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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0076100 |
| Transcript ID | LotjaGi1g1v0076100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT4G37260.1 myb domain protein 73; Swiss-Prot: sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44; TrEMBL-Plants: tr|I1JIG1|I1JIG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0076100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10965984..10967539) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACAGAGTTTATAGGAAAATCAAAAATGCGTTACTCGAATCAGTTAGATAAAAAGGTGTGGAAGTTATAACTTCCTT CATTATTAATCTTTCCATCTTCTCTCTTTCACCCACTCCATTCATCATAAACCCAACCTGTAAACTTCCACCTACCTAAG CCTAAACCGAAAACACCCAACTTCTATTTCGAATATCACAGATTGATTTGATTCATCTACAAACATTGCTTTCAAGGTTC ATTCAATTTTCAATCTTAGTTTTTCAACTTTCAATTACAGTTTGTTATTTAATTGTTATGCATTTTCATTTCATTCATTG GTGTTTTGTTTTTTCTTATATATATAAATATAAAATAGAACACCAAAACAGAGTGTGAAAATTTCTATTTCTATTTTCTC TGTGACAGGTTGAGGGTGTCAGTTACCATGATCGGCGGTGGAGATTCCAGCAACGGCGGTGGCGGCGGTGATCGCGATCG TGTGAAGGGCTCATGGAGTCCTCAAGAGGACGAGACGCTGATGAAGCTCGTCGGCCAGCACGGTCCTCGGAACTGGTCCG TCATCAGCGCCGGCATCCCTGGCCGATCCGGCAAGTCCTGCCGTCTCCGGTGGTGCAACCAGCTCAGCCCCGACGTGCAG CACCGCCCGTTTACCCCGACGGAGGACACGATCATCATCCAGGCGCACGCCGTTCACGGCAACAAATGGGCCACCATCTC GCGCCTCCTCCCCGGCCGCACTGACAACGCCATCAAGAACCACTGGAACTCGACGCTCCGCCGGCGACGCGGGGAGTCTT TGCCTCTGCCTCTGGCTTCACCTTCCCCGTCGCCGTCGCCTTCGCCGCCGCTGCCGTTCTCGATGGCGAAGCGTCCGCAC GGGTACGAGCTCCTCGACCGTTACGACGGTTTGATGGATCAGGGGTACCCGTTCAAGCGGCACTGCGTAGAGAAAGACGA TGAGGAGTCACGTGACGGGGTTGAGGAAGCGGAGACGATGACGGAGGAGGAGGTTTTGGCGAGTTCGGTTCCGACGTCGT TGAGTTTGTTTCCGATGGGGGAGAAGAAGATGGTGGCGGTTGCAGAGAAAGAGGAGAAGAAGATGGACATGCAGGAAGGG TTGATGAGGACGATGATGCAGCGCATGATAGCAGAAGAGGTTAGGGCTTACTTTGACAAGATGAGATTTGATCCAAGACT TCAAAAGTGAGAGAGAATGAATGAATGATGGTTTAGAAATGGAATAAAAAATTTGATGACATTCTTCTTGTGTTGAGTTT CTGATTTCATCATGTGTTATGTGGTTTCAGAGATTCTTCTTCTGGTATTTGACTTTTGATGATGATGATCTAGTTTTTAA TAATTGTTTCTGGATTGTAAATGTTGGATTTGTCAATGTTAAATGTAGCTGATGATAGATTAGAGTTAGTGCAGTGGGAA ATTTGGAAGTACATGTCTATAAGATAGAAGAAAAGAAAATGGTTCATAGAGCAACAAAGGGATTGACACTCCAAAAGAGA AAGATATAAAGCGAAAAGAGATAGATAATAGACGTG
CDS sequence (LotjaGi1g1v0076100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCGGCGGTGGAGATTCCAGCAACGGCGGTGGCGGCGGTGATCGCGATCGTGTGAAGGGCTCATGGAGTCCTCAAGA GGACGAGACGCTGATGAAGCTCGTCGGCCAGCACGGTCCTCGGAACTGGTCCGTCATCAGCGCCGGCATCCCTGGCCGAT CCGGCAAGTCCTGCCGTCTCCGGTGGTGCAACCAGCTCAGCCCCGACGTGCAGCACCGCCCGTTTACCCCGACGGAGGAC ACGATCATCATCCAGGCGCACGCCGTTCACGGCAACAAATGGGCCACCATCTCGCGCCTCCTCCCCGGCCGCACTGACAA CGCCATCAAGAACCACTGGAACTCGACGCTCCGCCGGCGACGCGGGGAGTCTTTGCCTCTGCCTCTGGCTTCACCTTCCC CGTCGCCGTCGCCTTCGCCGCCGCTGCCGTTCTCGATGGCGAAGCGTCCGCACGGGTACGAGCTCCTCGACCGTTACGAC GGTTTGATGGATCAGGGGTACCCGTTCAAGCGGCACTGCGTAGAGAAAGACGATGAGGAGTCACGTGACGGGGTTGAGGA AGCGGAGACGATGACGGAGGAGGAGGTTTTGGCGAGTTCGGTTCCGACGTCGTTGAGTTTGTTTCCGATGGGGGAGAAGA AGATGGTGGCGGTTGCAGAGAAAGAGGAGAAGAAGATGGACATGCAGGAAGGGTTGATGAGGACGATGATGCAGCGCATG ATAGCAGAAGAGGTTAGGGCTTACTTTGACAAGATGAGATTTGATCCAAGACTTCAAAAGTGA
Protein sequence (LotjaGi1g1v0076100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGGGDSSNGGGGGDRDRVKGSWSPQEDETLMKLVGQHGPRNWSVISAGIPGRSGKSCRLRWCNQLSPDVQHRPFTPTED TIIIQAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRGESLPLPLASPSPSPSPSPPLPFSMAKRPHGYELLDRYD GLMDQGYPFKRHCVEKDDEESRDGVEEAETMTEEEVLASSVPTSLSLFPMGEKKMVAVAEKEEKKMDMQEGLMRTMMQRM IAEEVRAYFDKMRFDPRLQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 12 | 230 | 219 | 1.2E-79 | ||
| PANTHER | 12 | 230 | 219 | 1.2E-79 | – | |
| ProSiteProfiles | 15 | 70 | 56 | 25.748 | ||
| SUPERFAMILY | 17 | 113 | 97 | 5.08E-30 | ||
| Gene3D | 19 | 72 | 54 | 1.1E-21 | – | |
| SMART | 19 | 68 | 50 | 2.2E-14 | ||
| Pfam | 20 | 65 | 46 | 1.1E-15 | ||
| CDD | 22 | 64 | 43 | 4.3917E-13 | ||
| SMART | 71 | 119 | 49 | 4.6E-14 | ||
| ProSiteProfiles | 71 | 121 | 51 | 21.114 | ||
| Pfam | 74 | 115 | 42 | 3.4E-14 | ||
| CDD | 74 | 117 | 44 | 6.54804E-11 | ||
| Gene3D | 74 | 128 | 55 | 2.9E-19 | – | |
| MobiDBLite | 124 | 146 | 23 | - | – | |
| MobiDBLite | 129 | 145 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0076100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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