTTAGAAAG AACTTTAGTGATACTGGGTGCTTTGGCTTTGGTATTCAGGAGCACATTGATTTGGGAATCAAGTAAGCTGAAGCACAGTT CTTTGATTTCATGCTATTGTTTTTTAACTTTTGTCAGAGAAAAACCTATTTAGATAGTTCTTGTGAGTCTACATAGTACA AACTATACTTATTCATGATTTTGAATCTATCATAATATTTGTTTCTTCACTGTTGAACTTGACTTAAGTGTGTTTGGCAG AACTTATTCAAGTTTAGCTTATGAAAATACCACATGACTAACTAAAACCTCTCTTTTAAGCTTATTTTGATAAGATTTGT TGATGGGTTTCTGAATAAATGCTTACTTATAGCTTCTTTTGTGCTTATCGTATTAAGTTTTCTGATTCTGATTATCATAA GTGCTTAAATGAGTTGTATACCCTAACCCAACCTCAAACCATATACAATTTTCTCTATTGCTGTTTCGGTTCTTTATAAA AAAGCTGTTTTATGATTCCTGTTTTATGTCAAGTGACTAGTTTCATTCCCCTCTTGTAGATTTTGAGGTTATGTTGTCAA TTTCTTTTATAATCCAGATTTAAAACTATTTACACATTATTTGTCCCTGGCCCATTTCAGGTATGATCCATCCACTGGAA TTTACGGTATGGATTTCTATGTTGTTCTGGAGCGCCCTGGTTACCGTGTGGGACGTCGCCGTAGGTGCAAGTCCCGTGTT GGGATTCAACACCGTGTCACAAAGGATGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTCAACAAGGC TCAGGCAGTGTTTTAATTCAACCAAGTCCACTTTAGGAGAGTATCTTATGTTTCCCAACTATAGTTTGATCTTTTTCAGA TAGTATGCTAAGTTTCAGACAGAATTTTTTGGCATCCCTCAGGTGTCCTTGTAGGGGCATCAGGCAAATTTTCAATGAAT ACTTTTGTTTGTCATTTTTGTTGTTTTATGATGAAAGCTCATGGATTTACTATTGTGCTGTTAAATGTTACTTGTGCTAA GTCCTGTAATGCATTGCAACAGTTTACAATGGTTTTTTTGCAACCAAATGTTACTTGTTTTTCTATGCAAAACAGACCTC GACATTATCTGTCAACCCACTTATTAGGTAGACTGGGTTTTGCTAAATATTTAAGCTCCCTCTTGGAATTTTTATACACT GAAACAAGTTTGTTTCTGTTGGAACTGGCCGAACCTATGTCTTTGCCTCATCCCTCATTTGGTGAAGAGTGAACCCTAAT CTCCATATACCACAGTTGCTACCCACTGTACACCTCTGCCAATGCTATGTCATGATGCTCATTATTGTCCAAACTCTGTC CATCATGCTATTGAACGCCCAGAATGCATGCACAATGCAAGTTGCCTCTGCTCATAGCTTAACACTATCCATGCTGCTCA CTTGAATCTTACATGTCACGTGTTCCACCCCCTTATTTTGAACCTATCATGATAACCTGGATTATCATGACTTTCTTTCC AATCCTTAAAAACATTAGGTTAGCTCAAATTGTAAGAGTTAGGGGACATAAGGGTGGGTGAGATGAATGGTGAAGGGTCC CGAGTTCGAACCCTGAGGAGAAACTAATTTACTAACATTATTAACCACTAACATTTTCCTATAAAAAAAGTTAGGGTAGA AATGAAACATATCAGGAACATTAAATTAATAAAGCATCCATCAACACTTTAAGAACAAGATTCTTACTCTTATTTCTCTG CCTTCATTGCGGTGCTGCAGCCACCATACTAGAGCATCTTCAAAATGGAGTGAGAATCAGAATAGAAAATAATGGAACTC AAAAGTAAAGGGTAGAAGTGACAACATCACAGAGAATATATTCTCGCTGACATCTAAATAAACAGAGCCATGGATTCCCA AAGTGGACAAATGAAGCAATATTTACACCCCAAGTAATAAAAGAATATTTGTATGATCAATTGAGGAGGAAGGGGAACCC AAGTGCTGAAACATGAGCAATTTCACACCTTTGCCAGGGCGTTGGAGGAGAGGTGTTAGAGCCTATGATGCTCACACAAC CAACACCAGTGAATCCAACGAAGTGCTTGTGTATTATAGATCTCACTCTACAAGGGTCAACGTAAGTATGTGCAGGTTTT GATTTAATACCATCATTTTTAAGAGATGGCAGAGAAAGAAATCAGATTAAATTCATGTATTTAGAAGCAGAGAGTTGAAC TATAGCATGTTCGGATCAACTTTTTATTGTTTTTAGAGTTAATTCTGAAAATCATACATAAGCTACTAACATAAGCTTCT TCTCAGTATTAATTATGGTTTTAGAATCAATTGTAAAATGATTTCCAACCATCCACTTATCAAGTGTGTGAGGTTAACTA CTAGTATGTAATTTTGGTTCATTTCAGCAGGATGAGAGGAGTTCAGGTGTACTAGATCCACTGCAGTGGTGGGAAGTCAG AACTCCTACAAGACACTACACTTTACCAAAGTAAGACCAAATTGCAAACTAATTTGCTTGAATTGAGACTTCCCTAATAG CATTAGTGTATTACATACATAGAAAAGAAAAGTAATCCCTACAAAGTCAGGATTTCAATTTTTTTTTGTTACTGAATAGC CAATCAAAGTACTATTCTCTAGAATTGAAAAGGAAGATCACAAGAGACAAGTTTATAGTTGTATTAAAATTCTTAGTACT TGCATGTAAGACAATGCACAATTTGATTTGAATTTTACATTAAATCACCTCAATTGATGTATTATTTTTCTTCTGGTGCT GTAGGACTAGCTAGTGGAACATGCTATTTATATTTTACAGCATGTTTGGAAATCCTTATTCTAAAGCCAAAAATCAGTTC TGAGAAAAAACTTCTGTGAGTAGCTACTAGTTTCTCAGTGCTAGAATTGATTCTGAGAAAAAATAAGTTGATCCAAACAT GTTGTAAGTTGCATGAACTTGTGATTTTTAGGAGAGGGAATCCTGATTGATTTACCCATTTTTAAGCAATTTTCAGTTTT CCAGCACAGCAACACAGCCACAGCAGGCAACAAACCAATGTTCCCAATGGGGACATGGGAAGAGGCTTCAACCCTAGGCT AAGACAGATTATCCAGCAGCCACATTCAAGATCCACACTCCAAACAAGCATACAAGCTCCCCAAGTGGAAGAAAACAGCA AACCAACAGCTTTGAGCAAGCTTAAGAAAGTGATTTACAATAACAACACTACCCCAAAGAGTTTAGCTAGGAGAGTGAGC TTATACTATAGAGATAATTCCAATGCTTTGAAAGAGAGGGTGAAAGAAAATGATGAAGATGGCAAGAGGTGTGCTGTTTG CTTGGAAGATTTTGAACCCAAAGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGACTGCATAATGCCTT GGTTAACAAGTAAAGGCCAGTGCCCAGTCTGTAGGTTTGTGATTTGGGAGAGGGTGAACAACAACACTTCATCATCTTTC AACAGGAATAATGATATTGTTGCCAATTTGGAACCTGGTGACCTGATTGGTGGAGAGCTTTTGTCAATTCTGAGGGCCAT GGAAGTGGCTTTTCACTTGGGGAGCATAAATTACACATAAGAGTTTTACTAAAATTAGTCTGCATCGCATCATTAGTAAG AATTTGCTTAAAGTTGGGGTGAAGGTTTGATTTAAAAGTTTTTATCATGTAATGTAAATCTTGATAGGCGGGGCTTATGA GTTATGCAAGCGACATTGGCAAAATGATCAGAGTAAAAATCATGTAATAACCAATATTAAGTGTAGTAACTTAATATTTT GTCCATCCTTATAATTTTGGAGATCCCAAATGTAGTTCAACCAGTAAAAAGAAAGAGAAGTATTAAAAATTGTTAAAGTG AATGTTGAAAACATTTCTCAAATAACTATACCATGTTATCATAAAAAAATTACTTAATATCAAGAAGTTTTTCACCTCTT TTGTTTACACCTCTTTTTCTTTTAAAGTACCT
CDS sequence (LotjaGi1g1v0058600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCGAAAAGAAACTGGCGAACCCTATGAGGGAGATCAAGGTCCAGAAGCTCGTCCTCAACATCTCCGTCGGTGA GAGTGGAGATCGTCTCACCAGAGCAGCCAAGGTGCTGGAGCAACTTAGTGGTCAAACCCCAGTGTTTTCTAAGGCCAGAT ACACTGTTCGATCCTTTGGAATCAGAAGAAATGAAAAGATTGCATGCTATGTTACTGTTAGAGGTGACAAGGCAATGCAA CTTTTGGAGAGTGGATTGAAGGTTAAGGAATATGAACTTCTTAGAAAGAACTTTAGTGATACTGGGTGCTTTGGCTTTGG TATTCAGGAGCACATTGATTTGGGAATCAAGTATGATCCATCCACTGGAATTTACGGTATGGATTTCTATGTTGTTCTGG AGCGCCCTGGTTACCGTGTGGGACGTCGCCGTAGGTGCAAGTCCCGTGTTGGGATTCAACACCGTGTCACAAAGGATGAT GCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTCAACAAGGCTCAGGCAGTGTTTTAA
Protein sequence (LotjaGi1g1v0058600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ LLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKDD AMKWFQVKYEGVILNKAQAVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 178 | 178 | 4.7E-122 | – | |
| PIRSF | 1 | 172 | 172 | 3.2E-43 | ||
| PANTHER | 1 | 178 | 178 | 4.7E-122 | ||
| Gene3D | 1 | 177 | 177 | 3.9E-86 | ||
| SUPERFAMILY | 9 | 173 | 165 | 1.32E-57 | ||
| Pfam | 9 | 62 | 54 | 2.3E-20 | ||
| ProSitePatterns | 39 | 55 | 17 | - | ||
| Pfam | 66 | 164 | 99 | 1.3E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi1g1v0058600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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