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LotjaGi1g1v0078500.1

Overview

Field Value
Gene ID LotjaGi1g1v0078500
Transcript ID LotjaGi1g1v0078500.1
Lotus japonicus genome version Gifu v1.2
Description Pleckstrin homology domain-containing protein 1; TAIR: AT5G05710.1 Pleckstrin homology (PH) domain superfamily protein; Swiss-Prot: sp|Q9ST43|PH1_ARATH Pleckstrin homology domain-containing protein 1; TrEMBL-Plants: tr|T2DN45|T2DN45_PHAVU Pleckstrin homology domain-containing protein; Found in the gene: LotjaGi1g1v0078500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:11323656..11324098) extracted from Lotus japonicus Gifu genome v1.2.

ATGAACAGCCTGTGGCGCGCGGCGACCGGCCAGGCGGAGCCGCCAACCGACTACGACGGCGTTGAATTCTGGTCCAACCC CGAACGCACCGGCTGGCTCACAAAACAAGGCGAGTACATCAAAACCTGGCGCCGCCGCTGGTTCGTTCTCAAACAAGGAA AACTCTTCTGGTTCAAAGACTCCGCCGTCACGCGCGTCTCCAAGCCACGCGGCGTCGTCCCCGTCGCCTCCTGTCTCACC GTCAAGGGCGCCGAAGACGTCCTCCACAAACCCTACGCCTTCGAACTCTCCACGCGCTCCGATACGATGTACTTCATCGC CGATTCTGATAAGGAGAAGGAGGACTGGATCAACTCTATTGGCCGCTCCATCGTTCAGCACTCCAGATCCGTCACCGATT CTGAGATCGTCGATTATGACAGCGCCAAACGCTGACGGAATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0078500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACAGCCTGTGGCGCGCGGCGACCGGCCAGGCGGAGCCGCCAACCGACTACGACGGCGTTGAATTCTGGTCCAACCC CGAACGCACCGGCTGGCTCACAAAACAAGGCGAGTACATCAAAACCTGGCGCCGCCGCTGGTTCGTTCTCAAACAAGGAA AACTCTTCTGGTTCAAAGACTCCGCCGTCACGCGCGTCTCCAAGCCACGCGGCGTCGTCCCCGTCGCCTCCTGTCTCACC GTCAAGGGCGCCGAAGACGTCCTCCACAAACCCTACGCCTTCGAACTCTCCACGCGCTCCGATACGATGTACTTCATCGC CGATTCTGATAAGGAGAAGGAGGACTGGATCAACTCTATTGGCCGCTCCATCGTTCAGCACTCCAGATCCGTCACCGATT CTGAGATCGTCGATTATGACAGCGCCAAACGCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0078500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNSLWRAATGQAEPPTDYDGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFKDSAVTRVSKPRGVVPVASCLT VKGAEDVLHKPYAFELSTRSDTMYFIADSDKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSAKR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22902
1 143 143 2.3E-90 –
PANTHER
PTHR22902:SF26
1 143 143 2.3E-90 –
SUPERFAMILY
SSF50729
23 125 103 6.42E-29 –
Gene3D
G3DSA:2.30.29.30
24 135 112 5.4E-29
IPR011993
ProSiteProfiles
PS50003
26 125 100 18.364
IPR001849
SMART
SM00233
27 127 101 1.2E-20
IPR001849
Pfam
PF00169
28 123 96 2.5E-19
IPR001849
CDD
cd13276
29 134 106 3.24646E-64 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0078500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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