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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0082900 |
| Transcript ID | LotjaGi1g1v0082900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G55730.1 myb domain protein 109; Swiss-Prot: sp|Q42575|MYB1_ARATH Transcription factor MYB1; TrEMBL-Plants: tr|A0A151S1V5|A0A151S1V5_CAJCA Transcription factor MYB44; Found in the gene: LotjaGi1g1v0082900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11926175..11930224) extracted from Lotus japonicus Gifu genome v1.2.
GGCAAATAAAAAGGCGAAACATGTTGCGTGTGCCCCAATCGGCATTGCAGTTAGTTACAGAGAACTGAACAACCAACAAC CGCCATGACCGAAGTGGACCCCACCGCCGCACCAACCACCGCTGCCAATGAACTCCTCGCCACCGCCGACGAAGCAAAGA CTTCCGCCGTCGCTGGAGGAGAACGAGGCGAGGGGTCGGAACTAGGGGGCGGCGAGGTGGAGGCGTCGGATGTCGGCGAG GGTAGCGGCGCCGGGAGAGTGAGGGGACCTTGGTCGCCGGAGGAGGATACGGTGCTGAGTCAGTTGGTGGCGCAGTTTGG GGCGAGGAATTGGAGCATGATCGCGCGGGGGATTCCCGGGAGGTCCGGGAAGTCGTGCCGGCTCCGGTGGTGTAATCAGC TTGACCCTTGCGTGAAACGGAAGCCCTTTACTGGTAATAGGAATCTCCATTGTACTGTGTTTAACTCTATGTTTTGTAGA ATTAGGGTATAAGGTTGGGTTTTAGTTTGAATATTTTGATTTTGATAAATATAATGCTGTTATTTGTATAGATAAATTTG GATTTTGTTTATGTGTTTGTTTTTTTTTAGATTCATTGAATGTTCACAGTTGCTGCTCTTTCATTATGCAATTGATTTGT TTTCGGGTCGTGATTGCATTAGGTTAGCAACTTGGAATTTTTCTGCTTATGTTAGCAGGGGAATGACTTGTATTTTTCTA GTGGCTGGATGATTTTTTGTATACTAATCCTTTTTAATTTGGCATTGGGAGATGGAGATGGTTTTTGAATTTTGTTATTT GTGGTAAAATTGACAATGATGTGCACTTTTGTAAAGATTAGTGAGATATAAGAGGGAAATGGATGGTGGTGTTGCACAGT TTAGTATGATCATAATAGTGAAGTTTCATTTGTAACTTCTTGCTTTGTATCATTGTGATAAGTTTGAGGAAAGAAATGCT CATATTCACAAAAGCTGGAGAAACATTAAAAGGCCATAGAATATAATGACTCATTAAGGGGATTTTGTTATTTGTGGTAA AATTGACAATGATGTGCACTTTTGTAAAGATTAGTGAGATATAAGAGGGAAATGGATGGTGGTGTTGCACAGTTTAGTAT GATCATAATAGTGAAGTTTCATTTGTAACTTCTTGCTTTGTATCATTGTGATAAGTTTGAGGAAAGAAATGCTCATATTC ACAAAAGCTGGAGAAACATTAAAAGGCCATAGAATATAATGACTCATTAAGGGGATTGGTAAATAGAATAGAATCAGCTG ATACTGATATGTTGTTTAAAAGTTATTTGCTAAAACTCCATGCCATAGTATGTTTTAGATGTAGAAACACAATGTGTCAA GTGGGAAATGGTGATATCTAATGCATTTCTTTAAGTCTTTATAGTGGTCCATTTCACAATTGATATAGATGCATTAGTGG GTAATATATTCTCTGAGTAGTACAAATTGGGAATTTTGGCTTTTCCGTATGTAGTTTATATGTAATAAGTCTGGCATTTT CTTTGAGTCTCTATTTGTTATACATTTTTCATCCTAGTTTTGATTATTACAATTTAGAAAGTGCTAAGAAGTGCATTCTA TAGCGGCAAGTGACAATGCTGTGTGTTATTCCTTATGTTGAAGTTGATTTTTTGTGATTCTCCTTGTCTTGTTGATTGAG TATTGAAACCATATTTCAACCGGCTTTTGTGGTAAGTGTTGGAAATTCAAGTGAGTTGAAGTCACACATTGGTCAATAAT CGACTAAATAAAGATAATATAAGAGAAGAGACCAAAATACCCATTAGGGTGTTTTTGGTGAAGATGTGATGTGATGTGAT GTTCACTCTTGTGTTCTATTGCCTGGGAAATTGTCTGATAGGTATCAGAAGAGAAAGAGATAGAGGAACAGAAAGAAAGA AAGATTGTATTATGAACAAGTAAGAATCAGTACAAGTGTACAATCTGGCATTCGAGAGGCTAGGTCTCTCCTACAACAAT GAGTGATTCCACAGATTGCCTAAAGCTGACTAATAAACCTTCTCTTATAGGATAGTCAGCTACTAACTACTAACCCACAA CAACAACTCTTACTAACTTCTATTTACACATGTGACACAATTCTCTAACACACTCACGCCCCCTTGTCTACAGCCTTAAC CTTCCTCAGATATACTTTCTTATTAAGAAGTTTAGGACTGACTCTATCATTTTTGCAAACCCCCTTACTTGGGTTCCCTC TAAACCCTACAGTAAAAAGAAATCAGAGTAGTTTAAGAAACTGATAGTGGTGTCAGTTTCACTTATCAATTTTGGCTTCA TCACTACTTTCATACTTACTAGTATTTCCTTAATTTATTTTGCGCAATCAATTATCATCTCATGCTATGAGACTTCGTCT TGGTCTCTGAGAATGTATGCTTGGTTTAGAGTACCCATGAGTTTAATAATAAAATACAAAACTAATAACATAACAAATGT TTAAGCTTGAGAGCCTCCGTATTGTTGTGTTGATGTGTTAACTGCTTGAATTGAATGAAAATAATACCTTATAGTTTCTT CCTGCCTACTTTATGCAATGTTCATATCAGACCTTGTCTTATCCTTATTTTTTCGACCAGTGAATTTTCCTATTATATGC TACATTTTCTATTGAAGTAAACCTGTAGGCACTTGAATGACAAACTAGCAAACCCTTCGTGTATATTGTGCCTGTCAATT ATCAAAATCTAATGAAAAATTTATTTGCTGCAGAGGAAGAGGACAGGCTCATAATTTCAGCCCATGCAATCCATGGAAAC AGATGGGCAGCAATTGCCAGGCTCCTTCCAGGTAGAACAGATAATGCTATCAAGAATCACTGGAATTCGACCCTAAGGCG CAGGTGCATGGGACTGGGAATACACGTCTCATCATATGCTGATACGATGGGAGGATACAGTAGCTTTGAGAAAACAAAAG CATCCTCTGAAGAAACCATGTCAATTGGAGATATCAATTCTATGAATCCTCCAGAAGTCAGGAATGTCATGACAAATAAT GAAATCAGACAGTATGAAAATAAACATCCACAAAAAGATGGTGCTGAAGTGGAGGGGCATCCAACCCTTTATCGACCAAA ATCACGTCTCAGTGCATTCAGTGTTTATAATCCTCTTGGCAAGCCAACAACTGAATCAACTCCAAAGATCTTCCCGAGGC AGGGTCCTTTGTTCCAACCCCTGATACCAGACGCAGGCACCTGTAAATTATTTGATGGTGTTGGATGTGAGCCCATGGTT CCATCGCAATGTGGTCATGGCTGCTGTTCATCAGAATTGAGGGGAAGCCATGCTCATGATTCACTATTAGGTCCTGAGTT TGTTGACTATTTGGAGCCTCCCTCTTTCTCAAGTGATGAATTGATTTCGATAACTACAGACTTAAACAACATGGCTTGGA TCAAGAGTGGCCTTGAGAATGTTGGTGCTGGAGTAACTGAAAATACTACTAACTTGACAGCATCCAATGGCTACATGCAA TTTGAAAATGGAAGCGGCAAGTTTTTGGGTGCTATGCAAATGCAATCTGCAACGATGCCTCAACAACATTTCGCAATGCC TGCAGAAGTTTGACGCGAACCTAAGCTTCCCTCAAGTAGGTTTCGATCTTCGTTTTGAGGCATTTTGTGGTGGGTGGATA TATGGTAGATGGTTTTAGTTTGTTTCATTACAGTCAATCTCAGAGTGGGGGCGTCAACCTAATTGAGTGAATAGCCCTTT GCGGCTTTTTTGTTCCTGTTAGGATTTATGATAGTTTTTTTAAGGACATCTTGATAACTCACATTTGAAAATATATATGC CAATTCGATCTAGTGAAGGACAATTTCATCAGTTGGATAGAAAATGAGACAATATTTGAGGACATAGGATCTTGATTCGT AAAGAAATAAATATTGGTAGCATTGCATTGGCATACATGTTGATAACATTTCACATTGGCATATATATTTTCCCGTTTTG GCATACATGTTGATAACTTTCTGCATTGGCATATATTATTTCCAATTAGC
CDS sequence (LotjaGi1g1v0082900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCGAAGTGGACCCCACCGCCGCACCAACCACCGCTGCCAATGAACTCCTCGCCACCGCCGACGAAGCAAAGACTTC CGCCGTCGCTGGAGGAGAACGAGGCGAGGGGTCGGAACTAGGGGGCGGCGAGGTGGAGGCGTCGGATGTCGGCGAGGGTA GCGGCGCCGGGAGAGTGAGGGGACCTTGGTCGCCGGAGGAGGATACGGTGCTGAGTCAGTTGGTGGCGCAGTTTGGGGCG AGGAATTGGAGCATGATCGCGCGGGGGATTCCCGGGAGGTCCGGGAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTTGA CCCTTGCGTGAAACGGAAGCCCTTTACTGAGGAAGAGGACAGGCTCATAATTTCAGCCCATGCAATCCATGGAAACAGAT GGGCAGCAATTGCCAGGCTCCTTCCAGGTAGAACAGATAATGCTATCAAGAATCACTGGAATTCGACCCTAAGGCGCAGG TGCATGGGACTGGGAATACACGTCTCATCATATGCTGATACGATGGGAGGATACAGTAGCTTTGAGAAAACAAAAGCATC CTCTGAAGAAACCATGTCAATTGGAGATATCAATTCTATGAATCCTCCAGAAGTCAGGAATGTCATGACAAATAATGAAA TCAGACAGTATGAAAATAAACATCCACAAAAAGATGGTGCTGAAGTGGAGGGGCATCCAACCCTTTATCGACCAAAATCA CGTCTCAGTGCATTCAGTGTTTATAATCCTCTTGGCAAGCCAACAACTGAATCAACTCCAAAGATCTTCCCGAGGCAGGG TCCTTTGTTCCAACCCCTGATACCAGACGCAGGCACCTGTAAATTATTTGATGGTGTTGGATGTGAGCCCATGGTTCCAT CGCAATGTGGTCATGGCTGCTGTTCATCAGAATTGAGGGGAAGCCATGCTCATGATTCACTATTAGGTCCTGAGTTTGTT GACTATTTGGAGCCTCCCTCTTTCTCAAGTGATGAATTGATTTCGATAACTACAGACTTAAACAACATGGCTTGGATCAA GAGTGGCCTTGAGAATGTTGGTGCTGGAGTAACTGAAAATACTACTAACTTGACAGCATCCAATGGCTACATGCAATTTG AAAATGGAAGCGGCAAGTTTTTGGGTGCTATGCAAATGCAATCTGCAACGATGCCTCAACAACATTTCGCAATGCCTGCA GAAGTTTGA
Protein sequence (LotjaGi1g1v0082900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEVDPTAAPTTAANELLATADEAKTSAVAGGERGEGSELGGGEVEASDVGEGSGAGRVRGPWSPEEDTVLSQLVAQFGA RNWSMIARGIPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDRLIISAHAIHGNRWAAIARLLPGRTDNAIKNHWNSTLRRR CMGLGIHVSSYADTMGGYSSFEKTKASSEETMSIGDINSMNPPEVRNVMTNNEIRQYENKHPQKDGAEVEGHPTLYRPKS RLSAFSVYNPLGKPTTESTPKIFPRQGPLFQPLIPDAGTCKLFDGVGCEPMVPSQCGHGCCSSELRGSHAHDSLLGPEFV DYLEPPSFSSDELISITTDLNNMAWIKSGLENVGAGVTENTTNLTASNGYMQFENGSGKFLGAMQMQSATMPQQHFAMPA EV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 65 | 65 | - | – | |
| PANTHER | 36 | 364 | 329 | 3.0E-155 | – | |
| PANTHER | 36 | 364 | 329 | 3.0E-155 | ||
| ProSiteProfiles | 55 | 106 | 52 | 19.571 | ||
| SUPERFAMILY | 57 | 153 | 97 | 2.48E-31 | ||
| Gene3D | 59 | 112 | 54 | 1.4E-21 | – | |
| SMART | 59 | 108 | 50 | 2.0E-14 | ||
| Pfam | 60 | 105 | 46 | 1.5E-14 | ||
| CDD | 62 | 104 | 43 | 1.33559E-14 | ||
| ProSiteProfiles | 107 | 161 | 55 | 26.661 | ||
| SMART | 111 | 159 | 49 | 1.9E-18 | ||
| Pfam | 112 | 155 | 44 | 2.2E-16 | ||
| CDD | 114 | 157 | 44 | 9.65471E-15 | ||
| Gene3D | 114 | 160 | 47 | 3.2E-20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0082900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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