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LotjaGi1g1v0068900.1

Overview

Field Value
Gene ID LotjaGi1g1v0068900
Transcript ID LotjaGi1g1v0068900.1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease Z family protein; TAIR: AT2G04530.1 Metallo-hydrolase/oxidoreductase superfamily protein; Swiss-Prot: sp|Q8L633|RNZC_ARATH Ribonuclease Z, chloroplastic; TrEMBL-Plants: tr|A0A151U1G9|A0A151U1G9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0068900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:9504625..9509534) extracted from Lotus japonicus Gifu genome v1.2.

CGACTGTGTTAGCAAGTTAACCTTATCCTCCACGAACACGCACATTACCTTTGTTTCAGACAACAACGTTGTTTCTAAAA CCCAGTTTAAACCCTTTTTCTCTTCTCCTTCTCTCTGCGTTCCAATTCACAGCTAAACTATGCAAATTTCTCTGACCAAT TCAGCATTCGAGACCCTCAAAATCTTCCCATTTCACCAACCAATTTTCCCTCAGAAACCACCGAACCACCACCAAGTTTC GTTGCCAACCCAACTCAATGCCGTTAAAGGGTCGGGCTATTTGTCCAATATCAGCAAAGCAATCGATTACGAAGAACAGT ACAAGCTAGCGAAGTCACAGGTTCATCGTAAGGGTTTGAACTTGGAAGGTTATTCCATTGAGGGTCTCTCAATTGGTGGG CAAGAGACATGTATCATAATCCATGAGTTCAAGTGTGCTTTTGATATTGGGAGGTGCCCAACTAGAGCTATTCACCAAAA CTTTGTGTTTATTACTCATGCTCATCTTGATCACATTGTAAGTTCCTATTCTTTTGCTACCCATTATGTTTTTTTTTTTT TTTTTTGAGTTTTGATGTTTCTTTTTGCTTTTTGGTTAGTATAAGGGGAAAAGTTAAGTTTAACATAATGTTATGTAAAT AATTTGTTGATAGAAAAGCTAAATTCACACTTCATTGATTCTATGGAGCTTGTTTCCTGCTTATCAAAAAATATGGAGCT TGTTTCCTGAAAAAAAATGACATCATTTTGTTAGGACTCAATTGCAAGGTAATGGACTTGAGACTCACATGTGGGGTTTA TAAGGCCTTGTGCTCTCCAACTACTACAGCTTTTGTGCTCTGGTTCTCCCAAGGTTCTTATCAATTGGTATCAGTGTCGT CCATCATGTCTCACTAAAGAGCGGCGCGGGTGGTGATGTCGTCATTGCATCATTCTCCCGTTTGACTAGTCAAAGGAGTG CACAGCCAACCAAGGTTCTTATGAATTTGTATCAGAGTCGTCCACCATGTCCGGCTAAAGAGCATTGCGGGTGGTGATGC TGTCATTGCAGCGTTCTCCCCTTTGACTAGTCAAAGAAGTGCACAGCCAGCCGGCTTTGGGTTGCGGAGCGTGGTGAGAT GTTAGGACCCAATTGCAAGGTATGGGACTTGAGTCCCATATTTGAAGTATGAGATTCTAATGTGGGGTTTATAATTCCTT GAGCTTTCCAACTAAATCAACTAGCTTTTGTGCTCTGGCTCTTATCACATTTATACTAGAATATAGGCTTATTTATGGTT GTAAGCTTTTTCTTTGATAGCATTATAAGAAATTTTACTTAATCTAATGTTGGACTTTCTTTTTAGTTAAAAATGTGAGT GTGGTTTCTTCTCCTAGTATTTTGTTAGGGAGTTTTACGCCTTCTATGTATTCTGGACATCATTGTGCTGTAAAATTTGC TTAAGCTGATGATATCATTGAATGATTTAGGGAGGCCTGCCAATGTATATAGCTAGCCGTGGTTTGTACAATTTGAAACC TGCCACTGTATTTGTGCCTCCTTGCATCAAAGAGGATGTTGAGAAGCTGCTTGATATTCACAGGACGCTGGGCCAAGTTG AATTGAATGTTGAATTGGTTGCTTTGGATGTGGGTATGTGTCATTTGTCTTTTCTTTAGTGATCTGAGTTATCATCTTCG AAATGATTTCTGAAGTTGCATTTCAGGGGAGACATATGAGATACGGAATAACCTTGTTGTTCGACCATTCAAAACACAAC ATGTTATACCCAGCCAGGTATGTTTCGACCAGTCAGTCATTTTGTAGCCCTTGTCTTTTTAACTGAAGGGTATATTATGA ATATCAAAATGTGAACTTACCTAACTACGTGTTCGAAAGCGTTCAAACCAAGAACTTGGCTAAAAAATGAACATGTTTCA GCTTTACAGTATCTGTGTGTAGTGTTGTCTTCTGATGCTCACATATTTTCGGTCTAGAGTTTTGTTAAGAAATGTCATCC TCATGTTTTGTCCAATGAACATACTTGTGTTTTTTTTTTTTTTTACTTTTGTTTATTTTGTATTTTTCTATACTCTGTAC AATCTTTTCTGATAATGCTGATATTATAATCTTGACTCTTGAATCTTATTGAAATATACATTACAAAATAAGAAAGTAGA GAAAGTATGTGAGATCCTAGTACCTGATTTTCTTACCTATGGCAATGATCTGGATATATGTAATGCTAAAGTTTGGAACT GTGCAAGGATGTTTTTGTACCTCTTAGAATAAGAACTATGCTAACCTGGTTAATTATGCAGGGTTATGTAGTCTATTCAA TCAGGAACAAGCTGAAGAAACAGTACACTCACCTGCAAGGGAAACAAATTGAAAAATTAAAGAAGTCAGGTGTTGAGGTT TGTAATATCTGGAACTCAATTCTGATTTGAATCTTCTTTGATCTTTACTTTTAATGAACTCTGGTATCTAGATTACAGAT ACAATATTATCTCCTGAGGTGGCCTTCACCGGGGATACAACATCAGATTTTATGCTTGATCCACTTAATGCTGATGCCTT GAGAGCGAAAGTACTTATAACTGAGGTATAGCACAATCTTTTAATGAAATGAGTAAAATTATTGATTCCAAGTTCAGCTT ACTTTGGAGTTGGCAGCATGATCAGATGAAATATTAAATATCCTCATAAACCGAGAATAGGAATAGATGTTCTGAAGTCA AATATGGGCCATTGTCTTAAAATATATGACTGCTTAAGAAGTTGTAGCACATAAAAGCTTTCAATTTTATGTCATTTCAT AAATTAAATGGATTTCTAATTGAACCTTTTCTCTCGAATATAAAGACTAGTCCTTAGGCTGATCAAATTTACCAATTGAC ATATTGTCATGGAAATTTCATTTTATTCTTTCATTTATGCTTGTTTATTGCGAAATCGAAAGGAAAGAAAAGAAAACGTG AAAAGGATGAGATCATAGTTTTTATTTTATGGTGTTCAGAGTTAATTAAAAATTTAGGGATTTCTTTATTTGAGGGATAT ACAGATTTTTTGTCCTATTTGTATTTTTTTGTTTGATTGGTCTGATTGTTCAAACTATTTTAACAGGCAACTTTCCTGGA CGATTCATACAGCATAGAGCATGCTCGCGAACATGGTCATACACATATATTTGAGGTAACATGACATCTTTCATTATAAG GCTACTACTTTATTGGAAGCTCGACAAACTCAATGCTTACAAAAATTAAATTTTACTGCCTTCATTCATCTGCCCTTACT CTTTTTCGTTGCTATTTTGCATGACTAAGTGTTAAGACCCAAGAGAGTGGGCCTGAGGCGATTGGGCTTGGGGCGTTTGA GCCTGGGTGATCCTAGGTTGGTGTTATCTGTTACTAGGTTAATGGGCCTGTGTGGCTGTGTCTATTTTTAGTTTTATCTT TTCTATCTTTTAGTCTGTTCTATTATTTGAGTTGGGTCTACGTTGGGCCAGGGTCATTTGCTTGGTGGGGTTAGTTTATT ATAAATAGGAGTACTTAACTTAGGTTAGAGGAGGATTTGATTATTGAGTTTGTAAAAGGTTTATACCTTTGGAAGGGATT TCCCTTGTTAAGGTTTTCCTTCTTGGGTTCTATTTTCCAGAATTTAATTCAGAAAATTACATCAACAACCCTGTTTGGTT GTTAGGGGTTTCCAACCCTAACACTAAGGTTTCTGCATTTAATTTATAGCTATATGATAATCTTTTTTTATTACCAACAT CTTATTTAGGTCATGTCAACTGTCAAGTAATATATATTGCATTTATGTCTTGATCCCAATTCCCAGGCCATTCCAAGATA AAAACCTAGAACTTCTATCTGCTCTGACAAAATCACTCTGCTTATTCTAGTGATTGACTGTTCTCAAATAGATGAATCTA CTGCATATTTTATTGAGGAGATTCCTGATTAGTAAACTTGTGTTAACTATGTAGCTCATGGAAAATGCTCAGTGGATTCG CAACAAAACAGTTCTGTTGACTCATTTTTCATCAAGATACAATATTGAGGTAATCTTTCATAGTGGTTATGTGGACTTGC ATCCCCCAAGTGCTCATATCTGCTTGTGTACCATTTAGTGCATGCTTGGATCAACATTTTCGTAATTGATTTGGAATAAA ATTGATTATGGTTAAAGTGAGTCAAATTAAGTTGGAAGTGAATGGATTTATGTTTGGATACGTTTATGGGAAAAATGTTC TGTAGGGTAATGTGAAATCCAGTTATGAAATCCCCCAATTGATTATGTCCACCGCAGAAGCTAGTACTTCTCCGTAGAAT TGATTTTGGGACTAAAATCAATTCTAAGTCGATTACCAAATATCTATATAACCATCTAAAAGTGATTCTGGTCAATGAGA ATTGATTCTAAGGTTCCCAAATGTGGAAACAAGCACACATTAGATGCAATTCTCGAAACATTTGTGAATTATCTTGACCT TCCTCTTGGAGGGGCATATCCTCTTGTACCACCGCATTTAGATATGCCTTTTATGATAATGTTAAACTTCTGTGCCCCTT TTATTAAGTCAGTGAATAAAACAGATATTATATTCTTTCATCCTCAGGAAATTCGTCAAGCTGCATCAAAATTGCAGGCC AAGCTGTCTGCAAAAGTGGTTCCTCTTACTGAAGGCTTCAAATCAATGTACTCTTAAGTGTTCTGAGAAATATATTAGTT GTATCCCAGTTTCATAGCTTGTAAATTAGAGAGGTGTACTTACTTTTGTTTTTCCCCTTGTAATCTTACTATTAGTTCAT ATTAAACCAAAATTCTGCTAAAGAATTGAATTTGATAACTTAGCCCCATCAACAATTTAAACGCATTTTTATTCATATAT TTCTGACTAAGCAAACTTTCTCATCAAAAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0068900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAATTTCTCTGACCAATTCAGCATTCGAGACCCTCAAAATCTTCCCATTTCACCAACCAATTTTCCCTCAGAAACC ACCGAACCACCACCAAGTTTCGTTGCCAACCCAACTCAATGCCGTTAAAGGGTCGGGCTATTTGTCCAATATCAGCAAAG CAATCGATTACGAAGAACAGTACAAGCTAGCGAAGTCACAGGTTCATCGTAAGGGTTTGAACTTGGAAGGTTATTCCATT GAGGGTCTCTCAATTGGTGGGCAAGAGACATGTATCATAATCCATGAGTTCAAGTGTGCTTTTGATATTGGGAGGTGCCC AACTAGAGCTATTCACCAAAACTTTGTGTTTATTACTCATGCTCATCTTGATCACATTGGAGGCCTGCCAATGTATATAG CTAGCCGTGGTTTGTACAATTTGAAACCTGCCACTGTATTTGTGCCTCCTTGCATCAAAGAGGATGTTGAGAAGCTGCTT GATATTCACAGGACGCTGGGCCAAGTTGAATTGAATGTTGAATTGGTTGCTTTGGATGTGGGGGAGACATATGAGATACG GAATAACCTTGTTGTTCGACCATTCAAAACACAACATGTTATACCCAGCCAGGGTTATGTAGTCTATTCAATCAGGAACA AGCTGAAGAAACAGTACACTCACCTGCAAGGGAAACAAATTGAAAAATTAAAGAAGTCAGGTGTTGAGATTACAGATACA ATATTATCTCCTGAGGTGGCCTTCACCGGGGATACAACATCAGATTTTATGCTTGATCCACTTAATGCTGATGCCTTGAG AGCGAAAGTACTTATAACTGAGGCAACTTTCCTGGACGATTCATACAGCATAGAGCATGCTCGCGAACATGGTCATACAC ATATATTTGAGCTCATGGAAAATGCTCAGTGGATTCGCAACAAAACAGTTCTGTTGACTCATTTTTCATCAAGATACAAT ATTGAGGAAATTCGTCAAGCTGCATCAAAATTGCAGGCCAAGCTGTCTGCAAAAGTGGTTCCTCTTACTGAAGGCTTCAA ATCAATGTACTCTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0068900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQISLTNSAFETLKIFPFHQPIFPQKPPNHHQVSLPTQLNAVKGSGYLSNISKAIDYEEQYKLAKSQVHRKGLNLEGYSI EGLSIGGQETCIIIHEFKCAFDIGRCPTRAIHQNFVFITHAHLDHIGGLPMYIASRGLYNLKPATVFVPPCIKEDVEKLL DIHRTLGQVELNVELVALDVGETYEIRNNLVVRPFKTQHVIPSQGYVVYSIRNKLKKQYTHLQGKQIEKLKKSGVEITDT ILSPEVAFTGDTTSDFMLDPLNADALRAKVLITEATFLDDSYSIEHAREHGHTHIFELMENAQWIRNKTVLLTHFSSRYN IEEIRQAASKLQAKLSAKVVPLTEGFKSMYS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46504
24 351 328 6.8E-191 –
PANTHER
PTHR46504:SF1
24 351 328 6.8E-191 –
Gene3D
G3DSA:3.60.15.10
78 349 272 1.2E-54
IPR036866
CDD
cd16272
83 275 193 4.11916E-32 –
SUPERFAMILY
SSF56281
102 331 230 6.93E-38
IPR036866
Pfam
PF12706
114 315 202 9.0E-15
IPR001279

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0068900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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