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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0091900 |
| Transcript ID | LotjaGi1g1v0091900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT2G20170.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|Q5JD26|THIC_THEKO Phosphomethylpyrimidine synthase; TrEMBL-Plants: tr|K7M6Q5|K7M6Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0091900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:13448746..13450889) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTACAAGATAACTGTGAAAATGGTCCACATATTGTTTTTGATCTTCTGCCTGGTGGCTAGCAATATTAGCCACAGAG TTGAGGGCATGCGTCCAGCAGAAGAAAATTTGGAGTTGGAAAGACAACTAAAACATATTAATAAGCCTCCTATTGTGACT ATTAATGTATTTTATAGTCTTCTTATGTATTTACAAGTTTTATTTTGTTCAATGTGATCTCACTGGATGTTTAATATTTT TATTTTCTTTGGATCTCGGTTTCAATAGACAACTTTGGGGTACATTGTTGATTGCGTTGATATTAAGAAGCAACCCGCCT TTGACCACCCTTTACTAAAGAATCATAAGTTACAGGTACACTCATTTTGATTATGTTTAACATCTAGTAATTTTTTATTT ATTGCATTTCCCCATTAAATGTTCATTTTCTTTTCAATAACGCTAGCTTAAGCCAAGCTTTCAAAATATAATGGGAAAAG CTGATGAGAAAAATTCAAGCGCTAAACTTATTGGATTTGGGCTTGAGAAAAATCAATGTCCAGTTGGAACTGTTCCTATT CGGAGGACAACAAAAGAAGATCTCATACGAGGAAAATCACTATTTAACTATCCCATTTTGACAACAGGCCAACCAGGCAC TCATGTAAGTTTTCCCCGGTACAAGCTTAGTTTATTTCTACAAGTCACATCTAATGTTTCAATTTTGGAATATTTATGCA AAACTTTGAATTTATAGATTGCCGAAGTAACTTATGGACCATTCGGATTTAAACGTTTTTATGGAGCTAGTGGATCTGGT AGCCTTTGGAATCCAAAAGTTAACCATGATCAAACAAGCAACTCTCATATGTGGGTTCAAAATGGACAGGGAGATGGTAC TAATAAAATCACTGTTGGGTGGCATGTGAGTTTTAATTTACCTATAATGAAAATATTTTATTTTTTGTTCTAAAGTTATT TAATTTATGTATTGACTCAAAACATTATACATTATATCATTTACATTAATGTCAGGTGTCTCCAAAATTATACGGTGATT ATGAAACTCACATTTATACAACATGGACGGTAAGAATATGATTACTTATATTTTGTATCTTTACTTACTTCGTACGTTAA TATACTCGATTTGTTCATAAAATGGGGGTCTTGTTAAAATTAGTTTTTTATTATTCAAAAAATTAAATCTAAATTTTATT TTAAATTTGAGGTTACAAAAAGAACATGTCTTTCATTTATTTTGGAGTTAACTAACATGAAGTAAAAAAATGACAGTCTG ACAATTTCAAGAGGACTGGATGCTACAATCTTCAATGTCCAGGTTTCGTTCAGATAGACAGACAACTTCATGTTGGTATA GCGACTAAAACATCTACCTACGGTGGAGATACCGAAGAGCTCGACTTTTCTCTTTCACAGGTATGCTTGTGCTATAAATT TTTCGTAAAATGTGTGTTTAAATTATTAGTTTAATTTGAAAGCAGAAATTCTTCTTTAAACAATTATGTAGTCAAAATCA CATTAAGCGTAACAAACCATGCTCTAAGGAAGAGAATACTATAAACATGTTATGAAATAAATTTATATGCTTCGAAAAAT AAATATAATGACAATTCTTAAGTAATAATGTGTGGAGGTTGATGATAATATATTCATAATTTTTTTTAAATGTTTTCAGG ACCCAAGCACACAAAATTGGTGGGTGACCATCGAACATAAGAACATTGGATATTTTCCAGCAGCTTTATTTACCAACATG AAGTGGGTTGATAGAGTAGGATGGGGTGGGACAACCACAACTCCTGCGGGTACTCCTAGTCCTCCAATGGGATCTGGGCA TTTTCCTGACCGTATCTATGAACATACATGTTATTTTCGATATATGTCATATAAGGATGAATCAAGAAAGGATTATGGAC CTGAAGAAAATGTGGCAAAGTCATTCTCAGACAAACCTAATTGCTTTGGTGTTGATTACTACGGGTATAAAGGATCACAA GTTGGATTTTCCGTCCAATTTGGAGGACCTGGTGGTTTATGTGGCAATTGATTAATAGTTTTTGTCAAGCTTTAATTTAA TATTAAAAATAAAATAAAATAAATATTTTTTCTTAAAGAATTTTTTTTTCTAATAATATATGCA
CDS sequence (LotjaGi1g1v0091900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCCACATATTGTTTTTGATCTTCTGCCTGGTGGCTAGCAATATTAGCCACAGAGTTGAGGGCATGCGTCCAGCAGA AGAAAATTTGGAGTTGGAAAGACAACTAAAACATATTAATAAGCCTCCTATTGTGACTATTAATACAACTTTGGGGTACA TTGTTGATTGCGTTGATATTAAGAAGCAACCCGCCTTTGACCACCCTTTACTAAAGAATCATAAGTTACAGCTTAAGCCA AGCTTTCAAAATATAATGGGAAAAGCTGATGAGAAAAATTCAAGCGCTAAACTTATTGGATTTGGGCTTGAGAAAAATCA ATGTCCAGTTGGAACTGTTCCTATTCGGAGGACAACAAAAGAAGATCTCATACGAGGAAAATCACTATTTAACTATCCCA TTTTGACAACAGGCCAACCAGGCACTCATATTGCCGAAGTAACTTATGGACCATTCGGATTTAAACGTTTTTATGGAGCT AGTGGATCTGGTAGCCTTTGGAATCCAAAAGTTAACCATGATCAAACAAGCAACTCTCATATGTGGGTTCAAAATGGACA GGGAGATGGTACTAATAAAATCACTGTTGGGTGGCATGTGTCTCCAAAATTATACGGTGATTATGAAACTCACATTTATA CAACATGGACGTCTGACAATTTCAAGAGGACTGGATGCTACAATCTTCAATGTCCAGGTTTCGTTCAGATAGACAGACAA CTTCATGTTGGTATAGCGACTAAAACATCTACCTACGGTGGAGATACCGAAGAGCTCGACTTTTCTCTTTCACAGGACCC AAGCACACAAAATTGGTGGGTGACCATCGAACATAAGAACATTGGATATTTTCCAGCAGCTTTATTTACCAACATGAAGT GGGTTGATAGAGTAGGATGGGGTGGGACAACCACAACTCCTGCGGGTACTCCTAGTCCTCCAATGGGATCTGGGCATTTT CCTGACCGTATCTATGAACATACATGTTATTTTCGATATATGTCATATAAGGATGAATCAAGAAAGGATTATGGACCTGA AGAAAATGTGGCAAAGTCATTCTCAGACAAACCTAATTGCTTTGGTGTTGATTACTACGGGTATAAAGGATCACAAGTTG GATTTTCCGTCCAATTTGGAGGACCTGGTGGTTTATGTGGCAATTGA
Protein sequence (LotjaGi1g1v0091900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVHILFLIFCLVASNISHRVEGMRPAEENLELERQLKHINKPPIVTINTTLGYIVDCVDIKKQPAFDHPLLKNHKLQLKP SFQNIMGKADEKNSSAKLIGFGLEKNQCPVGTVPIRRTTKEDLIRGKSLFNYPILTTGQPGTHIAEVTYGPFGFKRFYGA SGSGSLWNPKVNHDQTSNSHMWVQNGQGDGTNKITVGWHVSPKLYGDYETHIYTTWTSDNFKRTGCYNLQCPGFVQIDRQ LHVGIATKTSTYGGDTEELDFSLSQDPSTQNWWVTIEHKNIGYFPAALFTNMKWVDRVGWGGTTTTPAGTPSPPMGSGHF PDRIYEHTCYFRYMSYKDESRKDYGPEENVAKSFSDKPNCFGVDYYGYKGSQVGFSVQFGGPGGLCGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 2 | 386 | 385 | 7.1E-162 | – | |
| PANTHER | 2 | 386 | 385 | 7.1E-162 | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 388 | 366 | - | – | |
| Pfam | 46 | 132 | 87 | 9.1E-26 | ||
| Pfam | 165 | 382 | 218 | 6.7E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0091900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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