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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002068
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 70 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.325s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0074429.1
n.a. PREDICTED: 17.9 kDa class II heat shock protein-like [Glycine max] gi|356564017|ref|XP_003550253.1| chr0 28015499 28016888 -
3 domain predictions
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Lj0g3v0082839.1
n.a. class II small heat shock protein Le-HSP17.6 [Arachis hypogaea] gi|194466081|gb|ACF74271.1| chr0 32609928 32610701 -
3 domain predictions
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Lj0g3v0085889.1
n.a. PREDICTED: 17.9 kDa class II heat shock protein-like [Glycine max] gi|356564017|ref|XP_003550253.1| chr0 34500480 34501551 +
3 domain predictions
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Lj0g3v0108079.2
n.a. PREDICTED: 21.7 kDa class VI heat shock protein-like [Glycine max] gi|356543958|ref|XP_003540425.1| chr0 46657401 46659805 -
3 domain predictions
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Lj0g3v0164099.1
n.a. PREDICTED: trichohyalin-like [Cicer arietinum] gi|502178319|ref|XP_004516224.1| chr0 77613306 77616623 -
3 domain predictions
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Lj0g3v0197289.1
n.a. 22.7 kDa class IV heat shock protein [Medicago truncatula] gi|357493537|ref|XP_003617057.1| chr0 96199614 96201400 +
3 domain predictions
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Lj0g3v0235519.1
n.a. PREDICTED: 17.9 kDa class II heat shock protein-like [Glycine max] gi|356564017|ref|XP_003550253.1| chr0 122056288 122057025 +
3 domain predictions
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Lj0g3v0325479.1
n.a. PREDICTED: 17.6 kDa class I heat shock protein-like [Cicer arietinum] gi|502103884|ref|XP_004492385.1| chr0 170069654 170071004 +
3 domain predictions
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Lj0g3v0354739.1
n.a. PREDICTED: 17.9 kDa class II heat shock protein-like [Glycine max] gi|356564017|ref|XP_003550253.1| chr0 186851010 186851747 -
3 domain predictions
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Lj1g3v0244530.1
n.a. PREDICTED: 18.2 kDa class I heat shock protein [Glycine max] gi|356501111|ref|XP_003519372.1| chr1 2373869 2374896 +
3 domain predictions
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Lj1g3v0451230.1
n.a. 16.6 kDa heat shock protein [Medicago truncatula] gi|357477445|ref|XP_003609008.1| chr1 6084490 6085869 -
3 domain predictions
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Lj1g3v1061500.1
n.a. PREDICTED: small heat shock protein, chloroplastic [Glycine max] gi|356509172|ref|XP_003523325.1| chr1 13114637 13116729 +
3 domain predictions
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Lj1g3v1442490.1
n.a. 17.6 kDa class I heat shock protein [Medicago truncatula] gi|357443643|ref|XP_003592099.1| chr1 17345461 17346391 -
3 domain predictions
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Lj1g3v1787650.1
n.a. PREDICTED: 17.9 kDa class II heat shock protein-like [Glycine max] gi|356507036|ref|XP_003522277.1| chr1 21228101 21229094 -
3 domain predictions
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Lj1g3v3404430.1
n.a. n.a. chr1 39266129 39273164 -
3 domain predictions
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Lj1g3v3975730.1
n.a. 15.4 kDa class V heat shock protein [Medicago truncatula] gi|357508747|ref|XP_003624662.1| chr1 46977978 46978928 +
3 domain predictions
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Lj1g3v3978180.1
n.a. PREDICTED: 22.7 kDa class IV heat shock protein-like [Solanum lycopersicum] gi|460380798|ref|XP_004236141.1| chr1 47217207 47218689 -
3 domain predictions
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Lj2g3v0520140.1
n.a. RecName: Full=22.0 kDa class IV heat shock protein; Flags: Precursorgi|18661|emb|CAA44882.1| heat shock protein [Glycine max] gi|232282|sp|P30236.1|HSP41_SOYBN chr2 6899667 6900392 -
3 domain predictions
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Lj2g3v1574130.1
n.a. PREDICTED: LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 3-like [Cicer arietinum] gi|502161818|ref|XP_004512293.1| chr2 25078866 25085822 +
2 domain predictions
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Lj2g3v2926310.1
n.a. 22.0 kDa heat shock protein [Medicago truncatula] gi|357493539|ref|XP_003617058.1| chr2 38211579 38213038 +
3 domain predictions
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Lj2g3v2926320.1
n.a. 22.0 kDa heat shock protein [Medicago truncatula] gi|357493539|ref|XP_003617058.1| chr2 38214598 38216228 +
3 domain predictions
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Lj2g3v3121040.1
n.a. Small heat shock protein C4 [Medicago truncatula] gi|357494367|ref|XP_003617472.1| chr2 40288725 40292621 +
3 domain predictions
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Lj3g3v0807620.1
n.a. n.a. chr3 9706468 9711032 +
2 domain predictions
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Lj3g3v0807630.1
n.a. 17.6 kDa class I heat shock protein [Medicago truncatula] gi|357455709|ref|XP_003598135.1| chr3 9709745 9711838 -
3 domain predictions
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Lj3g3v2188200.1
n.a. PREDICTED: 26.5 kDa heat shock protein, mitochondrial-like [Glycine max] gi|356526211|ref|XP_003531712.1| chr3 27229368 27234658 -
3 domain predictions
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Lj3g3v2576000.1
n.a. PREDICTED: 17.4 kDa class III heat shock protein-like [Glycine max] gi|356520108|ref|XP_003528707.1| chr3 31480442 31481014 -
3 domain predictions
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Lj3g3v3236650.1
n.a. PREDICTED: 18.5 kDa class I heat shock protein-like [Glycine max] gi|356538960|ref|XP_003537968.1| chr3 39868152 39869198 -
3 domain predictions
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Lj3g3v3640130.3
n.a. hsp23 [Medicago sativa] gi|339792764|gb|AEK12766.1| chr3 44369110 44370360 -
3 domain predictions
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Lj5g3v1473480.1
n.a. Heat shock protein-like protein [Medicago truncatula] gi|357441615|ref|XP_003591085.1| chr5 21599368 21601798 -
2 domain predictions
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Lj5g3v1949720.1
n.a. 17.6 kDa class I heat shock protein [Medicago truncatula] gi|357443643|ref|XP_003592099.1| chr5 27457000 27457930 +
3 domain predictions
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Lj6g3v0857610.1
n.a. PREDICTED: small heat shock protein, chloroplastic-like [Cicer arietinum] gi|502128828|ref|XP_004500095.1| chr6 8522179 8523866 -
3 domain predictions
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Lj6g3v1067120.1
n.a. Small heat shock protein C4 [Medicago truncatula] gi|357494367|ref|XP_003617472.1| chr6 12402857 12406515 +
3 domain predictions
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Lj6g3v1878810.1
n.a. PREDICTED: 15.4 kDa class V heat shock protein-like [Glycine max] gi|356555652|ref|XP_003546144.1| chr6 20567619 20568277 +
3 domain predictions
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Lj6g3v2007290.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 27-like [Glycine max] gi|356557709|ref|XP_003547155.1| chr6 23715029 23730982 +
2 domain predictions
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LotjaGi1g1v0037900.1
n.a. Heat shock protein, putative; TAIR: AT1G06460.1 alpha-crystallin domain 32.1; Swiss-Prot: sp|Q4UJB1|HSPC4_RICFE Small heat shock protein C4; TrEMBL-Plants: tr|I3SGI4|I3SGI4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0037900 LjG1.1_chr1 5277626 5283734 +
3 domain predictions
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LotjaGi1g1v0059400.1
n.a. Protein restricted tev movement 2; TAIR: AT2G27140.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D5K211|RTM2A_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|I3T6E1|I3T6E1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0059400 LjG1.1_chr1 8302114 8305198 -
3 domain predictions
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LotjaGi1g1v0059500.1
n.a. 23.2 kDa heat shock protein; TAIR: AT2G27140.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D9UC01|RTM2D_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|I1M7E1|I1M7E1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059500 LjG1.1_chr1 8306889 8308468 -
3 domain predictions
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LotjaGi1g1v0083400.1
n.a. Heat shock protein; TAIR: AT1G53540.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein; TrEMBL-Plants: tr|A0A0K1EUA5|A0A0K1EUA5_TECGR Heat shock protein 1; Found in the gene: LotjaGi1g1v0083400 LjG1.1_chr1 11978746 11979731 -
3 domain predictions
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LotjaGi1g1v0083500.1
n.a. Heat-shock protein, putative; TAIR: AT1G53540.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|P05478|HSP16_SOYBN 18.5 kDa class I heat shock protein; TrEMBL-Plants: tr|A0A1J7HMX6|A0A1J7HMX6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0083500 LjG1.1_chr1 12001288 12002282 +
3 domain predictions
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LotjaGi1g1v0095100.1
n.a. Heat-shock protein, putative; TAIR: AT5G37670.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|Q9FHQ3|HS157_ARATH 15.7 kDa heat shock protein, peroxisomal; TrEMBL-Plants: tr|I3S8Z7|I3S8Z7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0095100 LjG1.1_chr1 14414159 14418644 +
3 domain predictions
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LotjaGi1g1v0139800.1
n.a. Heat shock protein; TAIR: AT1G53540.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein; TrEMBL-Plants: tr|A0A0R0L186|A0A0R0L186_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0139800 LjG1.1_chr1 22934339 22935741 +
3 domain predictions
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LotjaGi1g1v0295200.1
n.a. Small heat shock protein; TAIR: AT4G27670.1 heat shock protein 21; Swiss-Prot: sp|P09886|HS21C_PEA Small heat shock protein, chloroplastic; TrEMBL-Plants: tr|I1KAZ9|I1KAZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0295200 LjG1.1_chr1 71562524 71564754 +
3 domain predictions
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LotjaGi1g1v0369200.1
n.a. Heat-shock protein, putative; TAIR: AT5G12020.1 17.6 kDa class II heat shock protein; Swiss-Prot: sp|P05477|HSP21_SOYBN 17.9 kDa class II heat shock protein; TrEMBL-Plants: tr|A9PA59|A9PA59_POPTR Heat shock protein 17.7; Found in the gene: LotjaGi1g1v0369200 LjG1.1_chr1 84765034 84765507 -
3 domain predictions
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LotjaGi1g1v0369300.1
n.a. Heat shock protein; TAIR: AT5G12020.1 17.6 kDa class II heat shock protein; Swiss-Prot: sp|Q01545|HSP22_IPONI 18.8 kDa class II heat shock protein; TrEMBL-Plants: tr|A0A1J7H3V3|A0A1J7H3V3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0369300 LjG1.1_chr1 84767060 84768138 -
3 domain predictions
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LotjaGi1g1v0570000.1
n.a. AT-rich interactive domain protein; TAIR: AT1G76510.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5; TrEMBL-Plants: tr|G3M3K3|G3M3K3_LOTJA ARID and Hsp20 domains containing protein; Found in the gene: LotjaGi1g1v0570000 LjG1.1_chr1 110285783 110293588 -
3 domain predictions
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LotjaGi1g1v0645700.1
n.a. Protein restricted tev movement 2; TAIR: AT2G27140.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D9UC01|RTM2D_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|G7L0H2|G7L0H2_MEDTR Hsp20/alpha crystallin family protein; Found in the gene: LotjaGi1g1v0645700 LjG1.1_chr1 120270506 120271526 +
3 domain predictions
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LotjaGi1g1v0647300.1
n.a. Heat-shock protein, putative; TAIR: AT4G10250.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|P19244|HSP41_PEA 22.7 kDa class IV heat shock protein; TrEMBL-Plants: tr|A0A199UBI8|A0A199UBI8_MANES Uncharacterized protein; Found in the gene: LotjaGi1g1v0647300 LjG1.1_chr1 120478898 120480146 -
3 domain predictions
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LotjaGi2g1v0180800.1
n.a. Heat shock family protein; TAIR: AT1G54400.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D9UBX6|RTM2B_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|A0A072UAS6|A0A072UAS6_MEDTR Hsp20/alpha crystallin family protein; Found in the gene: LotjaGi2g1v0180800 LjG1.1_chr2 60281838 60286857 +
3 domain predictions
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LotjaGi2g1v0352200_LC.1
n.a. AT-rich interactive domain protein; TAIR: AT2G17410.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3; TrEMBL-Plants: tr|V7CL72|V7CL72_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0352200_LC LjG1.1_chr2 82824402 82832288 +
2 domain predictions
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LotjaGi3g1v0100400.1
n.a. Heat shock family protein; TAIR: AT5G04890.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D9UBX6|RTM2B_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|G7IVB3|G7IVB3_MEDTR Hsp20/alpha crystallin family protein; Found in the gene: LotjaGi3g1v0100400 LjG1.1_chr3 12475757 12479270 +
3 domain predictions
 –