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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0077000 |
| Transcript ID | LotjaGi1g1v0077000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain protein, putative; TAIR: AT2G40140.1 zinc finger (CCCH-type) family protein; Swiss-Prot: sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29; TrEMBL-Plants: tr|V7BA69|V7BA69_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0077000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11099739..11103417) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGGGAATGACAAATGACTAAACTAATACAAATAATTAAATCAATAAAATAAAAAGAAGAGATAAGAAGAGAGAAGGA ACAGAGCAAATGCATTTTGGCCAGAGATTCACAACTCATAACAAAACTGCACGTGAGAGTAAACCACCCGTTGAGAGAAG GAGCCTCCCTCTGAGGAATCCCTGGTGTGGCCCACACTCAAATTTAGATCATTTCATTTGAATTTGAATGTGAATTTGAG TTTCATATACATTTACATTTAGGAAGATAGTGAGTGACATTAAGCAAACGCTGCTTGTGGGCCCTAGCTTTAGCATTGAA TAATTGACTTTGACCAAAGAGAAAGAGAAACACAAGAGGAAGAAAAGTCACACTTTCCTCTCTTCTTCCTTTCTTCCCCT CATAAAAAGGCCTACCCATCCCTCCCTTGTTTCCTCATCTTCTCTCACTCCATTTTCCTCTTCACTCTTCATTGCAACCA ACAACACAAACAACAAAACAACCTCATCATAGTGTGATACTCCATCTCTACTACTATTCAATAGGTATGTATTTGTTTGC TTAAAAAAAAAAGCTTGGATTTTTATTTTTTTTGTTGGGTATTCTCCCTTGATCTTAGGTTATTGAGCTGATTTTGGGAA AATAATTTGTGGGTTTGCTTCTGGGTAGGTTAAAGTTTCAAACTTTGGTTTTAGATTTAGGTTGTTACTTATTTTGCAAC TTTTTCCCTGTTGAGATTTTGAAAATTTGAAATCCGAAGTTTTTGTAGATTCTGTTATGGGTTTTATCAAATAGGTATAT ATATAAACAGTTTTTATGGGATTTTAACTAGTTGCACATCTTTAGGGATTTGAAAATCAGGGTTGTTTTTAGATATTGCT TTGAGTTTGGAGGTTGATTGAGTTTGTGATATCCTATTCTGCAGGATTTGGAGCATGTGCAGTGGTTCAAAAAGTAAACT TTCTTCCTCAGAACAAGTCATGGAGAGTCAGAAGGAGAATTGTGATGGTCTCCACAACTTTTCAATTTTGCTTGAATTGT CTGCTTCCAATGACTTTGAAGCTCTCAAGAGAGAAGTGGATGAGAAGGGTTTGGATGTCAATGAGGCAGGCTTTTGGTAT GGAAGAAGGATTGGATCAAAGAAGATGGGATCTGAAAAGAGGACCCCTCTTATGATTGCTTCTTTGTTTGGAAGCACAAG GGTGGTCAAGTATCTTGTTGAGACAGGAAGGGTTGATGTGAACAAGGCCTGTGGTTCTGATAAGGCCACAGCTCTTCACT GTGCTGTTGCTGGTGGCTCTGAGCTCTCTCTGGAGGTTGTCAAGGTCTTGCTTGATGCCGGTTCAGATGCTGATTCCCTT GATGCTTGTGGAAATAAGCCGATGAATTTGATTGCGCCTGCCTTCAATTCTTCCTCCAAATCAAGGAGGAAGGCCATGGA GTTGCTTCTGAGAGGTGGGGAGAGTGGTCAACTCATTCATCAGGAGATGGACCTAGAGTTGATCTCTGCTCCTTTCTCAT CAAAAGAAGGAAGTGATAAGAAGGAATATCCTGTTGATGTATCGTTGCCGGACATTAACAATGGTTTATATGGAAGTGAT GAGTTCAGGATGTACAGTTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCCCATGACTGGACTGAGTGTCCTTTTGTTCA TCCAGGGGAGAATGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCCTGCCCTGAGTTTCGCAAAGGGG CGTGCCAGAAGGGCGATTCCTGCGAGTATGCACATGGTGTTTTCGAGTCTTGGCTCCACCCTGCACAATACAGAACAAGG CTTTGCAAGGATGAGACTGGCTGCGGTAGAAAGGTTTGCTTCTTTGCTCACAGACCTGAGGAGCTGCGACCGGTGTATGC TTCCACTGGCTCAGCTATGCCTTCACCAAAATCTTACTCATCTAATGCAGTTGACATGTCAGTGATGAGTCCATTGGCTC TTAGTTCCTCATCCTTGCCTATGTCAACTGTTTCAACACCACCCATGTCTCCCTTGGCGGGTTCATTGTCTCCCAAGAGT GGAAACTTGTGGCAGAACAAGATAAACCTAAACCTTACACCGCCATCATTGCAGCTCCCCGGTAGCCGGTTGAAGACTGC CTTGAGTGCCAGGGATTTTGATCTGGAGATGGAAATGCTCGGGTTAGGAAGTCCTACTCGTCAACAACAGCAGCAACAGC AGCAACAACAACAATTGATAGAAGAGATTGCCAGGATCTCTTCTCCATCTTTCCGCAATAGGATTGGTGATTTAACTCCT ACTAACCTTGATGACCTGTTAGGATCTGTTGATTCTAATTTATTATCTCAACTCCATGGACTTTCTGGACCTTCAACACC TACACATTTGCAATCTCAAAGCAGGCATCAGATGATGCAGCAGAACATGAACCACCTTCGTTCGAGTTATCCATCGAACA TCCCTTCCTCTCCTGTGAGGAAGCCCTCGTCACTAGGGTTCGACTCATCCTCCGCTGTGGCGGCTGCTGTGATGAATTCC AGGTCTGCTGCCTTCGCGAAGCGAAGCCAGAGTTTCATCGATCGCGGCGCCGCCGGAACCCACCATCTCGGGATGTCTTC ACCTTCCAACCCTTCCTGCAGGGTGTCCTCTGGCTTTTCAGATTGGAATTCCCCTAGTGGGAAACTGGACTGGGGTGTGA ATGGGGATGAGCTGAGCAAGCTGAGGAAATCTGCTTCCTTCGGCTTCAGAAACAATGGGATGGCTCCAACTGGTTCCCCC ATGGCACATTCAGAACATGCTGAGCCTGATGTCTCTTGGGTTCATTCACTGGTGAAAGATGATCTCAGTAAAGAGATGCT TCCACCATGGGTTGAGCAGTTGTACATAGAGCAGGAGCAGATGGTAGCATGATGAGTGCAGCTGCCATGGCAAACAAAGC TTCTTGGTTATTCTGACAAAGTTTATTTATTTATTTATTTTATTTATTAATTGAAGTATTACTTCTGTCCAACATTACAT AAGAGTATAGTTAGTGATAGGATGAGAGATGTTGCAAAAAATCAACAAAGTTCAGGTTAATCCAGGGATTTGAAGATTTC CAAGTTCCAACTTCTAGATCAGGAAGGACTTGGAGAAACATTGGATGAAGTAAGGATGCTGATTTTTTCATTTAGATGTA TTATATAATTTATTAATTAGCCCATTTCTCAAGTGGGTGGTGGTTGTATTTGATTTTCTTTAGCAAGTGGACAAGTATTT TGTCATTGATTAAGCTGCACAATATTTTTTTATATTGTTATGCCTTTTGATCGATGTCCATTATGATCATTCTTGGGAAT TTCTTATTGTCTAGTATTCTGTGGGCATCTTATTTAATATTTCTATCCTTGAGGTTACGTTGAGCTGATTCATCTTGTCG TTTATATATCTAAAACACAATCATACAAAAAATGATCCGTATTATTCGCAAAAGATATATATTATTTGTGTTGGCTTTTG TTCATGTACGTGACAATCAACGTTATAAACGGATGTGCGGCCGGCAATGATGAGTAATCGTAGTCTGGAAGTATGAATGG ATCAAGTTCGAATCTAACTATCTTAATCTAATTTTATGTGAAACTTGAATTTTAAGATTTATAAACTAGTGTTCTTTTT
CDS sequence (LotjaGi1g1v0077000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCAGTGGTTCAAAAAGTAAACTTTCTTCCTCAGAACAAGTCATGGAGAGTCAGAAGGAGAATTGTGATGGTCTCCA CAACTTTTCAATTTTGCTTGAATTGTCTGCTTCCAATGACTTTGAAGCTCTCAAGAGAGAAGTGGATGAGAAGGGTTTGG ATGTCAATGAGGCAGGCTTTTGGTATGGAAGAAGGATTGGATCAAAGAAGATGGGATCTGAAAAGAGGACCCCTCTTATG ATTGCTTCTTTGTTTGGAAGCACAAGGGTGGTCAAGTATCTTGTTGAGACAGGAAGGGTTGATGTGAACAAGGCCTGTGG TTCTGATAAGGCCACAGCTCTTCACTGTGCTGTTGCTGGTGGCTCTGAGCTCTCTCTGGAGGTTGTCAAGGTCTTGCTTG ATGCCGGTTCAGATGCTGATTCCCTTGATGCTTGTGGAAATAAGCCGATGAATTTGATTGCGCCTGCCTTCAATTCTTCC TCCAAATCAAGGAGGAAGGCCATGGAGTTGCTTCTGAGAGGTGGGGAGAGTGGTCAACTCATTCATCAGGAGATGGACCT AGAGTTGATCTCTGCTCCTTTCTCATCAAAAGAAGGAAGTGATAAGAAGGAATATCCTGTTGATGTATCGTTGCCGGACA TTAACAATGGTTTATATGGAAGTGATGAGTTCAGGATGTACAGTTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCCCAT GACTGGACTGAGTGTCCTTTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGT TCCCTGCCCTGAGTTTCGCAAAGGGGCGTGCCAGAAGGGCGATTCCTGCGAGTATGCACATGGTGTTTTCGAGTCTTGGC TCCACCCTGCACAATACAGAACAAGGCTTTGCAAGGATGAGACTGGCTGCGGTAGAAAGGTTTGCTTCTTTGCTCACAGA CCTGAGGAGCTGCGACCGGTGTATGCTTCCACTGGCTCAGCTATGCCTTCACCAAAATCTTACTCATCTAATGCAGTTGA CATGTCAGTGATGAGTCCATTGGCTCTTAGTTCCTCATCCTTGCCTATGTCAACTGTTTCAACACCACCCATGTCTCCCT TGGCGGGTTCATTGTCTCCCAAGAGTGGAAACTTGTGGCAGAACAAGATAAACCTAAACCTTACACCGCCATCATTGCAG CTCCCCGGTAGCCGGTTGAAGACTGCCTTGAGTGCCAGGGATTTTGATCTGGAGATGGAAATGCTCGGGTTAGGAAGTCC TACTCGTCAACAACAGCAGCAACAGCAGCAACAACAACAATTGATAGAAGAGATTGCCAGGATCTCTTCTCCATCTTTCC GCAATAGGATTGGTGATTTAACTCCTACTAACCTTGATGACCTGTTAGGATCTGTTGATTCTAATTTATTATCTCAACTC CATGGACTTTCTGGACCTTCAACACCTACACATTTGCAATCTCAAAGCAGGCATCAGATGATGCAGCAGAACATGAACCA CCTTCGTTCGAGTTATCCATCGAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCGTCACTAGGGTTCGACTCATCCTCCG CTGTGGCGGCTGCTGTGATGAATTCCAGGTCTGCTGCCTTCGCGAAGCGAAGCCAGAGTTTCATCGATCGCGGCGCCGCC GGAACCCACCATCTCGGGATGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTGGCTTTTCAGATTGGAATTCCCC TAGTGGGAAACTGGACTGGGGTGTGAATGGGGATGAGCTGAGCAAGCTGAGGAAATCTGCTTCCTTCGGCTTCAGAAACA ATGGGATGGCTCCAACTGGTTCCCCCATGGCACATTCAGAACATGCTGAGCCTGATGTCTCTTGGGTTCATTCACTGGTG AAAGATGATCTCAGTAAAGAGATGCTTCCACCATGGGTTGAGCAGTTGTACATAGAGCAGGAGCAGATGGTAGCATGA
Protein sequence (LotjaGi1g1v0077000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCSGSKSKLSSSEQVMESQKENCDGLHNFSILLELSASNDFEALKREVDEKGLDVNEAGFWYGRRIGSKKMGSEKRTPLM IASLFGSTRVVKYLVETGRVDVNKACGSDKATALHCAVAGGSELSLEVVKVLLDAGSDADSLDACGNKPMNLIAPAFNSS SKSRRKAMELLLRGGESGQLIHQEMDLELISAPFSSKEGSDKKEYPVDVSLPDINNGLYGSDEFRMYSFKVKPCSRAYSH DWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCGRKVCFFAHR PEELRPVYASTGSAMPSPKSYSSNAVDMSVMSPLALSSSSLPMSTVSTPPMSPLAGSLSPKSGNLWQNKINLNLTPPSLQ LPGSRLKTALSARDFDLEMEMLGLGSPTRQQQQQQQQQQQLIEEIARISSPSFRNRIGDLTPTNLDDLLGSVDSNLLSQL HGLSGPSTPTHLQSQSRHQMMQQNMNHLRSSYPSNIPSSPVRKPSSLGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRGAA GTHHLGMSSPSNPSCRVSSGFSDWNSPSGKLDWGVNGDELSKLRKSASFGFRNNGMAPTGSPMAHSEHAEPDVSWVHSLV KDDLSKEMLPPWVEQLYIEQEQMVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 665 | 664 | 0.0 | – | |
| PANTHER | 2 | 665 | 664 | 0.0 | – | |
| Gene3D | 5 | 203 | 199 | 3.3E-18 | ||
| SUPERFAMILY | 25 | 163 | 139 | 2.33E-17 | ||
| SMART | 27 | 57 | 31 | 4100.0 | ||
| Pfam | 70 | 140 | 71 | 4.5E-9 | ||
| ProSiteProfiles | 74 | 183 | 110 | 15.645 | ||
| ProSiteProfiles | 74 | 98 | 25 | 8.656 | ||
| SMART | 74 | 104 | 31 | 0.0022 | ||
| SMART | 109 | 141 | 33 | 0.036 | ||
| ProSiteProfiles | 109 | 144 | 36 | 10.606 | ||
| Gene3D | 257 | 335 | 79 | 9.2E-8 | – | |
| SMART | 263 | 289 | 27 | 2.8E-5 | ||
| ProSiteProfiles | 263 | 290 | 28 | 13.338 | ||
| Pfam | 268 | 288 | 21 | 3.9E-5 | ||
| SMART | 298 | 321 | 24 | 22.0 | ||
| ProSiteProfiles | 298 | 322 | 25 | 6.427 | ||
| MobiDBLite | 480 | 502 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0077000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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