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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0081700 |
| Transcript ID | LotjaGi1g1v0081700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acid phosphatase 1; TAIR: AT2G39920.1 HAD superfamily, subfamily IIIB acid phosphatase; Swiss-Prot: sp|O04195|Y2992_ARATH Uncharacterized protein At2g39920; TrEMBL-Plants: tr|G7KBV9|G7KBV9_MEDTR Acid phosphatase-like protein; Found in the gene: LotjaGi1g1v0081700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11794090..11798037) extracted from Lotus japonicus Gifu genome v1.2.
CAAGATTAATGATTTTCATTAAAATTAGATGTTACTTCCTTTTTTTTAATCAAAGAAAAGAGGTGAATATTAGAATGAGT AGTGTTTTTAATTTCTCACTCATCAATCATGGAAAGGTAGATCATACAATGATGAAAATTTTAATCTTCTTGTGTTCTAC ATAATTCTATCCAACATCTTCTCTCTTCCATAATTGACTGTGGCACATGATGATGTCGTGTGCACTTTTCTCTCACTGTC AAGTGTCATCCCAAATCACGGGTTTAACTGCATATGTATTCACAAGATGGTTGGTTACTTTGCTCGTGTTGAATTAAATT TCTAGCTATTCTGGGATAGAACACCATAATTTGTGTTAGTATCTGTTCTTATACTCCCACCTTTAAGACAATTTGAGTTG TTTTGTTTGTCATGGTGCTTTGGGACTCCACGTGATTAGGTACCTGATCCTGTCTCAGCTGAAAGTTTGGTCTATATGGC TTGGATGTTTTCTATTTTGAAATTCAATCGTGTGATTCAGTTCTTGTCTTCATTGGCTACTCTTGATTGAATGGAGAAAT TTGGATTGTATTCTGGATCATCTTATTTTTTTCTCAGAAATCAGAATCAATTCTCCCTAGAATTGATTTTGACTTTAGGA TCAATTGCAGGAGGATTTCCAAACATATTAGATGTTGTACAAGAATTTGGGCTAGTGAGTGATAACTTTTTTCCTCTGTC TTCTCATGATCACTTCATGTTGAAATGTTTCATTGGCAAAGAACTTTGTAAGGCTAGAAAAAGGAAGGAAAAATGGTGTT CTCTGTATTTGCTTGTTAGTTCTGATTTTTTTCTATAACTAGCATAGCAATTCGATTGCGTTTATGTTTGAGAAAAATAA GCTGATCTAAACATGTTATTATGCGTTTGTCATGATGGTGGAAGCTGATGTTATGAATGATTACCAAAATTCTGTAAAAT TTCAGGATGCCCCTTTGATTTCTTGAAGCAAGCTGTAGGTGTTACTTGATCTGGATTGAAGGATAGATTGAAGTTATGTC TGCTTATGGCCATCAAACGGAGCATATGTATTCTGAAAGAAGTCTCACAGGTGGTTCTGGTAAGTGGTGCCAGCTTTTCC ATTCTTTGATTCCAAATGAATCAGAAATATAATAATCCATAGTAGAGGGATCTTATCTTTTGTTGGTAGATAACAATTCA GAGCTTGTTCTAAGCTATCTTATCTTTCTGCCTCAGTCATCCTTCAAACTGTTATTTTGGTAAGTAGTGATGTTGATATT ATTTGTCCTGTTTCTTTCCTGACCACAGAGGTGAGGAGCAGTTTTGTGCTGGAATCAGGATTCTACATCACTACTTTTGC TGCAACCATCTTCATTGCTGGATTCGCCGCCATCGGGCTTTTACTAATTACTTTGTTGGTTTCCCTGGCATTGATGCTGC AATCTTGTCAAGATAATAACGGTGGAGTTGCTGAGCTTCAGGATAAAAATGGTGACTACAGTTATTGCAAGGTTTATTCC CTGCATGCTAAGCTAAATAACTTGGAAGGACATGATCCTCCAAACATATGCAAGGACCTGGCCTTAGAGTATATCAAAGG AGGTCAATATGCTAGAGACTTGGATTTAACCAGGTCTGTGATTGAGGATTACTTTGATAATGTTAGTTCATCAGATGATG GTCTTGATGTGGTATTGATAGACATAGATGGCATCTTTCCACCAAATCTTCACTCTTCCAATTTGTTTCAAAGGTAATTT TATCATCTAAGCTGGTATTTTTAATTCTTCTTGCACTATGTCAAGGTTTGTTTTTGAATCTGCTTGAAATTTTCTCCGAT CCTAAACTGTGTTTGAATATCAATTGAGTGTAACGTCAACAGACTTTCATCTAAATCTATAAAAAGAGTTTCAAACTCTT TTGTCTCGAAGAAGTATTAGCGTTTGTTTGCACTGGTGCTAACGGATATCCAAACAAGCAAATTCCCAGTTTGTTTTTTA GGACATAATTTCCCTTCCTAAAGGAGGAATCTTATTTCTTTTGGTTCAATTTTGACTGTCAGTAAAAGAAGTTATCCTTC CTTGTATTCTTTAACATACTACATTTGGTAACTTGAAAGATATAATTTCACAGAGAAATTTTTGGAGTAACATGCAATCT GAATCTTCATGGTCTTTGTTTATTCTCTTATCAGATCCTCTAGCCAATTATGTTCCCTGATTCTAGATGATGTAAAATAT AGATAAATTAGATCAGGAACAGCTGGAATTGTGGTATTTTGTTGCTACAACTTGCATCAGTTTACTAAATCATATTTCTT TGTACATCTTTTATGTAGCTTATCCAACTTGATGCTGATCTGCATATTATTATTAGCAGTAACTTGACAATGTTTTTCTT TTGGTGTGGGTTTTGTAAGAACAGCATTAGCAATTGTATCTTAGAGGCAAGGAAGTTAAAGCGCATGCTTGTTTTAAGAT TATTCATGAATCTTCAAGCTAGTAGGTGGTTTGTAATTCTGTTATCAAGAGAGCCTGGGACACACCAAAATGTCACCATC GATAACCTTCTCTCTGCTGGATTTAGAGGTTGGTCTTCCTTGATGATGAGGTATTGTGAATAAGTTCTGACCTCATATCC TGGATAAGGGTTTAGGAATGGTTTCAAGTTTGTTTAGACTTTAAACTAGCTACATAAACTTCACATTTAAAGAATCTAAC CTCTCATTTCAACTATTTTGGGTTCTCAAAGACTCTTTCCAGTTTGTTTTTTCGGAGAATCAATTCTTACACACAGAAGC TACTGACAGATGCTTCTTCTCAGAATTGATTTTGGCCTTATAATCAACTATAGAAGGATTTCCAAACATGCACTAACTAT GCTTGAAATTGATGGTCTTTATACGAAGCTTTACAAACAATTCTTTCTATACAACCAAATCAAAAGGCCAGACTAAGTGC ATGTTTAGAAACCTTTCAACAATTGTTTCGTAAGTCAGAATCAATTTTAGGGAGAAGCTTCTGTATTAGCTTCTGAGTGC CAGAATTGATTCTGAAAAAAGAAAAGTTGATCCAAACATGCTCTAAGCTTTCATCTTTACCAAAAACATATGTAAGAACC AAATCTTATGTCACCAGTGATGTTCACTTTTGCAGAACAGAAGATGAAGATTCTACCAAAGCAAATGAGTACTTTTCTAG GCAAAGGAATGTGATACAGACCAAGGGTTTCCGTATAAAAAGCATCATAAGCAGCCATATAGCTGCTTTGAGTGTTGCAG ATACAGGAATACGAAATTTTTTGCTTCCAGATCCTATATGTGACAAGTTTGAGCAGCAAAAGAGAGCATAGATTGCAGGA TGATGGAGTTTTTGTTGGACTGTAATTTTTTAATTTTATTCTCTGAATCTTGTTTTGTTCACATCAGGGATATTGTAATT ACACGTAGATCCAAAAGACAGGTAGCATAATCAAATATAAAATCATACATATGCTTTTTAAAAGTTATAGAAGTTGAAGT TTTTTTATTCTTGCATCATAGGACCTGTCAGAAATGTTAAATACTACTAATTTTAGGATAATTGATTTATTAACAGCATA TACAATTTAACTTTATCATGCCACCAGATGATAATTAAATTAAAACAAGGAAACAATAAAGGATCTTGCTCATTTCTTTA TTTCCTTTGGAAATCAATAGGTCGGAGTAAGAAAGCTTTAATTACATTGGATGAGTAACAGTTCAAAGACATTGAGAGCT GGTTTGTGCATTTGTGTATACAACATAATTAAGCGTTTGTACCAATAAGCAATTATCGCGCTTACTCATAAGCTAATTGA GAAACTTATTGAAATAGGCTGAAAATAGTTTATGAAAGTAAATTCAAATCGGTCATATGGTATTCACATAAACTCTCTTA AACACTTGCATAAACACTTATACTATAC
CDS sequence (LotjaGi1g1v0081700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCTTATGGCCATCAAACGGAGCATATGTATTCTGAAAGAAGTCTCACAGGTGGTTCTGAGGTGAGGAGCAGTTT TGTGCTGGAATCAGGATTCTACATCACTACTTTTGCTGCAACCATCTTCATTGCTGGATTCGCCGCCATCGGGCTTTTAC TAATTACTTTGTTGGTTTCCCTGGCATTGATGCTGCAATCTTGTCAAGATAATAACGGTGGAGTTGCTGAGCTTCAGGAT AAAAATGGTGACTACAGTTATTGCAAGGTTTATTCCCTGCATGCTAAGCTAAATAACTTGGAAGGACATGATCCTCCAAA CATATGCAAGGACCTGGCCTTAGAGTATATCAAAGGAGGTCAATATGCTAGAGACTTGGATTTAACCAGGTCTGTGATTG AGGATTACTTTGATAATGTTAGTTCATCAGATGATGGTCTTGATGTGGTATTGATAGACATAGATGGCATCTTTCCACCA AATCTTCACTCTTCCAATTTGTTTCAAAGCATTAGCAATTGTATCTTAGAGGCAAGGAAGTTAAAGCGCATGCTTGTTTT AAGATTATTCATGAATCTTCAAGCTAGTAGGTGGTTTGTAATTCTGTTATCAAGAGAGCCTGGGACACACCAAAATGTCA CCATCGATAACCTTCTCTCTGCTGGATTTAGAGGTTGGTCTTCCTTGATGATGAGAACAGAAGATGAAGATTCTACCAAA GCAAATGAGTACTTTTCTAGGCAAAGGAATGTGATACAGACCAAGGGTTTCCGTATAAAAAGCATCATAAGCAGCCATAT AGCTGCTTTGAGTGTTGCAGATACAGGAATACGAAATTTTTTGCTTCCAGATCCTATATGTGACAAGTTTGAGCAGCAAA AGAGAGCATAG
Protein sequence (LotjaGi1g1v0081700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAYGHQTEHMYSERSLTGGSEVRSSFVLESGFYITTFAATIFIAGFAAIGLLLITLLVSLALMLQSCQDNNGGVAELQD KNGDYSYCKVYSLHAKLNNLEGHDPPNICKDLALEYIKGGQYARDLDLTRSVIEDYFDNVSSSDDGLDVVLIDIDGIFPP NLHSSNLFQSISNCILEARKLKRMLVLRLFMNLQASRWFVILLSREPGTHQNVTIDNLLSAGFRGWSSLMMRTEDEDSTK ANEYFSRQRNVIQTKGFRIKSIISSHIAALSVADTGIRNFLLPDPICDKFEQQKRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 16 | 292 | 277 | 2.5E-151 | – | |
| PANTHER | 16 | 292 | 277 | 2.5E-151 | – | |
| Phobius | 33 | 59 | 27 | - | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 60 | 184 | 125 | - | – | |
| Gene3D | 83 | 289 | 207 | 3.5E-24 | ||
| Phobius | 185 | 204 | 20 | - | – | |
| Pfam | 200 | 286 | 87 | 5.0E-9 | ||
| Phobius | 205 | 296 | 92 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0081700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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