Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0094500 |
| Transcript ID | LotjaGi1g1v0094500.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT1G66250.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2; TrEMBL-Plants: tr|G7K1P2|G7K1P2_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi1g1v0094500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14251184..14253718) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTTGCATTTTCTTCTTCTGCTGCTTTTTGCAGTTTCTGTTGTTGCAGCTGATGAGGGTGAGTGTGGTGTGAACAG TATTTCTTTGCTATTTGCTGTTTGTGCTTTCTCTGCTGCCAAGTTTTCTCTAGAGATTATGTGTTTTCCACTTTTTAAAG TTATGCTTCCATTCTGAATCTCTCATTGCCATTTGTTTTCTCAACATGGGTTAGCATTATTCAGAAATTACATTTGAAAA AGTTACATTTTTTTGAACTGTTTGGTTCTTCTCAAGCCATTACTTACTTGTTCTGTTCTCTCCCTCAAGCAGAGGAGTTT TGTTGATTCCTTGTTGTTTTTTTGCTTTGTTGTGTGAAAACCCTTATAGACCCTTACATTGCTTCCATTTTCACACCTTT CCTAGCATTATTAGCACAACATTGATGTGTGTTAGAGTGTTGTTATCTGAGATTTAGTTAGTGTTATGTTCAGACCCAAG GTTTGTTGGGCATGTTATGACTGAGTTAATGAGTCATTGTGATATAGTGTTATCTGAGATTTAGTTATTGTTTGACCATT TTCTTTTTGGTTCACAAGACATTTCTAGGAGCATGCATTTTTCTTAACATGTTCACTCTTTCTGGGATTATAGTTTTGGC CAATAAGTAATACATGTACAATAAATTAAAATAGTAGCTAGGTTTTTATTGGCTGTTCTTCTTGAATGTGGTCCACCTAT AGGATTCAGAAATATTATATTCATATGGAGCAAGAATGCTTTTTTATCCTTCTTATCAGTCAAATATTGTCGTTCTTTAT AGTTCCAAACATGTGGATTTGTCATGTGTACTAGTGTGTATCAATTTGTAGGAAGATTGAAGAAGTTAGTTTTGAAAAAA AAAGCTTTTTTATTTTATTTTGAGGGAACTGTCTGTTGTTTAAGAATTTTGCTGGCAATCTTCAAAAGAAAGGAGGTAGA CTAGTCATATTAAATTTGGATTGGTTTGAACAAACATAATGTGCAAAAGAGTATGCCTGCAATGCTTCCCAATCCAACAT TGTGTTATTGGATTGGTTTATCAAGTGAGGACTTGAATCTTATTCTAACATTTGAACCTTGCAGAACCATTTATTGGAGT GAACATTGGAACAGATCTCTCAGATATGCCACACCCTACCCAAGTAGTGGCTCTACTTAAAGCTCAGAAGATTCGAAATG TTCGGTTGTATGATGCTGACCAAGCTATGCTCATTGCACTGGCAAAGACAGGCATTCAAGTTGTTGTAACTGTTCCTAAT GAAGAGCTCTTAGGAATTGGTCAATCGAATTCCACAGCTGCCAACTGGGTTTTCCGCAATGTGGTAGCACATTACCCTGC CACCAATATCACCGCCATTTGTGTCGGTTCTGAGGTTCTAACCACCCTGCCTAATGCAGCAAAAGTGCTTGTCAATGCGA TCAAGTACATTCATTCAGCCCTTGTCGCGTCGAATCTCGATCGCCAAGTTAAAGTCTCAACGCCTCTTTCCTCTTCAATC ATCCTTGATTCATTTCCACCTTCACAGGCTTTTTTTAACCGCTCAATGAATTCAGTTTTGGTCCCGATTCTCGATTTCCT CCAATCCTCTGGCTCTTATCTCATGCTCAACATTTACCCTTACTATGATTACATGCAATCAAATGGTGTGATTCCATTAG ATTATGCACTCTTCAAGCCTCTCCCTCCGAACAAAGAAGCCGTTGATTCTAACACCCTTCTCCATTACTCAAATGTCTTT GATGCCATGGTTGATGCAGCATACTTTGCCATGGCTTTTCTAAATTACACTAACATCCCTGTGGTGGTGACGGAGTCCGG CTGGCCCTCAAAAGGCGACTCCGACGAGCCTGATGCAACTGTGGACAATGCTAATACTTACAACAGCAATTTGATCCAGC ATGTGATTAACAAAACTGGAACCCCCAAACACCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAATGAGGAC ATGAAAACCGGGCCGCTGTCGGAGAAGAATTGGGGGCTGTTTGATGCTAATGGGGTACCTATTTACATTCTACACTTGAC AGGTTCAGGAGCTGTCCTAGCTAATGATACCAGCAATCAAACTTTCTGCATTGTGAAGGATGGTGCCGACCCGAAGATGG TGCAGGCTGCACTGGATTGGGCATGTGGCCCTGGCAAGGTGGAATGTTCTTCATTGCTGCAGGGTCAACCATGCTATGAA CCAGACAATGTGATTTCACATGCAAGTTATGCTTTTGACAGTTACTATCATAAGATGGGAAACACTCCTGATTCATGTGA CTTCAAGGGAGTGGCAACAATCACCACCTCTGATCCAAGTAATTACTATTCCCCAATATTGGGTTGGATTTGGGTTCCTG CAGTTCAGGGCAATCCTAAATTCACACAATCAAGGAATCCGAGACATTTGATCAAAAGTTGGACGACTCATTTTTCATTG AGAACAGACAGCAGAGATGAGCTCAAAATTTGAGATGGTCCAGATTTTGACCTAG
CDS sequence (LotjaGi1g1v0094500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTGCATTTTCTTCTTCTGCTGCTTTTTGCAGTTTCTGTTGTTGCAGCTGATGAGGAACCATTTATTGGAGTGAA CATTGGAACAGATCTCTCAGATATGCCACACCCTACCCAAGTAGTGGCTCTACTTAAAGCTCAGAAGATTCGAAATGTTC GGTTGTATGATGCTGACCAAGCTATGCTCATTGCACTGGCAAAGACAGGCATTCAAGTTGTTGTAACTGTTCCTAATGAA GAGCTCTTAGGAATTGGTCAATCGAATTCCACAGCTGCCAACTGGGTTTTCCGCAATGTGGTAGCACATTACCCTGCCAC CAATATCACCGCCATTTGTGTCGGTTCTGAGGTTCTAACCACCCTGCCTAATGCAGCAAAAGTGCTTGTCAATGCGATCA AGTACATTCATTCAGCCCTTGTCGCGTCGAATCTCGATCGCCAAGTTAAAGTCTCAACGCCTCTTTCCTCTTCAATCATC CTTGATTCATTTCCACCTTCACAGGCTTTTTTTAACCGCTCAATGAATTCAGTTTTGGTCCCGATTCTCGATTTCCTCCA ATCCTCTGGCTCTTATCTCATGCTCAACATTTACCCTTACTATGATTACATGCAATCAAATGGTGTGATTCCATTAGATT ATGCACTCTTCAAGCCTCTCCCTCCGAACAAAGAAGCCGTTGATTCTAACACCCTTCTCCATTACTCAAATGTCTTTGAT GCCATGGTTGATGCAGCATACTTTGCCATGGCTTTTCTAAATTACACTAACATCCCTGTGGTGGTGACGGAGTCCGGCTG GCCCTCAAAAGGCGACTCCGACGAGCCTGATGCAACTGTGGACAATGCTAATACTTACAACAGCAATTTGATCCAGCATG TGATTAACAAAACTGGAACCCCCAAACACCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAATGAGGACATG AAAACCGGGCCGCTGTCGGAGAAGAATTGGGGGCTGTTTGATGCTAATGGGGTACCTATTTACATTCTACACTTGACAGG TTCAGGAGCTGTCCTAGCTAATGATACCAGCAATCAAACTTTCTGCATTGTGAAGGATGGTGCCGACCCGAAGATGGTGC AGGCTGCACTGGATTGGGCATGTGGCCCTGGCAAGGTGGAATGTTCTTCATTGCTGCAGGGTCAACCATGCTATGAACCA GACAATGTGATTTCACATGCAAGTTATGCTTTTGACAGTTACTATCATAAGATGGGAAACACTCCTGATTCATGTGACTT CAAGGGAGTGGCAACAATCACCACCTCTGATCCAAGTAATTACTATTCCCCAATATTGGGTTGGATTTGGGTTCCTGCAG TTCAGGGCAATCCTAAATTCACACAATCAAGGAATCCGAGACATTTGATCAAAAGTTGGACGACTCATTTTTCATTGAGA ACAGACAGCAGAGATGAGCTCAAAATTTGA
Protein sequence (LotjaGi1g1v0094500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALHFLLLLLFAVSVVAADEEPFIGVNIGTDLSDMPHPTQVVALLKAQKIRNVRLYDADQAMLIALAKTGIQVVVTVPNE ELLGIGQSNSTAANWVFRNVVAHYPATNITAICVGSEVLTTLPNAAKVLVNAIKYIHSALVASNLDRQVKVSTPLSSSII LDSFPPSQAFFNRSMNSVLVPILDFLQSSGSYLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLLHYSNVFD AMVDAAYFAMAFLNYTNIPVVVTESGWPSKGDSDEPDATVDNANTYNSNLIQHVINKTGTPKHPGIAVSTYIYELYNEDM KTGPLSEKNWGLFDANGVPIYILHLTGSGAVLANDTSNQTFCIVKDGADPKMVQAALDWACGPGKVECSSLLQGQPCYEP DNVISHASYAFDSYYHKMGNTPDSCDFKGVATITTSDPSNYYSPILGWIWVPAVQGNPKFTQSRNPRHLIKSWTTHFSLR TDSRDELKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| PANTHER | 6 | 453 | 448 | 2.5E-269 | – | |
| PANTHER | 6 | 453 | 448 | 2.5E-269 | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 489 | 471 | - | – | |
| Gene3D | 24 | 345 | 322 | 1.2E-117 | – | |
| Pfam | 24 | 343 | 320 | 1.5E-80 | ||
| SUPERFAMILY | 24 | 343 | 320 | 4.27E-86 | ||
| ProSitePatterns | 258 | 271 | 14 | - | ||
| SMART | 360 | 444 | 85 | 2.6E-40 | ||
| Pfam | 361 | 432 | 72 | 9.8E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0094500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…