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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0093000 |
| Transcript ID | LotjaGi1g1v0093000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Double-stranded RNA binding protein, putative; TAIR: AT1G09700.1 dsRNA-binding domain-like superfamily protein; Swiss-Prot: sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3; TrEMBL-Plants: tr|V7B8H0|V7B8H0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0093000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:13642567..13648449) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAAGAATTTCAAAGGACCTCCAAAACCCAACATACACAAAAAGGAAAGTTTCTTCTTCCACATTGTCACTGATGGCT TCAACTTCAGCTGAATCTGCTCCTCCACCACCCATTTCATCTCCTCAACCCCCTGCTCCTGCTTCTTCTTCCACTACCCG TAAGCTCTCTCTATTTCTTCATAGTCTTTTGCAATTTTGAGCTATATTATTATTATTACCCCTAAACATATTTCACCTGA TTTTTTTATTTTTCACGTGAATATTAAGCTATGTTAATAGTTATTACTTAATAGTTAATATCCCTGCTGTTACTTTGGCT CAACGTTTTACAATATTAAAATTTCACATGACTTTTTTGATTAAAGGATAAAATAGGAATACAGATTGCGTTTTTGTAAT ACACAACTAATGGGTGGGAGTTGGGTTTGGCACCCCACCTATGGGGCTTGGCACCCCACTTTATCAAATACGGAATTTAA AATTCCGTATTCTCCCTATTGAATACGGAACTTAAAATTCCGTACTGTATTTAAGCATGCGTGTCACATTTTCAACCACT CATTATATACTAAAACAGATACGGAATTTTATTTTCCGTATTGATACGGAACTTTAAATTCCGTATTTAATAAAGTGGGG TGCAAAGCCTAAGGGGTGGGGCACCAAACTCAATTCCCCTAATGGGTCCTGGAAATTTTTGATATGTTGAGTTTTACTTG GCCTGTGCATATTTTCATGGTGAACTCTAATTCCCTAACATTGTGGATTGTTTATCAATTAGAGGATAAAATAGTAATAA AGAATCACAAGTAATGGGTCCTGGAAATTTTTGATATCTTGAGTATTTATGGCATATGTATGTTTTCATGGTGAACTCTA ACATTGTGAATTGTTCTCATGGGGTTTTGAAGGACCCTTGTCATTCAGATCTCAGTTACATATCTTTGCCCAGAGAGCCA AAGTTGGAGGTCCAGTGTATCAAACTGTGAACGAGGGAACTCAACATGACCCGAGGTTCCGGTCCACTGTGTCCATGGGT GGGAAGAGCTACACTACCCAGTTCTCTTATTCTCGTAGAAGAGTTGCTGAAGAAGAAGCTGCTAGGCTCGCCGTGGAGAG CCTCCCCGGATACATTACAGATGAAGCACGCCCTCTTCTCGGTGAGGTGTGTTGTGAGAGTTTTTGATAGTTTGGAAATG CAGTAGTAGTTCGAGAATTGATCGGTGGAAAATTCGATAATTGTTGATGAATAAAAGATACTGAATCAGTTCTTACAACA AGTAGTGAGAATGATCACTTATATACAAGCTTAGTAACCAACTTTCAGTTATGTTACAATCTGAATACTAAGTTACTAAC TAATATTTACAACAGAATCTACTAACTAATAACAGAAATTACTAACTCTGTTAATAGTGGTTGCAGTAGGTCCAGGTTCA GCTCTTGACCTGTGTACCAAATTTTGTTGACTATTTTTGAGCTAGTGTTTGTGATAATGTGTTGCAGAAGTTTTTGACAC TGAGCTCTGCAATATATTAGTTTTGTTTTATGGATGTTTACTCACATCTTGTTTACAAATATGCTAGTGAAAGTGCTTTG TAATTAGAAGAATTTGATTTATTTTTGCACTTAGTCTGCTATCCTCCCTCGGATTATGTTTTACTTGGTTCTTTCTAATA CAGTTCCTGGGTCAGTCATGAAAAATGCATTGCCTAAAGATCCTAGATGAGTAAATTTTCTTGACTCGTGTTTGCCATGA TGAACCTTGTATGTATGAGCAAATTTTATGCAAGAAATTTAAATATATTTTTGCAAGTTATTTTATTGTTGCACATATGT CTCTCTCTTACAATGAGTCTTATTTGAAAATCTTCATGTAACCTATCACGGAGCCTTTTAATTTTAAGGAAGCATGGAAA TTGTATCAAATAGTTTCACCTGTTTGCTTTTTCGTGCAAGGTTTTTGAAGTTTTATCCTAATGAAGTATCGTTATAAATT GTTGTCCTGTGAACTAGAGTTTCCGTGCTTCTTTTTCCTTCTTTGTTGAAGTTTTGAAACTAATCCAGTGTAGCATGAAG TAGTCATGTTTAAGTGTTTAACTCTATGGGCCTGGGAAAACTTGGAAAGTATCTCGAGATACATGCTGACTGCTGGTGAA ATATCTTATTACTGACATATGCGAAAAAATAGAAAGCTAGTGAAATAGTTCCATTCTTCATGATGCTTTATTTGGATTTT TTGTTGCTTCAATTGTCTTGGTCTTGTATTATCATCTTATACTGTTTTTCTTTTAAGAATCCTTATTAGACTTCTTGTTG TCATCATCTACAGATTTTTTCATTATGTAAATCTATTGTGAATGAGTATGCCACAAAGCTGAGTCTAGCACTACCTACGT ACAACACCCTTCAACAAGAAGGGGTGGTTCCTTCTTTTACATCTTCTTTGGTTTTCAACGGTTCAACTTATGTGGGTGAA GCAGCTAAAACCAAAAAGGATGCTGATCTGTTAGCAGCTTGTGCTTTTATTCTTTCAAATCTGGGTATGCTTTTATTTTA TTTTTATATATCTTATACTAAATTTTTTAAATAGTTTCTTGTGAACTGTGTGTTTGTCTACTAAAGAGGTATTTAATGCA GGAAACTCTGGCCCTGGAACGATGCTCTTTCATATTATTAAGGCTAAACATAATGCAATCAAAAGAAATGATTTGCAACC TATTTATGCTAGTGGTGTGTCACCATCACCCATAGCAAATCCTGGACATACCTCCGATATGCCTGATCATAAAGATAAGG AAGTTGCAGGTCCTGTTTCTCATGGAAAAGTTGCTGAAGAAGAAGCTGCCAGGCTTGCTGTGGACAGCCTCACTAGAAAC ATTACAGATGAAGGACACTCTCTTCTTGGTGAGGTGTGTAGTGACAGTTGTTGACAGTAGTTTCAGACTTTCAGTAGGTC CAGATTTAGCTCACTGACCTTTTTACCAATTGTTGTTGATTAATTTTGAGCCAGTGTATGTTGATAATGTGTTGCAAAAG TTTTTGACACTGAACTCTGCAATATATTAGGCTTATTTTATGGATGGTTTACTCACATCCATTTTGCAAATATGCCAGTG AAAGTCCTTTGTAATTAGAAGAGAATTGATTTATTTTTTGCATTTAGTCTACTATCCTCCCTCAGATTAAGTTTTTCTTG GTTCTTTGTTATAAAATTTCTCAGTCTGTCATGAAAAATGTATTGTCTAAAGATCTGATATAAGTAAATTTTCTTGACTC GTGTTTGCCAAGATGAACCTTGTATATAACTATAAATGAGTAATTTTTAATGCAAGAAATTAGAACCCATTTTTTCAAGT TATTTTATTGTTGTATATATCATATATGTCTCTCTTGTAATGGTAAGAGTTATTTTGAAAGTCATCATGTAACCTATCAC AGAGCCTTTTAATTTTAAGGAAGCAAGGAGGTTGTATCATATAGTTTCACCTGTTTGCTTTATAGTATAAGTATTTTAAT GTTTTATCCTAAAGACGTATCTTTATAACTTCTAAATTTTGTTGCCCATGGAACTAGAATTTTCATGCTTTTTTTGCCTG CTTTGTTGAAGTTTTGAAACTATGTGTAGCATGAAGTAATCATGCTTAACCCTATGGGCTTGGGAAAACGTGAAAATAGT CTTGAAATAAATGTTGACTCCTGGTGAAATCACTTATTAGTGATTACTACTGACTTGGGAAAAAATATAAAGCTGGTGGT GAAATAGCACTAATCTTAATGATGCTTTATTTGGACTTTTGCTGGCTCAATTTGTCTTGGTCTTGTATTATCATCTTTAT ACTATTTTTGTTTGAAGAGTCTTCATAAGACTTGCTGTCATCATCTTCCAGATTTTTTCATTATGCAAAGCTATTGTGAA TGAGTATGCCGCAAAGCTGAATCTACAAATACCTACATACAACACTGTTCAACAAGAAGGGCCACTTCCTATTTTTATAT GTTCTTTGGTTTTCGATGGTTCAACTTATGTGGGTGAAGCAGCTAAAACCAAAAAGGATGCTGAGCATTTAGCAGCTCGT GCCGTTATTCTTTCAAAGCTGGGTATGTTTTTATCTTATATATCTTATACTACAATTTTTAAATAGTTTCTAGTGAGCTG TTTGTTTGTCTTCTAAAGAAGTATTCAATGCAGGTAACTCTGGCTCTGAAACAATATTCTTTCAGATGATTAAGGAAAAA TATAATGCAATCAAAAGAAATGACTCACAACCTATTTATGTTACTGGTGTATCACCGCCACCGATAGAAAATCCTGGTCT TTCCTCCGATAAGGAAGTTGCACGTTCTGTTGTTGAATCTAGTAGGCTGCTTTCCTCATGTCATGAACTTCAGGGGCCAG CTGTGTCACTTCAACCAGGATCAACACTTCCTATTAACTCTGGTTTATGTTCAAAAAAGAGGCGAATGAACGAGGAGAAG GCTAATAAAAACCTCGTTTGGAATCTCCGTAAGTATAATATCTCATTTCTGTATTTTATGATGTATTTCTTTTGCTTCTT TTGTTATATTTTTCTTCACTGTGCAGCTTTCTTTACACAGTATAGTTGGGGTTCACTTCTCAAATGTCTTGAAGTCTGGG GAGACATAGTTGATTGAAAATGGTAGTTTTGGTAGATTGTAAGGCCACCAAAAGTCTCATAGCAACTGAATTAGTAAAGG AGCTGAAATTACCACTGACATAAACTTCTTATTGCGTGGAATTAGGGGATGGGCACAAGATTAAATGCTATGGAATGTGT CAAGGAGTTACATTGGTGTCCCCAGACACGAAGATCAAACAGTATTTCTTCCTTTTTGGATTGGGAAGAGCTGATTAGGA GTTGGCCCTTGATTGGCTAGTCACTCAAAAAGTAACTTTTAAGCTAAACTAGAATATGAAGTCTATCAAACAGCTTCTAC TTTATCTTTAAACCTTTTATTTAGAGCTTTTACTTAAAAAATAGTTTTTTAAGTTCAAAAAAACCAGGGTCAAATGTTTC CTTAGTCAATTCCCACCGAGGACAACTTATAACGAAGTAATAAGCAAATGACTGTGGATATATAATTAATTAATTAATTC CTGTATACTTCTCCTACTAAAGAAAAATCATTCATTTTGCAATCTGTTTGAGATCATCCATGTTTCATGTGAACAATTGG GGTAATGGCACATGGAATGAGGAATACTTAGTGGCTATATACTGTGACTCAACTTAAGCAGGCTAAGTACATGTAAAAAA TGACTGTGAATATTATATAATGAGGAATTTAGTGGCTATATACTGTGACTCTACTTAAGCAAGCTAAGTGAATGTATTTG TTTGTGTGAAGGCAAGGCTTTGTTTTAACATGTGGATGTGTGTCTTATGATTAATTCGATGCTCTGTTCTGTTGCGAGAA TTTGCAGGTTACCTGCTGGATTTTTCATATGGTACAAGTCCATCCTTGCTCAGCAGCACAGCAACAATGTGGACATGTGA TGGAATTCTTTTACATGGGGAAAAATGTAAAAACTAGCTCGTGGATGAATATCTCATTCAAGTTCCTTGTTGTGAATGTA CTTAAATCCTTGTTCAGGGGCTATTGTTTTTCATTATCAACTTATCCAGAACTGGGTTTTAAACTTTGAGAATGTACAGA TTTACTCTCGAGGACCAGGATCCTAGCTGGCACAAGTACGGTACTACTTTTTATCTATTAAAATGGATTTACCTATCTTA GATTATGGTTCCTTTTTTGAGTTAATGGTGAATCGGTGATTGATAGTGGCTCATTTTGGATTATGGTTTCTGCTGACCAT GGTGATTTTCAAAATTTTCCCAATCATGGTTATGTAAGGATGC
CDS sequence (LotjaGi1g1v0093000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAACTTCAGCTGAATCTGCTCCTCCACCACCCATTTCATCTCCTCAACCCCCTGCTCCTGCTTCTTCTTCCAC TACCCGACCCTTGTCATTCAGATCTCAGTTACATATCTTTGCCCAGAGAGCCAAAGTTGGAGGTCCAGTGTATCAAACTG TGAACGAGGGAACTCAACATGACCCGAGGTTCCGGTCCACTGTGTCCATGGGTGGGAAGAGCTACACTACCCAGTTCTCT TATTCTCGTAGAAGAGTTGCTGAAGAAGAAGCTGCTAGGCTCGCCGTGGAGAGCCTCCCCGGATACATTACAGATGAAGC ACGCCCTCTTCTCGGTGAGATTTTTTCATTATGTAAATCTATTGTGAATGAGTATGCCACAAAGCTGAGTCTAGCACTAC CTACGTACAACACCCTTCAACAAGAAGGGGTGGTTCCTTCTTTTACATCTTCTTTGGTTTTCAACGGTTCAACTTATGTG GGTGAAGCAGCTAAAACCAAAAAGGATGCTGATCTGTTAGCAGCTTGTGCTTTTATTCTTTCAAATCTGGGAAACTCTGG CCCTGGAACGATGCTCTTTCATATTATTAAGGCTAAACATAATGCAATCAAAAGAAATGATTTGCAACCTATTTATGCTA GTGGTGTGTCACCATCACCCATAGCAAATCCTGGACATACCTCCGATATGCCTGATCATAAAGATAAGGAAGTTGCAGGT CCTGTTTCTCATGGAAAAGTTGCTGAAGAAGAAGCTGCCAGGCTTGCTGTGGACAGCCTCACTAGAAACATTACAGATGA AGGACACTCTCTTCTTGGTGAGATTTTTTCATTATGCAAAGCTATTGTGAATGAGTATGCCGCAAAGCTGAATCTACAAA TACCTACATACAACACTGTTCAACAAGAAGGGCCACTTCCTATTTTTATATGTTCTTTGGTTTTCGATGGTTCAACTTAT GTGGGTGAAGCAGCTAAAACCAAAAAGGATGCTGAGCATTTAGCAGCTCGTGCCGTTATTCTTTCAAAGCTGGGTAACTC TGGCTCTGAAACAATATTCTTTCAGATGATTAAGGAAAAATATAATGCAATCAAAAGAAATGACTCACAACCTATTTATG TTACTGGTGTATCACCGCCACCGATAGAAAATCCTGGTCTTTCCTCCGATAAGGAAGTTGCACGTTCTGTTGTTGAATCT AGTAGGCTGCTTTCCTCATGTCATGAACTTCAGGGGCCAGCTGTGTCACTTCAACCAGGATCAACACTTCCTATTAACTC TGGTTTATGTTCAAAAAAGAGGCGAATGAACGAGGAGAAGGCTAATAAAAACCTCGTTTGGAATCTCCGTAAGTATAATA TCTCATTTCTGTATTTTATGATGTATTTCTTTTGCTTCTTTTGTTATATTTTTCTTCACTGTGCAGCTTTCTTTACACAG TATAGTTGGGGTTCACTTCTCAAATGTCTTGAAGTCTGGGGAGACATAGTTGATTGA
Protein sequence (LotjaGi1g1v0093000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTSAESAPPPPISSPQPPAPASSSTTRPLSFRSQLHIFAQRAKVGGPVYQTVNEGTQHDPRFRSTVSMGGKSYTTQFS YSRRRVAEEEAARLAVESLPGYITDEARPLLGEIFSLCKSIVNEYATKLSLALPTYNTLQQEGVVPSFTSSLVFNGSTYV GEAAKTKKDADLLAACAFILSNLGNSGPGTMLFHIIKAKHNAIKRNDLQPIYASGVSPSPIANPGHTSDMPDHKDKEVAG PVSHGKVAEEEAARLAVDSLTRNITDEGHSLLGEIFSLCKAIVNEYAAKLNLQIPTYNTVQQEGPLPIFICSLVFDGSTY VGEAAKTKKDAEHLAARAVILSKLGNSGSETIFFQMIKEKYNAIKRNDSQPIYVTGVSPPPIENPGLSSDKEVARSVVES SRLLSSCHELQGPAVSLQPGSTLPINSGLCSKKRRMNEEKANKNLVWNLRKYNISFLYFMMYFFCFFCYIFLHCAAFFTQ YSWGSLLKCLEVWGDIVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 455 | 455 | - | – | |
| MobiDBLite | 10 | 24 | 15 | - | – | |
| PANTHER | 11 | 237 | 227 | 8.6E-118 | – | |
| PANTHER | 11 | 237 | 227 | 8.6E-118 | – | |
| Gene3D | 22 | 101 | 80 | 1.0E-15 | – | |
| SUPERFAMILY | 31 | 107 | 77 | 9.76E-16 | – | |
| ProSiteProfiles | 32 | 101 | 70 | 12.354 | ||
| SMART | 33 | 100 | 68 | 1.1E-8 | ||
| Pfam | 34 | 99 | 66 | 1.1E-6 | ||
| CDD | 35 | 99 | 65 | 5.03666E-10 | ||
| Gene3D | 115 | 181 | 67 | 2.2E-12 | – | |
| SMART | 118 | 183 | 66 | 2.4E-4 | ||
| CDD | 119 | 181 | 63 | 2.00108E-9 | ||
| Pfam | 119 | 175 | 57 | 3.5E-5 | ||
| SUPERFAMILY | 119 | 179 | 61 | 1.65E-8 | – | |
| PANTHER | 243 | 368 | 126 | 8.6E-118 | – | |
| PANTHER | 243 | 368 | 126 | 8.6E-118 | – | |
| Gene3D | 276 | 342 | 67 | 1.1E-16 | – | |
| SMART | 279 | 344 | 66 | 4.4E-12 | ||
| Pfam | 280 | 340 | 61 | 5.7E-9 | ||
| SUPERFAMILY | 280 | 341 | 62 | 5.13E-12 | – | |
| CDD | 280 | 342 | 63 | 1.66698E-13 | ||
| TMHMM | 456 | 478 | 23 | - | – | |
| Phobius | 456 | 478 | 23 | - | – | |
| Phobius | 479 | 498 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0093000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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