Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0072500 |
| Transcript ID | LotjaGi1g1v0072500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant cadmium resistance protein; TAIR: AT3G10980.1 PLAC8 family protein; Swiss-Prot: sp|Q8S8T8|PCR10_ARATH Protein PLANT CADMIUM RESISTANCE 10; TrEMBL-Plants: tr|I1JIC0|I1JIC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0072500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10183914..10187120) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAGGTGGTGGGTAGGACCCGTTATTCTCTTCTACAAGAACAAGATTCTAGTTCTAGATAAATAATTGAATAATTGA ATACTACTATCAATTTTTTCCATTTTTCTTCTTTCTTGTTGTCCCTTGTTGCTAGAAGAAGAAAAATATATATAATCTTT CCACCCACCCAATGAAATTTCAACCTGTCCCTTCGTTTTCTGTTGGCAAGTGGCATTAAGCAACCTGTGTTTGACCATTC CATTTGTTTAGCCTCCGAAGTTTGCAAAGTACCATTCTTCTCTTGCCAGCTCCGAATGTTCCCACACGATTGTCTTGTTC TTACCTTGTGAGTTTTGCAGAGAATATCACTCTTACTTGGATTCAACGCCTTCTTCATCTTTTGTCGCCTAATAGGTATG TTGTTTTATGTTCTGATTTTGGGTTTTGTCTTTTGAGTTATGTTCTCATTTTAATTCTGTAAATTTTGGATTTTTAATTG ATTAGAAGCTTATTTATCATGATCTGTTTAATGGGTCATTGTCATTTGTATCAAGTTTTAATCTTTTTGATTTTTCATTG GATGCCATCTTTGTTCTTGTGGATTCACCATAAATTTGTTCTGGATTTGAATTTGAATACCTAGAGGAACTTTTTGTGTT TTTTTTTTCCTTGCAGTGTTTGTTCTGTGTGTCCTTACCACTGATTGTAAGGTTCTGATTTTCATATCAGAATGGTTTCT GTTGATAATGGTAAGGATGAGATTGAGGAATGTAGTAATGGAAGTAAAGTGAAGGAGTTAAGCCTAGATGTTTCGATGTC TCGAAGAACAATGCTAGACAGTGAAAACTCTCAGAGGAAGTACCAGGGTACCGCGAGTTCTATTCCTGATAGGCTCAAGT TCTTCAAATTTGGTTCTGCATCTGCGAAATTCAAGCGGATTGCTTCCGATAGGGACCAGATTTCACAATTGGTGCCTTCT CCGAGTTCGCGTAGCATAAGAGAACGCTTCAGTGGCATGTTTTCTAAGAAACTTGACTGGGGTTCAATCAAGAAGATGTG CAGAGAATGGATTAGGGATCCGATGAACATGGCCCTTTTCGCGTGGATCCTCTGTGTCGCTGTTTCGGGTGCGATTCTGT TCCTTGTAATGACTGGCATGTTGAATGCGGTGCTGACGAAGAAGTCCCAAAGGAACGCGTGGTTTGAAGTGAACAATCAA ATACTGAATGCGCTGTTTACGCTAATGTGTTTATACCAGCATCCGAAAAGGATCTACCACTTTGTTCTTCTGTGCAGATG GGGTCCAAAAGATATCCCCAGACTTAGAAAGGTGTACTGCAAAAATGGAACTTATAAGCCCCATGAATGGGCACACATGA TGGCAGTGATCATCCTCCTTAATGTGAACTGTTTTGCGCAATATGCACTTTGTGGTCTAAACTTGGGGTATAAAAGATCT CAGCGCCCGGCCATAGGAGTTGGAATATGCGTATCTTTTTCAATTGGTGCACCTGCAATTGCTGGTCTGTATAGCATTCT TAGCCCATTAGGTAAAGATTATGATTCTGAGATGGATGAAGAGGCACAGGTTCATATTCCGGATGCTCAAAAGCTGAGAG TGACACCATTTGAGAAGAAGTATTCATTTTCATCCAGAGATCAGCGAAGGATTATTGAAAATAGACCAAAGTGGAGTGGA GGGATACTCGACCTTTGGAACGATATCTCTGAAGCGTATCTCTCGCTTTTCTGTACTTTTTGCGTCTTCGGTTGGAACAT GGAGAGACTCGGCTTTGGAAACATGTTTGTTCACATTGCCACTTTCATGCTGTTCTGTATGGCTCCCTTTTGGATTTTTA TCTTGGCTGCTGTTAATATTGAGGATGACACCGTTAGGCAGGCTCTAGTAGGTGTTGGAATCATTCTATGCTTTTTCGGT ATGCTTTACGGTGGCTTTTGGAGGATCCGGATGAGAAATAGGTTCAATCTGCCTTCTTATGACTTCTGCTGTGGCAAGCC TTCAGCTTCTGATTGCACGCTTTGGCTATTCTGTTGCTGGTGCGCTCTCGCTCAAGAAGTGCGGACAGCGAATTCCTATG ATATCGTAGAAGATAAATTCTACAAGAAAGGAATCTATGCGGATGACCAACCGCAAATTTCACCTTTGCCTCGTGAAGAT GTGGCATCAACCAAATCTGGCACAAGTGGCACAAGTTCTCCCCTGGGTTTCAACTCTTCTCCCTCTAGGTTCAAACCATC TAGTCCTCTAAGCAGTCCCTTTAAGGGACGTTATAATCCAGATAGGCCATTATCTTCAGTAACAGAAGAGGTTCCGGAAA AGGCGAAAGATGGAGTAATGAACCCACCAACTCCACCATCAATACATAGAGAATCTCCTTAGTCCCTGAAGATCAAAATC AGGGATCTTTTCTGTTTGCGATTTGTATATACGGCATAGTCCATTAAGTTTTGGGTTCAATGCTTCTTTATTCATTGTTT TGCTCTCTCAGTATCTTGCACTCATTTGTATCACCCATTTAATTCAGGAAGCAGATTTTAAATGTTGATCTTGATCATCA ACTTTGTTATGTAATTGAGTAGATGTCTGTGTGAAACCAAGCTCCTTTCTTTCTTTTTTGAGGTTTTCTTTATATATTCC CCCTATATGAAATGCACTTAAGCAACAGATGTTGATTGTGGAAGATTGTAATTTACATTCTTAACCTCTATTCCTTCTTG TGAGAGTAAAGCTTATGATTTTGGATAGGAACAAGGTTTTGTTTTCCAACTTGTCTTGTATGTACCAAATGACTTGTTGA GCTGTAAAGTTTCCCTATTGATCTCAAGGCACTGACATAGGCTTTGATGAAATGCTTGTACAATATTCCTTGTTCAATTC AGGATGCAATGCAAATCGTTTGTATTAGCTGTAAGAATAGTACATGCAGGAATGTGTTGATTTGCTGAGGTATTATCAAT CTTCTGGTCAATGGCTAGTTAATCATTTATTATTTTACATGTTTTAGTGAAGGAATAGGGAACTGAAATATTTGTGCTCA TTCATTGAACATGCTCAGGCATAGCCCCTTATTCTGAAGTTAAACATGCTCTGAGTTATTGAACAAAAAAATGCTGAGTT CCTGTGAAACCAGTACTGGAATCAAACTGAGGTGTCCTTAAATTTCGTTTTCTCCTGATCTAATATCCCTCTTATGCTGC ATTCAAG
CDS sequence (LotjaGi1g1v0072500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCTGTTGATAATGGTAAGGATGAGATTGAGGAATGTAGTAATGGAAGTAAAGTGAAGGAGTTAAGCCTAGATGT TTCGATGTCTCGAAGAACAATGCTAGACAGTGAAAACTCTCAGAGGAAGTACCAGGGTACCGCGAGTTCTATTCCTGATA GGCTCAAGTTCTTCAAATTTGGTTCTGCATCTGCGAAATTCAAGCGGATTGCTTCCGATAGGGACCAGATTTCACAATTG GTGCCTTCTCCGAGTTCGCGTAGCATAAGAGAACGCTTCAGTGGCATGTTTTCTAAGAAACTTGACTGGGGTTCAATCAA GAAGATGTGCAGAGAATGGATTAGGGATCCGATGAACATGGCCCTTTTCGCGTGGATCCTCTGTGTCGCTGTTTCGGGTG CGATTCTGTTCCTTGTAATGACTGGCATGTTGAATGCGGTGCTGACGAAGAAGTCCCAAAGGAACGCGTGGTTTGAAGTG AACAATCAAATACTGAATGCGCTGTTTACGCTAATGTGTTTATACCAGCATCCGAAAAGGATCTACCACTTTGTTCTTCT GTGCAGATGGGGTCCAAAAGATATCCCCAGACTTAGAAAGGTGTACTGCAAAAATGGAACTTATAAGCCCCATGAATGGG CACACATGATGGCAGTGATCATCCTCCTTAATGTGAACTGTTTTGCGCAATATGCACTTTGTGGTCTAAACTTGGGGTAT AAAAGATCTCAGCGCCCGGCCATAGGAGTTGGAATATGCGTATCTTTTTCAATTGGTGCACCTGCAATTGCTGGTCTGTA TAGCATTCTTAGCCCATTAGGTAAAGATTATGATTCTGAGATGGATGAAGAGGCACAGGTTCATATTCCGGATGCTCAAA AGCTGAGAGTGACACCATTTGAGAAGAAGTATTCATTTTCATCCAGAGATCAGCGAAGGATTATTGAAAATAGACCAAAG TGGAGTGGAGGGATACTCGACCTTTGGAACGATATCTCTGAAGCGTATCTCTCGCTTTTCTGTACTTTTTGCGTCTTCGG TTGGAACATGGAGAGACTCGGCTTTGGAAACATGTTTGTTCACATTGCCACTTTCATGCTGTTCTGTATGGCTCCCTTTT GGATTTTTATCTTGGCTGCTGTTAATATTGAGGATGACACCGTTAGGCAGGCTCTAGTAGGTGTTGGAATCATTCTATGC TTTTTCGGTATGCTTTACGGTGGCTTTTGGAGGATCCGGATGAGAAATAGGTTCAATCTGCCTTCTTATGACTTCTGCTG TGGCAAGCCTTCAGCTTCTGATTGCACGCTTTGGCTATTCTGTTGCTGGTGCGCTCTCGCTCAAGAAGTGCGGACAGCGA ATTCCTATGATATCGTAGAAGATAAATTCTACAAGAAAGGAATCTATGCGGATGACCAACCGCAAATTTCACCTTTGCCT CGTGAAGATGTGGCATCAACCAAATCTGGCACAAGTGGCACAAGTTCTCCCCTGGGTTTCAACTCTTCTCCCTCTAGGTT CAAACCATCTAGTCCTCTAAGCAGTCCCTTTAAGGGACGTTATAATCCAGATAGGCCATTATCTTCAGTAACAGAAGAGG TTCCGGAAAAGGCGAAAGATGGAGTAATGAACCCACCAACTCCACCATCAATACATAGAGAATCTCCTTAG
Protein sequence (LotjaGi1g1v0072500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSVDNGKDEIEECSNGSKVKELSLDVSMSRRTMLDSENSQRKYQGTASSIPDRLKFFKFGSASAKFKRIASDRDQISQL VPSPSSRSIRERFSGMFSKKLDWGSIKKMCREWIRDPMNMALFAWILCVAVSGAILFLVMTGMLNAVLTKKSQRNAWFEV NNQILNALFTLMCLYQHPKRIYHFVLLCRWGPKDIPRLRKVYCKNGTYKPHEWAHMMAVIILLNVNCFAQYALCGLNLGY KRSQRPAIGVGICVSFSIGAPAIAGLYSILSPLGKDYDSEMDEEAQVHIPDAQKLRVTPFEKKYSFSSRDQRRIIENRPK WSGGILDLWNDISEAYLSLFCTFCVFGWNMERLGFGNMFVHIATFMLFCMAPFWIFILAAVNIEDDTVRQALVGVGIILC FFGMLYGGFWRIRMRNRFNLPSYDFCCGKPSASDCTLWLFCCWCALAQEVRTANSYDIVEDKFYKKGIYADDQPQISPLP REDVASTKSGTSGTSSPLGFNSSPSRFKPSSPLSSPFKGRYNPDRPLSSVTEEVPEKAKDGVMNPPTPPSIHRESP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 121 | 121 | - | – | |
| PANTHER | 4 | 553 | 550 | 1.2E-280 | – | |
| PANTHER | 4 | 553 | 550 | 1.2E-280 | – | |
| Pfam | 112 | 190 | 79 | 2.0E-28 | ||
| TMHMM | 121 | 143 | 23 | - | – | |
| Phobius | 122 | 148 | 27 | - | – | |
| Phobius | 149 | 159 | 11 | - | – | |
| Phobius | 160 | 177 | 18 | - | – | |
| Phobius | 178 | 212 | 35 | - | – | |
| Phobius | 213 | 236 | 24 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 237 | 247 | 11 | - | – | |
| TMHMM | 247 | 269 | 23 | - | – | |
| Phobius | 248 | 270 | 23 | - | – | |
| Phobius | 271 | 334 | 64 | - | – | |
| TIGRFAM | 320 | 454 | 135 | 2.2E-29 | ||
| Pfam | 321 | 451 | 131 | 1.9E-17 | ||
| TMHMM | 332 | 349 | 18 | - | – | |
| Phobius | 335 | 351 | 17 | - | – | |
| Phobius | 352 | 357 | 6 | - | – | |
| TMHMM | 356 | 378 | 23 | - | – | |
| Phobius | 358 | 379 | 22 | - | – | |
| Phobius | 380 | 390 | 11 | - | – | |
| TMHMM | 388 | 410 | 23 | - | – | |
| Phobius | 391 | 410 | 20 | - | – | |
| Phobius | 411 | 556 | 146 | - | – | |
| MobiDBLite | 474 | 556 | 83 | - | – | |
| MobiDBLite | 480 | 517 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0072500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…