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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0080900 |
| Transcript ID | LotjaGi1g1v0080900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal peptidase subunit-25; TAIR: AT2G39960.1 Microsomal signal peptidase 25 kDa subunit (SPC25); Swiss-Prot: sp|P58684|SPCS2_ARATH Probable signal peptidase complex subunit 2; TrEMBL-Plants: tr|I3T9H9|I3T9H9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0080900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11684167..11687647) extracted from Lotus japonicus Gifu genome v1.2.
ATCCAATGTAAAAAAATGGAATGAATGTAATAACACGTGGAGACAAGAAACAGTGCGCATTACGCACTGACCGGAGGTTT TATTCAGTGAGGTGCAGCAGCTAGCTAGTAACTGCTACATTACATTGCAGCATTACACAGCGTTCAGGTTCAATTGAATC GCGTTGCTTCTTCTCAATTTGGTCAATCCAAGTAGTCTCAGACTCAGAGTTCTAATGGCGTCCAAATCTCTAAAGAAAGC CAATCTCCTCGATCACAACTCCATCAAGCACATCCTCGACGAGTCTGTCTCTGAGGTCTGTCAAAACCCTAACCCCCATT TTCGATTTTGGTCAATTTTCCTTTAATTTTATGTTTGAATCGAGTTTTGGATCTGAATTTTGGGTTTGTAGATTGTAACG AGTCGTGGGTATGTGGAAGATGTGAGATTGAGCAACGTGAGGCTTTTGGTTGGGACTGTCATCATTGTCATTGCTCTCTT TGCTCAATTCTACAAGAAGAAGTTCCCTGAGAATCGGGATTTTCTCCTTGCCTGCATCGCCTTATATCCTTTTGCAATTT CCACCATTTATTTGCTTCTTTTGATTTGATGAAATTGCTCCATGTAGGGGGAAATTGGGTTTGTATGCAGGAGTTATTCA GATTGAAAGTTGTTAAGTTTCATTGTTAGATGGATTTGATGGTTTGTGTGAGAAAGGAATTGGGAATTGCTGTTGTTTTT TAATTTTGATTTGTTCTGGTTCAGTGCTGTTTGATCCTTAACTCTTGCATACGTATGTGATCTTCAATGGGGTGTTGCAG CTGATCATATACACTAAGGAGAAAAATGCCATTCTGTTTACTTATCCTCCTGCTGTAAGTTGCTCTGAACTTAGCTAAGG TGCCTGTTTTTAATGCTAGGGTTGAATTCCTATATGAATAATAGATGCATTGTTACAATTACTTTGCTTTGAATGACTGA TCTTCCTATATCTCAGCAATTGTAGATCACCTTTGAATTTTTTCTGTATTACTATGCTACTCACTACTTTCATAGTGCTT AATGTGCTCTGTTTAAATATGTGGCTATGTTTTATGACTGACTGATTTCAATTTATAAAGGTTATAGAGGGGTTAGGGTT TTAACTTTTAATAGACCTCAGAGGCGGTTTAAAATGATTCGGTTCAGCAGTTGTCTTATTGGCTTAAAGAGTGGATGGTA TACACCTGGAGAAACTGGGAAAAGGGTTGCCAAGGAGGATGAGCTGGAGTTGGGAGAAAGTGGGGAGTGGGATGTTAGTG GTGAAGTGGTGAGGATTGCGTGTCCATATAGGTGAATGGGTAGTGAAATGAGAGGTATAAAAAAGAATCATTCTCTTAGC ATGAATAGAGAGCACTAATTATATGTAGGTGTTTGGCTTTGGGGAGTAGCCGGTTTCCCTACTGCATTTTCTATGATTTC TACAATAATCATACCATTTTTCTTTGTCTACTCTCTGGATTACTGTTTTTTCTTTCTTCTGTTGGATTAAGATTGTATCG TAGTGCTTGTTTAGTCAACATTCCAGGAAATGCAAACGGGATTGGCATTCATAAAAATAAAATGTGTGTTTGTGAAGAGT GTGTTTCGATAAATTTCATGGTAGAAAATTTGATTTTGCATTGAGCAGAATTGATTCTAGGTGTAGGGCCCACCACACTA CTTTCGTTTATACTTAAAAGATGCTTCTACTTTATCATCTAAAGAAAAATCTGTTTTTCTAAACTCACTTTTAGACTATT ATTTCCGAACACTACTCAATTTTTGTCATCTCAATTCTTTCAAAACCAATTCTTCTTTACATCTATTATTTCCAAATCAA TTCTATCAAAATCTAAAAGAAATGGACCCTTTGAGTTAGTTCTGTTACAATGTTGACATGGCATTGGCATGGGCCTAAGG ATACATATGTTAATCTGAACATGACTGTGCTAGCTTAGTAGTCATTGTAAACATGAAGCAGATCACCTGTGCATTAAAGC ATACATGAAGTTGACTGACAGCTTAAACTAATCTCAGTTTGGTAAACAATATTTATTTGATATTGTGTTATGAAATGATT GAGTTGAACTTCTTATTATGTACTGGTATGATTATATTGTAGACTATTGCCTATATTTTTGTTTTTTTCTAATTTTCATG CATTTTCATCTGGAATTTGAGTTGATCCAAAGGTGCTTATGTTCTCTAGGGTTTTAGTTGCTTCCAGTGTTCATTGGATG TTGCTTCATTTTTCATAGATGATTTTTAGGGGGTAAGTGTGTGTTTGAATATCAGTTGAGTTGAGTGAAACACGAATGGA CTTTCACCCCACTCCATAAGAAGAGTTTCATTCACTTTTTATCTTAAAGTGTGTGCTAACCATCAGATATCCAAACATAG CCTCATGATTCATTATACTTACAGGGTTTCCATGGACCAAGGGTATAGACTGTAGATATTTTATGTTTTTATCTTTGTAG TAACTGTACGACAATGTCTTTTACTTCAATAAGTTAAGGTTTGCCTATGATCTGTAGTATCAAACCAAGTAATGGCATTT GACATGCATATAAGTTAGGATTATTATCACATATTCTAACTTCGATTTTATTTCATGCTTACAGGGATCCTTTACCAGTA CTGGTTTGGTAGTTTCCTCCAAACTGCCTAGGTTTTCTGACATGTACACACTTACCATAGCAAGTGCTGATCCAAAATCA ATTTCTGCAAATGAGCCTAAGCATTTAACTAAAAGTGTTACTCAGTGGTACCTATCTCTCTCCGCATCCAACCCCTATTC TTTATGCATGCCTGCAGTGGCACTGCACATGTGAATCTGTTGCACTGCTTTTTGAAGTTTAAAATGCATGTCTATTTATG TTTGGATTGCAGGTTCACCAAGGATGGAGTCTTAGTTGAGGGCCTCTTTTGGAAGGATGTTGAAGCTCTGATAGCTCAAT ATACGAAAGAACCAAAGAAGAGTAAGTGATGTGAAGACTTATCTTGGTTCTGCCAATGACATTTTGGAGGAGAAACATAT ATCTGGATATGGACTTTATTTCTATCCAATTTCTAAAGTTTAAAATGGAAGTGAGTAAATCAACCTTTCACTAGCATTAG AACACAAGTAATTCCTGTTTTTCTTCAGTTTATGCTATTGAAAAGGCCGAACCTCTATTTTCATTTACTCATATACTTTT TTTTTATAGAAAAATAAATTCTTTTAGAGGTGTTTGGTATGAGATTCTTTTAAGCTTCCCTGGAATCTTACCAAGGGGAA ATTCAACATTCCCATGAATGTGGGAAACATTAACATTTCTGTAACTAGTTGTCTATAATGCCGAAACTTCTTAGGAGGAA GAAGATTTAGCAGCATGAATCATCAAGAAAGCGATAATGTCGTTCTCAAATTTTTTCGAATAGTGATCTCGAACTTAGGG TTATAAATTTGATGATTTTCCAATACTTTGGCGTTGTTGGC
CDS sequence (LotjaGi1g1v0080900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCCAAATCTCTAAAGAAAGCCAATCTCCTCGATCACAACTCCATCAAGCACATCCTCGACGAGTCTGTCTCTGA GATTGTAACGAGTCGTGGGTATGTGGAAGATGTGAGATTGAGCAACGTGAGGCTTTTGGTTGGGACTGTCATCATTGTCA TTGCTCTCTTTGCTCAATTCTACAAGAAGAAGTTCCCTGAGAATCGGGATTTTCTCCTTGCCTGCATCGCCTTGTATGTG ATCTTCAATGGGGTGTTGCAGCTGATCATATACACTAAGGAGAAAAATGCCATTCTGTTTACTTATCCTCCTGCTGGATC CTTTACCAGTACTGGTTTGGTAGTTTCCTCCAAACTGCCTAGGTTTTCTGACATGTACACACTTACCATAGCAAGTGCTG ATCCAAAATCAATTTCTGCAAATGAGCCTAAGCATTTAACTAAAAGTGTTACTCAGTGGTTCACCAAGGATGGAGTCTTA GTTGAGGGCCTCTTTTGGAAGGATGTTGAAGCTCTGATAGCTCAATATACGAAAGAACCAAAGAAGAGTAAGTGA
Protein sequence (LotjaGi1g1v0080900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKSLKKANLLDHNSIKHILDESVSEIVTSRGYVEDVRLSNVRLLVGTVIIVIALFAQFYKKKFPENRDFLLACIALYV IFNGVLQLIIYTKEKNAILFTYPPAGSFTSTGLVVSSKLPRFSDMYTLTIASADPKSISANEPKHLTKSVTQWFTKDGVL VEGLFWKDVEALIAQYTKEPKKSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| PANTHER | 5 | 183 | 179 | 2.4E-72 | – | |
| PANTHER | 5 | 183 | 179 | 2.4E-72 | ||
| Pfam | 17 | 173 | 157 | 2.4E-41 | ||
| Phobius | 41 | 59 | 19 | - | – | |
| TMHMM | 42 | 61 | 20 | - | – | |
| Phobius | 60 | 70 | 11 | - | – | |
| TMHMM | 71 | 90 | 20 | - | – | |
| Phobius | 71 | 91 | 21 | - | – | |
| Phobius | 92 | 96 | 5 | - | – | |
| Phobius | 97 | 115 | 19 | - | – | |
| Phobius | 116 | 184 | 69 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Signal peptidase complex | A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space. | ||
| Biological process | Signal peptide processing | The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. | ||
| Molecular function | Peptidase activity | Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0080900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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