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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0076700 |
| Transcript ID | LotjaGi1g1v0076700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT3G55990.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q9LY46|TBL29_ARATH Protein ESKIMO 1; TrEMBL-Plants: tr|V7B7G4|V7B7G4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0076700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11065638..11071146) extracted from Lotus japonicus Gifu genome v1.2.
CATATGGTAAGCTTAATTTCATAAATCCATGCAATAGTAGAGAGTACTTGAGAAATGAGAAAGGCCACCCTCCCTCTACC AATAGTATTTTCTGCTCTCTATAGTCTTAGAAAGACAAGTACATTTCACCAAACCCCAATTAAACAAACACAACCTACTA AAACTTGAATTCAACTCCTTTTCTTTCTCCCTAACCAAATGCCTCTCTCTGCTTTCTCTGCTATATTTCTACCTCTCTGT TTTCCTTCTCTGCTCAGTGAATCTTCTTCTGTTACCCAAAACTCTCTCTTCCTCCACCACCATGCACCCTTTTCGCCGCA AGGCCCCTCTCTTCAACTCAGAAGCAGTGGCTATGAAGGGCCGCAAGAACAGCAACCTCTCCATTTTCGTGGTGGTTTTC TCCATTTGTCTCTTTGGGGTGTTCATGTACAACGAGGATGTGAAATCAATAGCAGAGTTTCCATTTTCTTCAAGGCCTAA ATCTCAAGAAACAGCACAAGAAGTGGAGTCAAAACATGTTGTTGAGTCTGTTCAAGTGGATCCAAGAAGAGACATGGAAT TGGAAGATACTGTTGTTTTTGAAAAGGATGGTGAGAAAGAAGATGAAGATACCACCAAGAAAGGCACTGTGAGGGTCACT GTTTCCAAGAATTCAAGAGCTCAGCTTGAGAAGAAGAGCCAGGATGATGGTGATGAAGATTCTGATGAAACACAACAAGA GCGCGTAGAGTTGAAAACGGTGGTGGCCAAGGCAGAGGAGGAGGAGAAAGAGGAGAAGATTGAATTGCCAGAAGGGGAGG AAGAGAAAGAAGAGGAAGAAGAAGTGGAAGTGGTTGAGTTGCCACCAGAAGATTGTGACTTGTTTACAGGGGAGTGGGTT TTGGATAACATGACACACCCTTTGTACAAAGAAGATGAATGTGAATTCCTCACTTCACAAGTGACATGCATGAAGAATGG AAGAAGAGATTCCATGTACCAGAAATGGAAATGGCAGCCTAGAGATTGCTCTTTGCCTAAGTAAGCAATTTGGTTCTTTC AATTTCCATTTCTATAGCATGTCTAAATGCATCAGGTTCTCTTTTCTCGGAATCAATTCTGAAATCCAGAAGCTACCGAC CATAGCCTTCTCCGCGGAATTGATTCTGGTGGTAGAATCAATTGTAGAATTTTTTTCAAACATTTTCCTTTTTTAAATCC TCCCAATGTTTTTAAGAAAATTTGTTATTGATTGGAATTTTATGAAATTGTTAAGGTTCAAACCAAGACTCTTGTTTGAG AAGATCAGAGGGAAGAGGCTTTTGTTTGTTGGAGACTCACTGAATAGGAACCAGTGGGAATCAATGGTTTGTATGGTCCA GTCTGTGGCTCCTCCAGAACAAAAGACCTGGTACAAGAATGGTTCTTTTGCCATCTTCAAAATTGAGGTTTGTCTTCCTC CATTTTTTTTCCTGAATGTTCAAGTTTGATCATCATAATTCATTGTCATTTGCCATAACTATTAATTACATACATAACAT CAAGCTAGATTCGTAAAGCACTATTCATATGTACTAATTTGTAATGAGTAATGACCATATCTTAGTTTTATGGGTTAGTC TCTGTGTGAACAGTGAACATGCAATGAGAATCATTTTGCGCACCTATGGTGGACCACAGAATTTGATGACCAAATGGGGT TGTTTAAATATCAAGTTACCTCTTTATTTGGCATTAATCTGCAAGATCTGGCTTTTTAGTTAAGAAAGGACATATGATGT CAGGGAATAAAGTGTACATATGCAATATTGCTTAGGATGCACTCTTGTTGAGTGACTAAGTGCATCTTTCCAAACTTCAC TGAAATAGATTCTGAAGACGGAATCAATTTTAGTGAGAAGCTTCGGTGATTAGCTTTTGAGGTTATAGTATTGATTCTAA TGAAATAGTAGCTTCTTTGTTTAGCTTTTGTGTTCTGTTAGCCGTGTGCTGAGCTCTTATGAATTATGTTGTTTTTTTTA CACTCTTATGAATTATGTTGTTAAATGCTCTTTCTTTATGTACTCGGCTGATATTCAAACACTTGCGAACCGTTATCTAT GTGTAGGAGCCGGATCACATTACTACAACGGTGGAATTCTATTGGGCACCATTCCTTGTGGAGTCAAATTCAGATGATCC AGAAATGCACAGCATATTGAACCGTATAATCAATCCTGAATCAATTGAGAAACATGGTGAGAATTGGAAGAATGTGGACT ACCTGATCTTCAACACCTACATATGGTGGATGAACACTTTCAATATGAAAGTCTTGTAAGCAAAAGATCACTCTACTCCA TTTCTTTTCTCTTTAAATGTTTCTTATCTTTTAAGCAAATTCATGAAACTGACATGGTTTTGTGTGTGATGCAATCAATA GACGAGGGTCGTTTGATGAAGGGTCCACGGAGTACGATGAGATCCCAAGGCCAGTAGCATATGAGATAGTCCTCAGGACA TGGTCAAAATGGGTTGATGAGAATATTGACCCAAATCGAACCAAAGTTTTCTTCAGCAGCACGTCCCCTCTTCATATCAA GTAATTATTACCATACCTTTTAGTTTCTGCTTTTTTATTATTGAAAACTAATTTTGTGATCAACAAACAAACATTGATTT CATTATGTTAACGGTGATAGACACAATATGCCATATAGATAAAATTATCAAAAAAAAATGTCATAGATAAGGATATATAA ATAAAAGAGTTTAATGGTTGTACCCAATAATTTTACGCAGACGTCTAATAACTGAATACCACATATTCAAAAGCAGTTAT GTTCATTTTTATTTTAATTAAATTAAAAACATATTTTCTGATTTGGCAACATATCATTGGATGTATGTGTAAAAAATATT TACACTTTGAAACAAATGTGTTGCGTCATTGTGTTCTAACTTATCGTGCTACCTTCAATTTTATTTATATAATTAGTCAA ATTAAAAATAATTACAAATATAATATAAAATTTTATTAGGAATTTCTTCATTTTTTAAAAAACTTTCCAATTTATCTTTT AATCTTTTTTTAGTACATTGGAAAGATAAATTATTCCCTCCAAGGTTTGATCCTTGGACCTCCTCTACCAAACTCATATG CCTCATAACTCATACAACTTGAGTTATCATTCGGTGACTATCTTTAATCTTTAGTCTGGTTGAGAATTATTTATCATACT TCAGAATTAGTATGGATATAGAATTACAAGTAAAAAAACATCATAATTAATATTATTTTAAAAGAGGAACAATTTTTTTT CCTTTATCCGAACTTGATAAGAATGAAGGTTTATGAAGTCGTGTGAAATTGGTATGTAGATAAATATGGAGGATTATTTC GGCAAACAAAATCATTTATCTCACTTGCAATACTCAAAATGATCATGATTTTTAAACACCTGAAGAATAACAACATCTCA TATATACTTAATTTTTCTCTTCTATCTTCTCAACCTATCACGTCATAATATATATCATTTTCCTCTCTTCTTTTCCTTTT TCTTTCATCTAAAATGGGTTGAGCCAGAGTGTTACAATTGTGATTTTATTTGAACACTTACCTGTTTGTAATCAGTATGA ATACTTTTGCACATTGTCCTCTGAATTCAACATTTACAATTATCCATGTCATTTGTAGGAGTGAGGACTGGAACAACCCA GATGGTATAAAATGTGCAAAGGAAACCACTCCAGTTCTCAACATGTCAACTCCATTGGATGTAGGCACAGATCGTCGCCT TTTTGTCATTGCAAACAATTTAACACATTCAATGAAGGTGCCAGTGTACTTCATCAACATCACTACCTTATCAGAGTTTA GAAAAGATGCGCATACCTCTGTTTACACCATACGTCAAGGCAAAATGTTAACTCCAGAACAACAAGCTGACCCTGCTACT TATGCAGATTGTATACATTGGTGTTTACCAGGATTACCCGACACTTGGAATGAGTTCATTTATACACGTATCATATCTCA ATCTTGACCCACAACATATACATATCTTCACACAATACACTTATTTTTGCCCTTTACTTCGTTATTACTTCTCCTTTTAC CTTAAGAAGCAAGCCCTGTCTCTTTTTTTTTGTCTCTGTCAGTTTTTTGTAAGTCACTTCTTATTAGGCCTTTTTTAGGA CTTGGGCAATTTTTAAACCATTTACTTCATTATGTTTATTTGTTAAGCCAATTTAGGCGAGAATGGAAGGCACAGCAAGA ACATTAATTGTACAATGAATACTTGTTTCTTGAATGAAGAGAACAATAAAGCATCAAGGTTTTGTTCAGTTTATTTTCAG TGTTTTATTGCTTCAAGTTTAAAATAATTGCATTATATTACGTCTGGACATGTCACATGTGGAAACTAACAACTTAAATT GAGCAATGTACTTTCTATAGAAAAGGCATTTTAAATAACTGATTTCAGGCTTCTAAAAATATGAGACCAAATCAGAACAT TCCCATCATAAAAAATAACATGACTGAATATAAATACAACAGATTTTTACAATAATTTATAAGTACAAACACTTTGCCAG ATACAGTGATGTGAAGACTACTGCACATATGTATTTGTAAAATCAACAATTCAAAGCTGAGTACAATCATCTCAAACATC TATCTATCTCGCTAATAACATTGATATGAGTTCTTGGAAAACACAGACGCAACAAGGGAACTGAAGATGATGACATAAGC TTAGGTTTGACTCGATCTATAGCTAGCCTGATTACGGATGAAGCTGGTACGTCAAACCACTGAAGATAGCAAGAAAGAAG AATCGAACGTTTATCTTGGGATTCCCCATCAGGCCATTTTCCCAATTTCAAATATGTATGAAAATCATCCTTCAATTCCT GAGAGCAATTTAGGAGCTCTTCCACTTTCTTCCTAAGAGAACCAATGAACGCTGATTGTACAATACCGCCTTTTGGTGAA GATAATTTTCCGGACATCAATGCCTCGATATAAGTCAGCGAAAGCTGCAGGCAAATACAAATACATAAGTTAAGCAAATG TCAATAAAGGGTCAAATGTATGCACCCTTACCCCCTAGGCAGAATCTATGACTCGGTTTACAAACACTTCAAAATAATAA CACTTTTCATGTTGGCAACTTGGCATTCAGAGACACACTGAATAGTTTTAATTCTATTTTACAAACTTTTAGTTCCATTT ATTGAACTTCACATCAATATAAGAATACCAAAATAATTATATGAACAAAACAATGTATGGTTACTTTAGAAATATAATAA CAACTTAAGCTTGAGATAATTGGTTGTTTGACATGGTATCAGAGCCTCTATGACCAAAAGGTCTAGAGTTTGATCCTTGC ACCCCCCCCCCCCCGAATAAAATGTGGAATTTCAGCACATAGTAGGTGGGTATGTGCATTATCCACACTTCAAGCCCAAG TGGGCTCTTGCATGAGGGGGCGTGTTAGAAATATAATATAAAATCATTCATGTGGCTCTTACCCAACAG
CDS sequence (LotjaGi1g1v0076700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACCCTTTTCGCCGCAAGGCCCCTCTCTTCAACTCAGAAGCAGTGGCTATGAAGGGCCGCAAGAACAGCAACCTCTC CATTTTCGTGGTGGTTTTCTCCATTTGTCTCTTTGGGGTGTTCATGTACAACGAGGATGTGAAATCAATAGCAGAGTTTC CATTTTCTTCAAGGCCTAAATCTCAAGAAACAGCACAAGAAGTGGAGTCAAAACATGTTGTTGAGTCTGTTCAAGTGGAT CCAAGAAGAGACATGGAATTGGAAGATACTGTTGTTTTTGAAAAGGATGGTGAGAAAGAAGATGAAGATACCACCAAGAA AGGCACTGTGAGGGTCACTGTTTCCAAGAATTCAAGAGCTCAGCTTGAGAAGAAGAGCCAGGATGATGGTGATGAAGATT CTGATGAAACACAACAAGAGCGCGTAGAGTTGAAAACGGTGGTGGCCAAGGCAGAGGAGGAGGAGAAAGAGGAGAAGATT GAATTGCCAGAAGGGGAGGAAGAGAAAGAAGAGGAAGAAGAAGTGGAAGTGGTTGAGTTGCCACCAGAAGATTGTGACTT GTTTACAGGGGAGTGGGTTTTGGATAACATGACACACCCTTTGTACAAAGAAGATGAATGTGAATTCCTCACTTCACAAG TGACATGCATGAAGAATGGAAGAAGAGATTCCATGTACCAGAAATGGAAATGGCAGCCTAGAGATTGCTCTTTGCCTAAG TTCAAACCAAGACTCTTGTTTGAGAAGATCAGAGGGAAGAGGCTTTTGTTTGTTGGAGACTCACTGAATAGGAACCAGTG GGAATCAATGGTTTGTATGGTCCAGTCTGTGGCTCCTCCAGAACAAAAGACCTGGTACAAGAATGGTTCTTTTGCCATCT TCAAAATTGAGGAGCCGGATCACATTACTACAACGGTGGAATTCTATTGGGCACCATTCCTTGTGGAGTCAAATTCAGAT GATCCAGAAATGCACAGCATATTGAACCGTATAATCAATCCTGAATCAATTGAGAAACATGGTGAGAATTGGAAGAATGT GGACTACCTGATCTTCAACACCTACATATGGTGGATGAACACTTTCAATATGAAAGTCTTACGAGGGTCGTTTGATGAAG GGTCCACGGAGTACGATGAGATCCCAAGGCCAGTAGCATATGAGATAGTCCTCAGGACATGGTCAAAATGGGTTGATGAG AATATTGACCCAAATCGAACCAAAGTTTTCTTCAGCAGCACGTCCCCTCTTCATATCAAGAGTGAGGACTGGAACAACCC AGATGGTATAAAATGTGCAAAGGAAACCACTCCAGTTCTCAACATGTCAACTCCATTGGATGTAGGCACAGATCGTCGCC TTTTTGTCATTGCAAACAATTTAACACATTCAATGAAGGTGCCAGTGTACTTCATCAACATCACTACCTTATCAGAGTTT AGAAAAGATGCGCATACCTCTGTTTACACCATACGTCAAGGCAAAATGTTAACTCCAGAACAACAAGCTGACCCTGCTAC TTATGCAGATTGTATACATTGGTGTTTACCAGGATTACCCGACACTTGGAATGAGTTCATTTATACACGTATCATATCTC AATCTTGA
Protein sequence (LotjaGi1g1v0076700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHPFRRKAPLFNSEAVAMKGRKNSNLSIFVVVFSICLFGVFMYNEDVKSIAEFPFSSRPKSQETAQEVESKHVVESVQVD PRRDMELEDTVVFEKDGEKEDEDTTKKGTVRVTVSKNSRAQLEKKSQDDGDEDSDETQQERVELKTVVAKAEEEEKEEKI ELPEGEEEKEEEEEVEVVELPPEDCDLFTGEWVLDNMTHPLYKEDECEFLTSQVTCMKNGRRDSMYQKWKWQPRDCSLPK FKPRLLFEKIRGKRLLFVGDSLNRNQWESMVCMVQSVAPPEQKTWYKNGSFAIFKIEEPDHITTTVEFYWAPFLVESNSD DPEMHSILNRIINPESIEKHGENWKNVDYLIFNTYIWWMNTFNMKVLRGSFDEGSTEYDEIPRPVAYEIVLRTWSKWVDE NIDPNRTKVFFSSTSPLHIKSEDWNNPDGIKCAKETTPVLNMSTPLDVGTDRRLFVIANNLTHSMKVPVYFINITTLSEF RKDAHTSVYTIRQGKMLTPEQQADPATYADCIHWCLPGLPDTWNEFIYTRIISQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 12 | 534 | 523 | 2.8E-257 | ||
| PANTHER | 12 | 534 | 523 | 2.8E-257 | – | |
| TMHMM | 26 | 43 | 18 | - | – | |
| Phobius | 26 | 43 | 18 | - | – | |
| Phobius | 44 | 535 | 492 | - | – | |
| MobiDBLite | 64 | 109 | 46 | - | – | |
| MobiDBLite | 64 | 176 | 113 | - | – | |
| Coils | 134 | 168 | 35 | - | – | |
| MobiDBLite | 138 | 157 | 20 | - | – | |
| MobiDBLite | 158 | 176 | 19 | - | – | |
| Pfam | 184 | 236 | 53 | 9.1E-22 | ||
| Pfam | 238 | 529 | 292 | 2.3E-88 | ||
| ProSiteProfiles | 243 | 290 | 48 | 6.76 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0076700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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