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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0066700 |
| Transcript ID | LotjaGi1g1v0066700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase 3; TAIR: AT2G05790.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9ZU91|E133_ARATH Glucan endo-1,3-beta-glucosidase 3; TrEMBL-Plants: tr|I1JIJ8|I1JIJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0066700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9182045..9185244) extracted from Lotus japonicus Gifu genome v1.2.
AATGATTTAGTCAGATTCGTCCGATCACTTTATCTCTTATTTTTTTTCTCCACTACATTTCTAATTTTAGGAAGGTGTGT AAATATAATTTCATTCTAAAATCTAACTTCACAAACTTTTTGAGATAAGTAAAACTAGGTTCTTAACTCACTTATATGAA AATTATTAATCCACCGATTTAACTAAGGTTTCATTTATTAATTCTGCATCTTCATTCTACTTGGTCAGAGCAGAGCAGAG TGACGCACGCCATTACCAGGCACGAACGATGGTGGTCCTATAATTACTCACTCACTCGTCGCTTTGTTACCATCACAACC ACACCGTGGGTCCCATCATTTCCCCTTTCCTTCTTTACCCTTCACAACACAGACACACCACCTCGTTCCCTTCAATTCCC ACTTCATAGATAACAGAGCAGAGTAGAAAAGAAAACCTGTTCCTCACACACTCTCATTGCTCTGTTTCTGTGAGAAAAAA CAGAGCATCATGATGCAGATTCAGCACCACTTCACTCTCTTCACCATCTTGTTCCTCTGCCTCACTCTCCTCACATTCAC AGGCAATGCTCTCACCTCTCTTCTACTTCTTACATTTTTCTCACAATGTAGTGTATGTTTGGTTTTCAGTACGTTTGTTT GAAGCATTGGAATTCGAGATCACGATTTCCAACCAACTGAAAACCAAACATGCTCGTAGACACTTCAACTAACTTGCTTT GGTTTGTTTTACTCTGTTTCAGATGGTGGCTCCATCGGAGTGAACTACGGCCGCATCGCCAACAACCTCCCATCAGCAAC CAAGGTAGTCAACCTCCTCAAATCCCAAGGTCTCAACCGGGTCAAAGTCTACGACACCGACCCGGCTGTCCTCCGGGCCT TATCCGGCTCCGGGATCAAAGTCACCGTCGATCTCCCCAACCAGCAACTCTTCGCAGCAGCAAGAGCTCCCTCGTTTGCA CTCCAATGGGTCGAACGCAACGTCGCCGCTTACCACCCCCACACCCAAATCGAAGCCATCGCCGTCGGCAACGAAGTCTT CGTCGACCCACGCAACACCACAAAGTTCCTCGTCCCCGCCATGAGAAACATCCACCAAGCTCTTGTCAAACACAACCTCC ACCATGACATCAAGGTTTCCTCCCCCATTGCGCTCTCCGCTCTCGGAAACTCCTACCCCTCCTCATCCGGGTCGTTCCGA CCCGAACTGGTACAGTCCGTTTTCAAGCCCATGCTCGAGTTCCTCCGTGAAACTGGGTCCTATCTCATGGTAAACGTCTA CCCCTTCTTCGCGTACGAGTCCAACGCCGATGTCATCCCTCTCGACTACGCTCTTTTCCGGCAGAATCCGGGTGTTGCAG ATCCGGGTAACGGGTTGCGGTACTTCAACCTCTTCGACGCGCAAATCGACGCCGTCTTCGCCGCGCTCTCCGCCTTGAAA TTCAACGACGTCAACATCGTGGTTTCGGAGACAGGCTGGCCTTCAAAGGGAGACGAAAACGAGCTCGGCGCGAGCGCGGA GAACGCCGCCGCGTACAACGGCGGGCTCGTCCGGAAGATTTTGACGAACAGTGGGACCCCCATGAGGCCCAAAGCGGATC TCACCGTCTATCTATTCGCACTCTTCAATGAAAATCAAAAGCCCGGGCCCACCTCAGAGAGAAACTTTGGGCTTTTTTAC CCTGACCAGAAGAAAGTTTATGATATCCCATTAACCGTGGAGGGGTTAAAAAGTTACCACGACAAACCCTCGCCGGTGGG TGGCGGTGAAAAACAGCCGGTGCCGTCGCCGGCGCCGGTTTCCGGTGGGGTTTCTAAGAGTACTACTGGGAATAATTGGT GTGTGGCGAATCCTGATGCGGAGAAGGTTAAGCTGCAGGCGGCTCTAGATTTTGCTTGTGGTGAGGGTGGGGCTGATTGC CGTCCGATTCAGCCCGGTGCCACGTGTTACGATCCTAACTCGTTGGTGGCACACGCTTCGTTTGCGTTCAACAGTTATTA TCAGAAGAAGGCACGTGCTGGTGGTAGCTGCTATTTCGGGGGCACGTCCTACGTGGTCACGCAGGAGCCTAGTGAGTATT CTATAAAAACCCTTTCTTTCATTAGATTCTCTGATACTGCGTATTTTAGATAAGTTCTACATAGGGTTGCTAATGTGAGC GGGGTAGGAAAGTGGTGTAGGATACAGACATGTCACGTGATTGGGTTGACAACAGGGAATCTTTGATGATAGTGACGTGT CACAGTTTTATAGGGTAGATTGTGGTAAATGGGATGGGTATATCGGGTATTTCACTCTGAACGATGCCGTACATTTTTTG AACATAACAATGTGGTACATTGGTAGCTGGAATTGCCTTTTTATTATTGCAAAATGACAAAGGGTAAAGGGTAATTGTTG AATGCTGAAAATGTAGCAGTAGGTGAAAATTGGTACTCAAAAAGCTAGTCAATTAGTCAAAGATTGGGTTGTGTGATAAC ATTGGATTCTAGTATATTATGCAAGTAAACATTTTTGTTTGTTTGTTGAGTTAATTTCAATTCACAGTTTACATTGATGA CTAGGGATTGTTTAACAAGGAGTTGTTTTTTGGTGTGCAGAGTATGGTAGCTGTGAATTTCCTACTGGATACTGAAGTGG AGTGATACATATATGATATATCCTTCATGAGCATGATGATGATGAACCTGGATCTGGCTGATTTTGCTTTAGTGTAAAGT ACAAGAAGGCGGTTGGGAGTTTCTGGGAGAGGGAGGCTTGAAATAGTTGTTAAGTTATTTGCTGATGATCACCTATGAAG ATTTTTTTGGGGATTGTGGATTGTAGTGGTTGAATAATATTTGACCTGTTTGGTGGGAATGGGGGTAAGCTTAAGTTAAT TAACTTTGTAGGCTAAATTGTATCTATGTTTTCACTTTGCTTTAGTAGACTTATTTGGACTCATGTTATTGCACTCCAGG TTTCATTACATTTGGAGTCTAGTTAATTAAGGCAATTTTTTTTGTCTTTCTATATATATGCACTAATTATTGGAGTATCT TTTACAATTGAGGCGCAAGATTATGTTTGCATCAGCTTTACTTTTCTAAGAATCAAATTTAGTACTAAGAACTCAGAAGC TTCTCACCAAAAATTGTTTGAGATTATGGTTTCATAATTGACTGTAGAATAATTTCTAAACATACAATTGAATAATGTTG
CDS sequence (LotjaGi1g1v0066700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAGATTCAGCACCACTTCACTCTCTTCACCATCTTGTTCCTCTGCCTCACTCTCCTCACATTCACAGATGGTGG CTCCATCGGAGTGAACTACGGCCGCATCGCCAACAACCTCCCATCAGCAACCAAGGTAGTCAACCTCCTCAAATCCCAAG GTCTCAACCGGGTCAAAGTCTACGACACCGACCCGGCTGTCCTCCGGGCCTTATCCGGCTCCGGGATCAAAGTCACCGTC GATCTCCCCAACCAGCAACTCTTCGCAGCAGCAAGAGCTCCCTCGTTTGCACTCCAATGGGTCGAACGCAACGTCGCCGC TTACCACCCCCACACCCAAATCGAAGCCATCGCCGTCGGCAACGAAGTCTTCGTCGACCCACGCAACACCACAAAGTTCC TCGTCCCCGCCATGAGAAACATCCACCAAGCTCTTGTCAAACACAACCTCCACCATGACATCAAGGTTTCCTCCCCCATT GCGCTCTCCGCTCTCGGAAACTCCTACCCCTCCTCATCCGGGTCGTTCCGACCCGAACTGGTACAGTCCGTTTTCAAGCC CATGCTCGAGTTCCTCCGTGAAACTGGGTCCTATCTCATGGTAAACGTCTACCCCTTCTTCGCGTACGAGTCCAACGCCG ATGTCATCCCTCTCGACTACGCTCTTTTCCGGCAGAATCCGGGTGTTGCAGATCCGGGTAACGGGTTGCGGTACTTCAAC CTCTTCGACGCGCAAATCGACGCCGTCTTCGCCGCGCTCTCCGCCTTGAAATTCAACGACGTCAACATCGTGGTTTCGGA GACAGGCTGGCCTTCAAAGGGAGACGAAAACGAGCTCGGCGCGAGCGCGGAGAACGCCGCCGCGTACAACGGCGGGCTCG TCCGGAAGATTTTGACGAACAGTGGGACCCCCATGAGGCCCAAAGCGGATCTCACCGTCTATCTATTCGCACTCTTCAAT GAAAATCAAAAGCCCGGGCCCACCTCAGAGAGAAACTTTGGGCTTTTTTACCCTGACCAGAAGAAAGTTTATGATATCCC ATTAACCGTGGAGGGGTTAAAAAGTTACCACGACAAACCCTCGCCGGTGGGTGGCGGTGAAAAACAGCCGGTGCCGTCGC CGGCGCCGGTTTCCGGTGGGGTTTCTAAGAGTACTACTGGGAATAATTGGTGTGTGGCGAATCCTGATGCGGAGAAGGTT AAGCTGCAGGCGGCTCTAGATTTTGCTTGTGGTGAGGGTGGGGCTGATTGCCGTCCGATTCAGCCCGGTGCCACGTGTTA CGATCCTAACTCGTTGGTGGCACACGCTTCGTTTGCGTTCAACAGTTATTATCAGAAGAAGGCACGTGCTGGTGGTAGCT GCTATTTCGGGGGCACGTCCTACGTGGTCACGCAGGAGCCTAAGTATGGTAGCTGTGAATTTCCTACTGGATACTGA
Protein sequence (LotjaGi1g1v0066700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQIQHHFTLFTILFLCLTLLTFTDGGSIGVNYGRIANNLPSATKVVNLLKSQGLNRVKVYDTDPAVLRALSGSGIKVTV DLPNQQLFAAARAPSFALQWVERNVAAYHPHTQIEAIAVGNEVFVDPRNTTKFLVPAMRNIHQALVKHNLHHDIKVSSPI ALSALGNSYPSSSGSFRPELVQSVFKPMLEFLRETGSYLMVNVYPFFAYESNADVIPLDYALFRQNPGVADPGNGLRYFN LFDAQIDAVFAALSALKFNDVNIVVSETGWPSKGDENELGASAENAAAYNGGLVRKILTNSGTPMRPKADLTVYLFALFN ENQKPGPTSERNFGLFYPDQKKVYDIPLTVEGLKSYHDKPSPVGGGEKQPVPSPAPVSGGVSKSTTGNNWCVANPDAEKV KLQAALDFACGEGGADCRPIQPGATCYDPNSLVAHASFAFNSYYQKKARAGGSCYFGGTSYVVTQEPKYGSCEFPTGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 10 | 472 | 463 | 1.9E-241 | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| PANTHER | 10 | 472 | 463 | 1.9E-241 | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 478 | 452 | - | – | |
| Pfam | 29 | 346 | 318 | 5.3E-94 | ||
| SUPERFAMILY | 29 | 346 | 318 | 4.02E-96 | ||
| Gene3D | 29 | 348 | 320 | 7.6E-130 | – | |
| ProSitePatterns | 261 | 274 | 14 | - | ||
| MobiDBLite | 356 | 383 | 28 | - | – | |
| SMART | 389 | 474 | 86 | 3.1E-48 | ||
| Pfam | 390 | 460 | 71 | 5.4E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0066700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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