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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0072400 |
| Transcript ID | LotjaGi1g1v0072400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-soluble NSF attachment protein; TAIR: AT3G56190.1 alpha-soluble NSF attachment protein 2; Swiss-Prot: sp|P93798|SNAA_VITVI Alpha-soluble NSF attachment protein; TrEMBL-Plants: tr|I1M7N9|I1M7N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0072400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10173493..10177021) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCGATCAGTTAGCTAAGGCGGAGGATTTCTTGAACAAGGCGGAGAAGAAGCTCAGCGGTTGGGGTTTGTTTGGCTC CAAATTTGAGGATGCTGCTGAGCTTTTCGATAAATCGGCTAATTCCTTCAAGCTCGCCAAATCATGTAATGTTTTCTTCA ATTCATTGATCAAATTGCGTTTTGTATGAGGTTAATTGTGAATTTGTGACCATCGTTGAATGTAGTTGTTGTTGTTGGAT GAGGTTATGGGGATGAATTTGATAATTTGTTTTTAGGTTTTGTGAAATTGTGTTTGGATTATTATAGCTTTTGAATTTTG ATTGTGATGAATGATCATGATGGTGAATTGGTGATGATGATGATGATATTTCAGGGGATAAAGCAGGATCAACCTACATC AAGTTGGCGAATTGTCATTTAAAGGTGACTCCTTTTTTTCTGGGGGGATTTTTTATTTTTTTTTTGGTTTCTCTCTCTCT TTTTCCTAACCCTGTAATGGTGTCTTTTGATTCTAGTTGGAAAGCAAGCATGAAGCTGCTCAAGCTTTTGTTGATGCTGC ACATTGCTATAAAAAAACCAATATAAATGGTATGTATATATGTATTACTATCGGTGTTGCTACTCCGCTATTTTCCGCTT TAAGAGGCTGGAAATAGCGGATTTTTGGCTTACCACTGTAGTCTGCGATCTGCGATTAACAACACTGTTACTATCCATGC ACCATGCATGTATGTGTCTGGGTATAAGTATATGCTTATTTACATGCACTAGGATTCATTTCTGGTAATATGCTATGCAC TTGGGCTGATAAGTGATTGATGGATGGTGTGAAATGTGAATTCATAACTTGTTGATTATTGTTTTGCCATCTTTGTTCTT TCACTCGTTTTTGAATTCTGATTACTGCTCTCAATGGTCCTAGTGCCTCCTTGAAGCGAGGTCAATTCCTTGTGGTCTTA GTGGTTTTATGTGTAAGTTATAATCCAAATCATATTCCTTTGTCCATGATCAGACATCAGATAATATTAAAAAACTTTTT TGTCTTGTTATTCAAGATTTCTGTCTGTAAAAATCAGATAAGTAGTATGGGTCCGTACCTTCATGTAGTCTAAAATTAAG TAGTATATATGTGTAAATAGTTGAAATCTAGGAAGCACCAACACTTTGAAAGAGTAGCAGTGTCGTGTTGTATCCATGCT GCGCACTCCACAGACACTTCTACTTGTATTTTACGATTTTTCCTACTTCTTTTGAACTTTTATGCCAATACAGATGGAAA TGCCACAAGAATTTGGTAAATAATAGCATTTTATTATGTCCATCACTCGTGCTAGCTTTTAGATATTAATTCTCTCTTTG GATTTGAAAGGAATTTGTATTTTTATATTAATTTCATACTAATTGTGTCCATTGTATTACGGAGGTGTCATGTCCTATAA TTTTCAGCATTTATCGTGTTCCTGTGTCCATGTCGTGTCGTATTTGTGTTACTTGCTTTTTAGGTTGAAATCCATCAGCC TTTTTTTATGGTGGTTATATGCTTACCACTTTTAAAGTGGAATTGATTATAAATCCAGGAAGCATGTGGTAGCATGCTAT CTTTTGCATTAAGATGAAGACAATAGAACTTTTGATATTGAGCTTCTTTTTTCCCTGTTAATGCAGAGGCTGTGTCTTGT TTAGACCAAGCTGTAGATAATTTCTGTGAAATTGGAAGAATCTCTATGGCTGCTAGATATTTGAAGGTATATATCACTAT AACTTCACTTTTTTTCTTAGTCTGATCGGTTAAATTAAATTTCTCGGATTACACGCTATTCTTCTTGGCCATCTTATCCT TTCTGAGGCATTCTGAGTACAGGAATCTCAATAAAACATGTCAAAATTGAGTTTTACTTTTGTGTACGCAGGAAATTGCT GACTTATATGAGTCCGAGCAGAATATTGCACAGGCCATTGTTTACTATGAAAAATCAGCTGATTTTTATGAAAGTGAAGA AGTGAACACTTCTGCGAACCAGTGCAAGCAAAAAGTTGCTCAGTTTGCTGCTCAGCTTGAACAGTAAGATTTTTCTATTT TCTGCTTCTTCCCTTTTTTGTCACTGTGAAGGCCTCAATGATAGTGCTTGAACATGGTTTTCTTCTCTCTATGTTGTTTC CTTACTAGTTTGATATATAATCTTAACAGAACAATAACATTTCATATGGTGTTAAAAGCATTAGATGCTTGCTGCATTTC ATCTTATTCATATGTTGAAGGATATGGTGTTTTTAAATTAAAGCAGGAACTGCTAGAATAATGTCAAGAAAGAAATAATT TATTGCAGAAAAAAACTTTATCATAGCATTCCCTTTATGGTAAAATGAATGTGAACTGTTAACATTTTTATAATTGTCCA GATATCAGAAGTCAATTGTGATTTATGAAGATATAGCTCGCCAGTCTCTCAACAACAATTTGCTGAAGTATGGAGTTAAA GGACACCTTCTTAATGCCGGCATTTGCCAACTTTGTAAAGGGGATCATATTGCTATTACCAATGCATTAGAGCGATATCA GGTCTAGTGTCTTTTCTAGAATTTACATCTCGAGACTGTGATCATTGTCAGTTACTAAATTTCTTGGCTGTGTATTTGTT TTTGCAGGAACTGGATCCAACATTTTCAGGAACACGTGAATATAGACTTTTGGCGGTATGTTTCAAGCTGTGGAATTTCA TTATAAAACACAACATGGGGACTTTTCAATAACTGCCTCCTCTATTATTATGCTCTTATTTGCATTTGATATTTATTCTA GCATATAATTATAGCATTATCCGATTCTGTATTCAGATATTTGCCAGATGATGTGCTAACTTTTAATACAAAAAATGGCA GGATATTGCTGCTGCTGTTGATGAAGAAGATCTTGAAAAGTTTACTGTTGTTCTCAAGGAGTTTGATAGCATGACTCCTC TGGTAAGCTCCAAATTATTGAAGAACGAGACAATCTTTAGATCTGTATTCTTATAGCCGAATACACATTATAATTGAATT GCCCAATTTACTTCAATTTAATATTATGTTTTCACTCATTTGTATCTGCTTCAAATTTCCCCTTGAAAAATGTGTAAACC TTTTAATTTAATTTCTAAGAGAGATACGTAGCAGGAGACTACTTTTAACTAGTTCATAACTTTCTCTCCCTTTCTAATTT GCTCAAATTCTATAATTGTGAAATATATAGTGATTGTAAAATATGGATCAGACATTTCATCAAATTCTGCAGTTTTATTT TGCGAAAAGAGATCTAGGAAAACTGAGTATCAATATTTTTGTCTTTGTAAATATGTAGAACTGTTGTGGCATGAACTCCT TGTTCCTGTCATTCCTCTTTTGCATTCCATAAATAGTTCTACTCTCAATATTTCATTCACATTGTCTATGCCCATGAATA TTGTTCAGGACTCTTGGAAGACAACACTTCTCTTGCGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTTGAGGAGGATGAT CTTACATGA
CDS sequence (LotjaGi1g1v0072400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGATCAGTTAGCTAAGGCGGAGGATTTCTTGAACAAGGCGGAGAAGAAGCTCAGCGGTTGGGGTTTGTTTGGCTC CAAATTTGAGGATGCTGCTGAGCTTTTCGATAAATCGGCTAATTCCTTCAAGCTCGCCAAATCATGGGATAAAGCAGGAT CAACCTACATCAAGTTGGCGAATTGTCATTTAAAGTTGGAAAGCAAGCATGAAGCTGCTCAAGCTTTTGTTGATGCTGCA CATTGCTATAAAAAAACCAATATAAATGAGGCTGTGTCTTGTTTAGACCAAGCTGTAGATAATTTCTGTGAAATTGGAAG AATCTCTATGGCTGCTAGATATTTGAAGGAAATTGCTGACTTATATGAGTCCGAGCAGAATATTGCACAGGCCATTGTTT ACTATGAAAAATCAGCTGATTTTTATGAAAGTGAAGAAGTGAACACTTCTGCGAACCAGTGCAAGCAAAAAGTTGCTCAG TTTGCTGCTCAGCTTGAACAATATCAGAAGTCAATTGTGATTTATGAAGATATAGCTCGCCAGTCTCTCAACAACAATTT GCTGAAGTATGGAGTTAAAGGACACCTTCTTAATGCCGGCATTTGCCAACTTTGTAAAGGGGATCATATTGCTATTACCA ATGCATTAGAGCGATATCAGGACTCTTGGAAGACAACACTTCTCTTGCGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTT GAGGAGGATGATCTTACATGA
Protein sequence (LotjaGi1g1v0072400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDQLAKAEDFLNKAEKKLSGWGLFGSKFEDAAELFDKSANSFKLAKSWDKAGSTYIKLANCHLKLESKHEAAQAFVDAA HCYKKTNINEAVSCLDQAVDNFCEIGRISMAARYLKEIADLYESEQNIAQAIVYYEKSADFYESEEVNTSANQCKQKVAQ FAAQLEQYQKSIVIYEDIARQSLNNNLLKYGVKGHLLNAGICQLCKGDHIAITNALERYQDSWKTTLLLRVKEKLKAKEL EEDDLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 221 | 221 | 1.4E-146 | ||
| PANTHER | 1 | 221 | 221 | 1.4E-146 | – | |
| Gene3D | 5 | 222 | 218 | 1.4E-75 | ||
| SUPERFAMILY | 7 | 237 | 231 | 1.46E-52 | ||
| CDD | 7 | 235 | 229 | 5.59376E-91 | ||
| Pfam | 7 | 221 | 215 | 1.6E-82 | – | |
| PRINTS | 28 | 47 | 20 | 4.3E-25 | ||
| PRINTS | 91 | 108 | 18 | 4.3E-25 | ||
| Coils | 151 | 171 | 21 | - | – | |
| PRINTS | 152 | 175 | 24 | 4.3E-25 | ||
| PRINTS | 183 | 202 | 20 | 4.3E-25 | ||
| PANTHER | 221 | 246 | 26 | 1.4E-146 | ||
| PANTHER | 221 | 246 | 26 | 1.4E-146 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi1g1v0072400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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