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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0079400 |
Transcript ID | LotjaGi1g1v0079400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | 60S acidic ribosomal protein P0; TAIR: AT2G40010.1 Ribosomal protein L10 family protein; Swiss-Prot: sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0; TrEMBL-Plants: tr|I3SXM4|I3SXM4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0079400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11472664..11474478) extracted from Lotus japonicus Gifu genome v1.2.
GCCCACCGGGCCACATAGTTTCACAGCAAGGCCCAAACAGTGACAATCTTTCAATCTAGGTCTCTGTTTCCTGCTTCTTG TAACTGGTTCAGTAGGGGAAGAAGAAGAAGAAGAGAGAGAGAGAGGGTTCAGCAAGGAGCAACAATGGCGGGGAAGGTGT CGAAGGCAGCATACGATGCGAAGATGTGGAAGCTTCTACGAGAGTACAGCCAGGTGCTGGTGGTTTCAGCGGACAACGTT GGGTCGAACCAGCTTCAGGGGATACGGAGGGCGCTGCACGGTGACTCAGTGGTGGTGATGGGGAAGAACACGTTGATGAA GCGCTCTATCATTGACGATGCAGAGAAAACTGGCAACAAGGCCTTCCTCAACCTCGTTCCTCTCCTTGTGGTAACTCTTG ATCATCACAATCCCAATTTCTTGCATTGTAAAATGATTTTCATTGGAAGATGAAGAAGAAGAAGCAATGTGTTTATCTGG ATTTTGAAGTTTGTTACTTGAATTAGGGGAACGTGGCGTTGATTTTCACCAAAGGTGACTTGAGGGAGGTTAGCGAACAG ATTGCAAAGTACAAGGTGAAGTAACATGTTCTGTTTCTCTTGATGTTTTGAACATTCAGTGTTGCTTTTAGCTAACCATG AGGTTGTTGAGTGTGTAAAGGGACGTTAGTTCTGATAGTTTGATCCATTTTTGGCTATGTTTCCATAATATCTACATATG TGTGTGTGTTTGGATATCAGTTGAGTCCTAATCGATTAGAAGAGTTCCGTTTTCACTCAAAGTGAGTGACTCAGTGCTAG CGTCGGTTTACACTGGTATTGTTGGGTATCCAGACCAAATTATACTTCGGAAATGATGGTTTAGTTTGTTCATAAGTTAG AGTCCTTGACTTCAATGCTCGATGAGATGAGTACAGTAGTTAATAGCAAACTGAGATTAGAAGAGTTTGCTTTGATTCTT TGTAATCATAAACTTTTACTAATGTTCAATGTTGTGCTCAAAATCTAAATTTGGGCATGTCATTGTTTGCTTTACATCAT GTAAATGTGTTTTATCAAGTTACTTGATGTAAATGTCCAAGATTTTCCTATCTTGGGTAGAGAAAAAGGTTGGTTTAGTG CGTGGAAATTGTATTCTCTTCGGTGTGATCGGGCCTATTGCATATTTATTTAACTTACCTTAGGAATGAGTAAATATTGG TCAAGTTCACAATGGAAGACTTGTTTCCTTATCAAGGACCTATGAGCCTCATATGTATTCACTATTTCTGCAGGTCGTTG ATCCTATTCTCATGTGCCCTAAGTACATGACATACGACTCATACCGCACTTGTTCCTATTTGCAATCAGGACAATTACCC TTAGGCCTCACGTGTTGTAACCAGCAATCTACACAGACTTCAGAGCCTTTTCTGGTCAGCTCAAAATTCTTGCCACACCA GCATTGTCATTTGATGAGATCAAGACAGTTTTTGATGACCAGTATATGGGCACCTTTTCTCCTTTTGGCTGGTAACTTGT GATGTGTAAGAAGTATTTTGATTTTTATTTATAGTTTTGTTAAGAGAATGATTGTCACAGTACTGATCCTTTCCTTGAGC ACTGTGGCCTTTCAAACTCTTTGTATTTTGAATTCACCCTTTTCAGGAGTGATGGCAAATAAATATGATTTTGATTAGGA TTGAGTTCTGATGTAAGGTTTTTTTAATGTGCTCGGGAATTCTATCCTTTATTTGGATAAGGATATGACAATACATGTAT TATCTGATTTGTTAATGAATTATCCCATGTTTATTGCTTTTGATTGGCATGATCG
CDS sequence (LotjaGi1g1v0079400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGGAAGGTGTCGAAGGCAGCATACGATGCGAAGATGTGGAAGCTTCTACGAGAGTACAGCCAGGTGCTGGTGGT TTCAGCGGACAACGTTGGGTCGAACCAGCTTCAGGGGATACGGAGGGCGCTGCACGGTGACTCAGTGGTGGTGATGGGGA AGAACACGTTGATGAAGCGCTCTATCATTGACGATGCAGAGAAAACTGGCAACAAGGCCTTCCTCAACCTCGTTCCTCTC CTTGTGGGGAACGTGGCGTTGATTTTCACCAAAGGTGACTTGAGGGAGGTTAGCGAACAGATTGCAAAGTACAAGGTCGT TGATCCTATTCTCATGTGCCCTAAGTACATGACATACGACTCATACCGCACTTGTTCCTATTTGCAATCAGGACAATTAC CCTTAGGCCTCACGTGTTGTAACCAGCAATCTACACAGACTTCAGAGCCTTTTCTGGTCAGCTCAAAATTCTTGCCACAC CAGCATTGTCATTTGATGAGATCAAGACAGTTTTTGATGACCAGTATATGGGCACCTTTTCTCCTTTTGGCTGGTAACTT GTGA
Protein sequence (LotjaGi1g1v0079400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGKVSKAAYDAKMWKLLREYSQVLVVSADNVGSNQLQGIRRALHGDSVVVMGKNTLMKRSIIDDAEKTGNKAFLNLVPL LVGNVALIFTKGDLREVSEQIAKYKVVDPILMCPKYMTYDSYRTCSYLQSGQLPLGLTCCNQQSTQTSEPFLVSSKFLPH QHCHLMRSRQFLMTSIWAPFLLLAGNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 187 | 187 | 5.0E-121 | – | |
PANTHER | 1 | 187 | 187 | 5.0E-121 | – | |
Gene3D | 3 | 128 | 126 | 3.0E-32 | ||
Pfam | 6 | 104 | 99 | 8.9E-19 | ||
SUPERFAMILY | 7 | 104 | 98 | 9.15E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi1g1v0079400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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