Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0093700 |
| Transcript ID | LotjaGi1g1v0093700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase (DUF239); TAIR: AT2G20170.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|A1WHB4|KUP_VEREI Probable potassium transport system protein kup; TrEMBL-Plants: tr|V7B7T8|V7B7T8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0093700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:13816155..13818319) extracted from Lotus japonicus Gifu genome v1.2.
TTATATTTGACAAGATAACTGTGAAAATGATTTATATATTATTTTTTATCTTCTACTTGGTGGCTAGCAATACTAACCAC AAAGTTGAGTGCATGCGAAGTGAACTGGAGGAAGATATGGAGCTGGAAAGACAACTAAAACATATTAACAAGCCTCCTAT CAAAACTATTCATGTATTTCATTACATTCTTATATATTGTGGGATTATTTTTATTATTTGTGATCTTATCAGATGTTTAA TATTTTTAAATTATTCTTTTTGAATTTTGATTTCAACAGACAAAGTTTGGGTACATTGTTGATTGTGTCGATATTGGGAA GCAACCGGCCTTTGATCATCCTTTATTAAAGAATCATAAGTTGCAGGTACACTCATTTTAAATTATTCAAAATATGTTTA ACATCTAGTTACATTTTATTGGTTACATTTCCCAATTTAATGTTCATTTTCTTTTTCTTAATGTAGAGGAAGCCAAGCTT TCAAAAAACAATGAGAACAACTAATGAGAAAAATTCAAGTGCTAAACCTATTGGATTTGGGCTTGAGAAAAATCAATGTC CAATTGGAACTGTTCCTATTAAAAGGATAACAAAAGAAGATCTCATACGAGAAAAATTATTATTTAAAAATTACATTTGG ACACCAAAATCACCGCGTAGCCATGTAAGTTTTCTCCCATATAACTCTGTTCAATTGTCAGCAGTTTATTTCTATAAATC ACATCTAATATTTCAATTTTGGAATAATTATGTGAATCATTGAATTATAGTTTGCAGAAGCAACTTTTGGACCATTTGGA TTTAGACGTTTTTATGGAGCAAGTGGAAAGACTAGCATTTGGAACCTAAAAGTTAACCATGATCAATCAAGCTCATCTCA TATGTGGATTCAAAACGGACAAGGAGATGATACTAATAAAATCACTGTTGGATGGCATGTGAGTACAAGTTAACCTAAAA TGACCATATTTTTTCGTTTTGAAATTAATTAATGTGTGTATGGCTCATTAACCCTATATACATTATATCCTTTACATTAA TTTCAGGTGTCCCCTCAATTATACAACGATTATCACCCTCACGTTTACACAACATGGACAGTAAGAACATACTTAAAGTG TTGGTCTTATTAAAATAGTTTTTTGTTTATTAATCAAGAAAAAAAGTAATCGAAATTTTAGCTTACATTTGAGGTTACAT TAAAGAGCATGTCTTTTGTTTCTTGGAAATTTAACCTAAAATTGAAAAAAAAAATGACAGTCAGACAATTTCAAGAGAAC TGGATGCTTCAATCTTCATTGTCCAGGTTTTGTTCAAATAGACAGGAAAAAGGTTATCGGTGGGACAGCTTACACTTCTA TCTACGGTGGACTAGTTAGCGATTTGCAAGTTACTCTTTCACAGGTCATGTTCGTGTATTCATAATTTTCATAAAAAATG TGTTCACATGATTAGTTTTATTTGTATATATATATATATATATATATATATATATATATATATATGTTATTAAAGACTAT TTAGTTATGTGAGCCGTCTTTTGTATCGTTAAAAAATTGCTTGCTGAATTCTCATTTGATGTTTAGATTGGATGAAATGG TCTTTTATCAAAAGACTAAAATTTTATGTACTTAATGAATAACAAACTCTTAAACAAAAATAATTACAAGTCTTAAGTAT AAATTGGTGATAATATATATATATATATATATATATATATTAATAAAATTTTATTGATGCTTTCAGGACCCCGAAACACA AAATTGGTGGTTGATTAGCGATGGTACAAATGTTGGATATTTTCCAGCATCTCTATTCACCAACATGAAGTGGGCTAATC AAGTGGGATGGGGTGGGGGAACCACAACTCCTGTAGGTACTCTTAGTCCTCCTATGGGATCTGGACACTTTCCCGACAAC AGCTTTAATCATGCTTGTTATTTTGATCGTTTGGCATACACTGATGAATCTAGAAAGGATTATGGACCTGGAACAGCAGT GGTGAAGTCATTCACAGACCAACCTAAATGCTATGGTGTTAATTACTACGGGAATTTGCAAGGGACAGCTGGATTTACTC TCAAATTTGGAGGACCAGGTGGTTCTTGTGGAAATTGATTAATATTTTTGTCAAGCTTTGATTTAAGCTAAAAATTAAAA TAAAG
CDS sequence (LotjaGi1g1v0093700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTATATATTATTTTTTATCTTCTACTTGGTGGCTAGCAATACTAACCACAAAGTTGAGTGCATGCGAAGTGAACT GGAGGAAGATATGGAGCTGGAAAGACAACTAAAACATATTAACAAGCCTCCTATCAAAACTATTCATACAAAGTTTGGGT ACATTGTTGATTGTGTCGATATTGGGAAGCAACCGGCCTTTGATCATCCTTTATTAAAGAATCATAAGTTGCAGAGGAAG CCAAGCTTTCAAAAAACAATGAGAACAACTAATGAGAAAAATTCAAGTGCTAAACCTATTGGATTTGGGCTTGAGAAAAA TCAATGTCCAATTGGAACTGTTCCTATTAAAAGGATAACAAAAGAAGATCTCATACGAGAAAAATTATTATTTAAAAATT ACATTTGGACACCAAAATCACCGCGTAGCCATTTTGCAGAAGCAACTTTTGGACCATTTGGATTTAGACGTTTTTATGGA GCAAGTGGAAAGACTAGCATTTGGAACCTAAAAGTTAACCATGATCAATCAAGCTCATCTCATATGTGGATTCAAAACGG ACAAGGAGATGATACTAATAAAATCACTGTTGGATGGCATGTGTCCCCTCAATTATACAACGATTATCACCCTCACGTTT ACACAACATGGACATCAGACAATTTCAAGAGAACTGGATGCTTCAATCTTCATTGTCCAGGTTTTGTTCAAATAGACAGG AAAAAGGTTATCGGTGGGACAGCTTACACTTCTATCTACGGTGGACTAGTTAGCGATTTGCAAGTTACTCTTTCACAGGA CCCCGAAACACAAAATTGGTGGTTGATTAGCGATGGTACAAATGTTGGATATTTTCCAGCATCTCTATTCACCAACATGA AGTGGGCTAATCAAGTGGGATGGGGTGGGGGAACCACAACTCCTGTAGGTACTCTTAGTCCTCCTATGGGATCTGGACAC TTTCCCGACAACAGCTTTAATCATGCTTGTTATTTTGATCGTTTGGCATACACTGATGAATCTAGAAAGGATTATGGACC TGGAACAGCAGTGGTGAAGTCATTCACAGACCAACCTAAATGCTATGGTGTTAATTACTACGGGAATTTGCAAGGGACAG CTGGATTTACTCTCAAATTTGGAGGACCAGGTGGTTCTTGTGGAAATTGA
Protein sequence (LotjaGi1g1v0093700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIYILFFIFYLVASNTNHKVECMRSELEEDMELERQLKHINKPPIKTIHTKFGYIVDCVDIGKQPAFDHPLLKNHKLQRK PSFQKTMRTTNEKNSSAKPIGFGLEKNQCPIGTVPIKRITKEDLIREKLLFKNYIWTPKSPRSHFAEATFGPFGFRRFYG ASGKTSIWNLKVNHDQSSSSHMWIQNGQGDDTNKITVGWHVSPQLYNDYHPHVYTTWTSDNFKRTGCFNLHCPGFVQIDR KKVIGGTAYTSIYGGLVSDLQVTLSQDPETQNWWLISDGTNVGYFPASLFTNMKWANQVGWGGGTTTPVGTLSPPMGSGH FPDNSFNHACYFDRLAYTDESRKDYGPGTAVVKSFTDQPKCYGVNYYGNLQGTAGFTLKFGGPGGSCGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 2 | 387 | 386 | 3.4E-157 | – | |
| PANTHER | 2 | 387 | 386 | 3.4E-157 | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 389 | 367 | - | – | |
| Pfam | 47 | 130 | 84 | 5.8E-25 | ||
| Pfam | 166 | 383 | 218 | 1.2E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0093700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…