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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0083500 |
| Transcript ID | LotjaGi1g1v0083500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat-shock protein, putative; TAIR: AT1G53540.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|P05478|HSP16_SOYBN 18.5 kDa class I heat shock protein; TrEMBL-Plants: tr|A0A1J7HMX6|A0A1J7HMX6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0083500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12001288..12002282) extracted from Lotus japonicus Gifu genome v1.2.
TTCATCATTCTCCAATGTCCATCACCTAAAAAAACACCCCGCAGAACCCTCTCAACCATTCTTCCCCTCTCTCTGAACCA TCTCGAACAATCCCAAATGACCAAAATACCCTCCCCCTCCAATATATATACCCTCACATTCTCACAAGTCACAACCACCT CAACAAACAAAAAAAACCATCATCAAAAAACAGAGTCAACAAAACCTTCAAGCTATTTCACTCACTCTCAATCTCAACAA CAATGTCGCTGATTCCAAGCTTCTTCGGCAACGGGCGAAGGACCAACGTCTTCGGCCCATTCTCCCTCGAACTATGGGAC CCATTCCAGGACTTCCCGCTGGCAAGAACCACCACCGGAGGTGGCGAGACAGCGGCGTTCGCGAACGCCCGCATTGACTG GAAGGAAACACCGGAGGCACACGTGTTCAAGGCGGACTTGCCTGGAGTGAAGAAGGAGGAGGTGAAGGTGGAGATCGAAG AAGGGAGAGTGCTGCAGATTAGCGGGGAGAGGGTGAAGGAGAAAGAGGATAAGAGTGACACGTGGCATCGTGTTGAGCGG AGCCAAGGGAGCTTCCTCCGCCGGTTTAGGCTGCCGGAGAATGCGAAGGTGGAGGAGGTGAAGGCGGCGATGGAGAATGG GGTGCTTACTGTGACTGTTCCTAAGGAGGAGGTGAAGAAGCCTGATGTTAAGCCCATTCAGATTACTGGTTGAGAAGCCC AATGTCAGGCCCATTTCTCTTGAGCTCTTGCTGGATCACATGTCATGTGGGTGTCTCCTAATAAAAATATAGAAAATGAA ATAAATGTATGTGTGTACCATGTAGTTTTTTTGAAATTTGTGTTATGTAGTTGAGTTGGAGCTATATGTGAGTGACTCAA CTCTATATACTTTGAATGTGTGAGCTTGCTCTATTATATTAATATTTGTAGTCTTATGCAAAGAGTTTATGAATATATAA AAATTTCAAGTTTCTTTTGATTAATTATGACTCAG
CDS sequence (LotjaGi1g1v0083500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGCTGATTCCAAGCTTCTTCGGCAACGGGCGAAGGACCAACGTCTTCGGCCCATTCTCCCTCGAACTATGGGACCC ATTCCAGGACTTCCCGCTGGCAAGAACCACCACCGGAGGTGGCGAGACAGCGGCGTTCGCGAACGCCCGCATTGACTGGA AGGAAACACCGGAGGCACACGTGTTCAAGGCGGACTTGCCTGGAGTGAAGAAGGAGGAGGTGAAGGTGGAGATCGAAGAA GGGAGAGTGCTGCAGATTAGCGGGGAGAGGGTGAAGGAGAAAGAGGATAAGAGTGACACGTGGCATCGTGTTGAGCGGAG CCAAGGGAGCTTCCTCCGCCGGTTTAGGCTGCCGGAGAATGCGAAGGTGGAGGAGGTGAAGGCGGCGATGGAGAATGGGG TGCTTACTGTGACTGTTCCTAAGGAGGAGGTGAAGAAGCCTGATGTTAAGCCCATTCAGATTACTGGTTGA
Protein sequence (LotjaGi1g1v0083500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLIPSFFGNGRRTNVFGPFSLELWDPFQDFPLARTTTGGGETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEIEE GRVLQISGERVKEKEDKSDTWHRVERSQGSFLRRFRLPENAKVEEVKAAMENGVLTVTVPKEEVKKPDVKPIQITG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 156 | 156 | 9.4E-81 | – | |
| PANTHER | 1 | 156 | 156 | 9.4E-81 | ||
| Gene3D | 10 | 155 | 146 | 1.3E-46 | ||
| SUPERFAMILY | 25 | 155 | 131 | 1.29E-43 | ||
| ProSiteProfiles | 42 | 156 | 115 | 30.393 | ||
| CDD | 50 | 141 | 92 | 1.59345E-47 | – | |
| Pfam | 52 | 154 | 103 | 3.3E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0083500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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