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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0066300 |
| Transcript ID | LotjaGi1g1v0066300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleobase-ascorbate transporter-like protein; TAIR: AT2G05760.1 Xanthine/uracil permease family protein; Swiss-Prot: sp|Q9SHZ3|NAT1_ARATH Nucleobase-ascorbate transporter 1; TrEMBL-Plants: tr|V7B7T3|V7B7T3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0066300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9153556..9157037) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAGCAATACAAGGAGCACTTATTGTGGCCTCAAGTATTCAGATAATCCTGGGTTACAGCCAAGTATGGGGACTTTT TTCAAGGTATTCTACTTGCATGTGACATTGCTTGTGAATTGATAATGATTAAAGACAAAAGTTGAAGCATTTCATTTTAT GGTCTTCTCCAGATTTTTCAGTCCTCTTGGTTTGGCACCTGTAGTTGGATTGGTTGGATTAGGGTTATTTGAACGCGGAT TCCCTGTGGTAGGTGTGGTTCAAATCTCTATTTTAATTGTCATTGTCTTTGTTGAATTTTTTGTACAAAATGATCTTCTA ATGAAAGCAATTTATGTGACTGCATTATATGGAAGAATGTGTTATTTTTAATGATGATAAACAATGATATTTAAGGCACC AGTTTTCAGTTCTGAATTTGATCTAAGATTTTAGTTTCTAGGTATTGGAGAGCTTTGCCTAGTTTCTGTCTTTCTGAATT AGTTGATAGTGGCATAGTGCTGAATTTGCACGCGGATATTGATGGCATTTTCTTCTACAATTTTTTTTTAATTCACCTTG CTGACTATATTCCTGAATTATTTGATAATGTCATAATGCTTACTTAGCATATACACATTGATGACATTTTCTTTAGCAAA ATCCTTTAGTTCACCATCCTCACTACATCTTCATAAATTTATACATTTTTCTTCATGATCTCTTTATCAGTTAGGAAACT GCGTAGAAATTGGTATACCAATGCTGTTGCTGGTAGTTGGGTTGTCACAGGTAAGTGCTTAAATTTAACAAGAACATCTT GGTGTGCTGTGCATCATATTACATTTCTTAATACAAATTAATTTGCCATAAATTGCAGTACCTAAAGCATGTGAGACCAT TTAGAGATATCCCTATCTTTGAACGTTTTCCAGTGTTGATTTGTGTCCCAATTGTTTGGATCTACGCTGTTATATTGACC GCCAGCGGAGCTTACAGAGATAAACATTTCAGAACACAACAAAGCTGTCGTACAGACAGAGCAAATCTAATCTCTGCTGC CCCATGGTACATCAGTAAGCCTATTTTGATCTCTTTTGGTAAGTTCTAAAATTTTGCAAAGGCTCTGAGGTTTCTATTTT CACTGTAATAGGTTCATGTTCCCTTACCCCCTCCAATGGGGTCCACCTACATTTTCTGCTGGCCATTCATTTGCTATGAT GTCAGCAGTTATTGTCTCCATGGTCGAGGTAGTGATCTCATTCCTGATCTTGTTTTTTTTTTTTGTTGGCAATTTTGGCA AGTTAAACAGCAGTTTTGTTGGCTAAAGAAACGTATTATCAAATTTCGAATATTTACAATCACCAGAATAGTCTCTCGGT GGGATAAGGCTTTTGTTGTTGTTGTTATTGTGTATTGACCATGTACATCTTGTTGCAGTCTACTGGAGCATACAAGGCAG CGTCGCGGTTAGCGATTGCCACTCCACCTCCTGCTTATGTATTGAGTCGAGGCATTGGTTGGCAGGTAAATGAATCTGCA CAAATCTTTTTTTGTACTATTAAATTGCTTAAGGACTAAGGTTATGTTTGAAGAATTTAATGATGAGTGGCATGAGATGG AACGGAATAGAGTAAATGAATCTGCACAAATCATTTTGTACTATTGAATTGCTTAAGGACTACGGTTATGTTTGAAGAAT TTAATGATGAGCGGCATGACATGGAACGGAATAGAGTAAATGAATCTGCACAAATCATTTTGTACTATTGAATTGCTCAA GGACTAAGGTTATGTTTGAAGAATTTAATGATGAGTGGCATGAGATGGAACGGAATAGAGTGTTATGGAATGAAATGGAG TATAGATAATGCAATGTTGGGAGTATAGTTTTTGTTTCATTTTTTGTGAAAGTGTACGAAGTCAAGGAATGGTGCATAGA GCAGTTCCCTCCCATATTCTCCAAATTTGGGCTATTGAGTGGAATGAAATAGGGTATATTTGATTTTGTTATATTCCAAT CCATTTTAAAATACTTTGAACAATAGCAACTAATGTCATTCAATTAAAATTTGTACCATTCCATCAAGGCATCAATCCAA ACATAGCTCAGATCATGCCTGCACGATAATTCGAATAGTTTGATACTTTAATCCCGTGATCAAAGACTGGACAATGTTTT GTGTCATCATCCAGCATGATCTTATTTATTTTTAACAGGGTATTGGCATCTTGCTTGATGGTCTTTATGGGACAGGGACA GGTTCCACGGTTTCTGTGTAAGTTCTACTCTTCATTGAGTTTTAACTTCAAGTTGTTGCTTCCATTGTTAATTTTTTGGG TGGTAAACTCTGCAATTTGCTTCTTCAATATGATATTTATCTTTCAAATCAATAGTAACTTGGTATGCAAATCATGGCTG TTTATTGTAGGGAAAATGTGGGACTCCTTGGACTAACCCGAGTTGGAAGTCGCAGAGTAGTTCAGATTTCTGCTGGCTTT ATGATATTCTTCTCTACTTTAGGTTGGTATAGAAAAATCAAATATAATTAAAATTGTTTCAGCTTTACAATATAAGTTAG CAATGGTTTTATGATGTTTTTGGTTTTGTTTTTCTTCGATCATTTGCAGGAAAGTTTGGAGCTGTGTTTGCATCTATACC CTTCCCTATATTTGCTGCTCTATACTGCATTCTCTTTGGCCTTGTGGGTATGTCATACCAAATCATCTCAAGTGAGATTC AGGTTCCATACTTCAGTCCTTGTTCTTATGTTAACTTGTTCTTTTATTTGTTTATCAGCTTCAGTTGGAATATCATTTCT TCAGTTCACAAACTTGAACTCTATGAGAAATCTCATCATCATTGGGCTCACATTGTTCCTTGGAATATCTGTTCCTCAAC TCTTCAACCAATACTGGACTCCTGCGCGACATGGCCTTGTTCATACTAATGCTGGATGGGTGAGTTTTCTATAGCTATTG GTTAGATGGTGAAAATTGACATGATCAAGTATTTTTACAATTGAGAGAATCGTGATCCGTTTTCTATATGCCCTTACAAT ATTTGTGCTTTATCAAGAATTTGTTGCTGTCATTTTCATTTGTTTCTTGACTTCTATCAATAAATTTGAGCTTTTGAACT TTGATTTGATATGCTGGTTGCCACTATTTACTTTGGTTCATCTTTAAAATGTTGCATGTTCTTAAACTCTACAACACCAA AAGCTATGAGTGTGCCATTATTTTACTTTCTAGTAGTTTTCTCTTAACACCAAATTCTTCACTTTGCAGTTCAATGCATT CTTAAACACCATATTCTCATCACCAGCAACAGTTGGTCTTATAGTAGCAGTGTTGCTTGACAACACACTCGAGGTAGAAA AGTCAAAGAAAGACCGAGGGATGCCATGGTGGGTGAAGTTTAGAACGTTTAGAGGAGACAATAGAAATGAAGAGTTCTAC ACTTTGCCATTTAATCTCAACAGGTTCTTTCCACCTACTTGA
CDS sequence (LotjaGi1g1v0066300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGCAATACAAGGAGCACTTATTGTGGCCTCAAGTATTCAGATAATCCTGGGTTACAGCCAAGTATGGGGACTTTT TTCAAGATTTTTCAGTCCTCTTGGTTTGGCACCTGTAGTTGGATTGGTTGGATTAGGGTTATTTGAACGCGGATTCCCTG TGTTAGGAAACTGCGTAGAAATTGGTATACCAATGCTGTTGCTGGTAGTTGGGTTGTCACAGTACCTAAAGCATGTGAGA CCATTTAGAGATATCCCTATCTTTGAACGTTTTCCAGTGTTGATTTGTGTCCCAATTGTTTGGATCTACGCTGTTATATT GACCGCCAGCGGAGCTTACAGAGATAAACATTTCAGAACACAACAAAGCTGTCGTACAGACAGAGCAAATCTAATCTCTG CTGCCCCATGGTTCATGTTCCCTTACCCCCTCCAATGGGGTCCACCTACATTTTCTGCTGGCCATTCATTTGCTATGATG TCAGCAGTTATTGTCTCCATGGTCGAGTCTACTGGAGCATACAAGGCAGCGTCGCGGTTAGCGATTGCCACTCCACCTCC TGCTTATGTATTGAGTCGAGGCATTGGTTGGCAGGGTATTGGCATCTTGCTTGATGGTCTTTATGGGACAGGGACAGGTT CCACGGTTTCTGTGGAAAATGTGGGACTCCTTGGACTAACCCGAGTTGGAAGTCGCAGAGTAGTTCAGATTTCTGCTGGC TTTATGATATTCTTCTCTACTTTAGGAAAGTTTGGAGCTGTGTTTGCATCTATACCCTTCCCTATATTTGCTGCTCTATA CTGCATTCTCTTTGGCCTTGTGGCTTCAGTTGGAATATCATTTCTTCAGTTCACAAACTTGAACTCTATGAGAAATCTCA TCATCATTGGGCTCACATTGTTCCTTGGAATATCTGTTCCTCAACTCTTCAACCAATACTGGACTCCTGCGCGACATGGC CTTGTTCATACTAATGCTGGATGGTTCAATGCATTCTTAAACACCATATTCTCATCACCAGCAACAGTTGGTCTTATAGT AGCAGTGTTGCTTGACAACACACTCGAGGTAGAAAAGTCAAAGAAAGACCGAGGGATGCCATGGTGGGTGAAGTTTAGAA CGTTTAGAGGAGACAATAGAAATGAAGAGTTCTACACTTTGCCATTTAATCTCAACAGGTTCTTTCCACCTACTTGA
Protein sequence (LotjaGi1g1v0066300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGLAPVVGLVGLGLFERGFPVLGNCVEIGIPMLLLVVGLSQYLKHVR PFRDIPIFERFPVLICVPIVWIYAVILTASGAYRDKHFRTQQSCRTDRANLISAAPWFMFPYPLQWGPPTFSAGHSFAMM SAVIVSMVESTGAYKAASRLAIATPPPAYVLSRGIGWQGIGILLDGLYGTGTGSTVSVENVGLLGLTRVGSRRVVQISAG FMIFFSTLGKFGAVFASIPFPIFAALYCILFGLVASVGISFLQFTNLNSMRNLIIIGLTLFLGISVPQLFNQYWTPARHG LVHTNAGWFNAFLNTIFSSPATVGLIVAVLLDNTLEVEKSKKDRGMPWWVKFRTFRGDNRNEEFYTLPFNLNRFFPPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 398 | 398 | 6.5E-260 | ||
| Pfam | 1 | 310 | 310 | 1.0E-51 | ||
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 1 | 398 | 398 | 6.5E-260 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 28 | 9 | - | – | |
| Phobius | 29 | 48 | 20 | - | – | |
| TMHMM | 30 | 47 | 18 | - | – | |
| Phobius | 49 | 54 | 6 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 55 | 76 | 22 | - | – | |
| Phobius | 77 | 90 | 14 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 91 | 113 | 23 | - | – | |
| Phobius | 114 | 233 | 120 | - | – | |
| Phobius | 234 | 256 | 23 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 257 | 261 | 5 | - | – | |
| Phobius | 262 | 281 | 20 | - | – | |
| TMHMM | 263 | 285 | 23 | - | – | |
| Phobius | 282 | 292 | 11 | - | – | |
| TMHMM | 292 | 314 | 23 | - | – | |
| Phobius | 293 | 311 | 19 | - | – | |
| Phobius | 312 | 330 | 19 | - | – | |
| TMHMM | 329 | 351 | 23 | - | – | |
| Phobius | 331 | 351 | 21 | - | – | |
| Phobius | 352 | 398 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0066300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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