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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0083400 |
| Transcript ID | LotjaGi1g1v0083400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock protein; TAIR: AT1G53540.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein; TrEMBL-Plants: tr|A0A0K1EUA5|A0A0K1EUA5_TECGR Heat shock protein 1; Found in the gene: LotjaGi1g1v0083400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11978746..11979731) extracted from Lotus japonicus Gifu genome v1.2.
GTCAACATTAAAATGATTAAATAAAAAGAAAAGTGTAGAAACACGTAGAAAGTAAAAAAAATCTTAAAATGATCAAATAG AAAGAAAAGTTTAGAAACATGTAGAAAGTCCCTATCTCATATCAGCAGAAAACTCCAGAAAATCCCAGGTTCATTAACTT CTCTTCTATATAAAGCTTCACTCGATCTGTTTCCGCTCCACATCAAAACCAGTGACAAACAAAGCTATTCCTTCTACTAA GTTCCAACTTCCAATTTCAATCAAAACCAACGCATTCAACACAACCATGTCTCTGATTCCAAGCTTCTTCGGCGGTCGAC GGAGCAACGTCTTCGACCCTTTCTCCCTAGACACATGGGACCCGTTCGAAGGATTGCCCCTCTCCAATTCCAACCTCCCT TCCTCTGCTCGCGAAACCACCGCCATAGCCAACACCCGCGTGGACTGGAAGGAGACCCCGGAGGCGCACGTGTTCAGCGT CGACCTTCCGGGGCTGAAGAAGGAGGAAGTGAAGGTGGAGGTTGAGGACGGGAAGGTGCTGCAGATAAGCGGGGAGAGAA GCAAGGAGCAGGAGCAGAAGGATGATAAGTGGCACCGCATTGAGCGGAGCTCCGGGAAGTTCATGAGGAGGTTCCGGCTC CCGGAGAATGCTAAGATGGAGCAGGTTAAGGCTGCTATGGAGAATGGGGTGCTCACTGTTACTGTTCCTAAGGAGGAGGA GAAGAAGCCTGAGGTTAAGTCTATTCAGATTTCTGGTTAAATCTGTGTCTCTGGAACGAGTGTGAGGTCAATGTTGTTGT AATAGTGAACTGTCGTATCTTGTGTTTGTTAATGTTGTGTCTATGTATGGGTTTTATGTAAGGCTTTGATCTTGAGGTGA ATGTAGAAGTTTGATATGTATCAATAAAGAGTTATTTCATAAACCAATTAAGAAGCATGTGATCCTTTATCTTTATTCTA AAGTAGAATTCAATCTTACATAAACC
CDS sequence (LotjaGi1g1v0083400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTGATTCCAAGCTTCTTCGGCGGTCGACGGAGCAACGTCTTCGACCCTTTCTCCCTAGACACATGGGACCCGTT CGAAGGATTGCCCCTCTCCAATTCCAACCTCCCTTCCTCTGCTCGCGAAACCACCGCCATAGCCAACACCCGCGTGGACT GGAAGGAGACCCCGGAGGCGCACGTGTTCAGCGTCGACCTTCCGGGGCTGAAGAAGGAGGAAGTGAAGGTGGAGGTTGAG GACGGGAAGGTGCTGCAGATAAGCGGGGAGAGAAGCAAGGAGCAGGAGCAGAAGGATGATAAGTGGCACCGCATTGAGCG GAGCTCCGGGAAGTTCATGAGGAGGTTCCGGCTCCCGGAGAATGCTAAGATGGAGCAGGTTAAGGCTGCTATGGAGAATG GGGTGCTCACTGTTACTGTTCCTAAGGAGGAGGAGAAGAAGCCTGAGGTTAAGTCTATTCAGATTTCTGGTTAA
Protein sequence (LotjaGi1g1v0083400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLIPSFFGGRRSNVFDPFSLDTWDPFEGLPLSNSNLPSSARETTAIANTRVDWKETPEAHVFSVDLPGLKKEEVKVEVE DGKVLQISGERSKEQEQKDDKWHRIERSSGKFMRRFRLPENAKMEQVKAAMENGVLTVTVPKEEEKKPEVKSIQISG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 157 | 157 | 2.4E-87 | – | |
| PANTHER | 1 | 157 | 157 | 2.4E-87 | ||
| Gene3D | 10 | 156 | 147 | 3.5E-49 | ||
| SUPERFAMILY | 19 | 157 | 139 | 7.33E-46 | ||
| ProSiteProfiles | 43 | 157 | 115 | 32.864 | ||
| CDD | 51 | 139 | 89 | 3.10337E-46 | – | |
| Pfam | 53 | 156 | 104 | 3.2E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0083400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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