Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0097500 |
| Transcript ID | LotjaGi1g1v0097500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor, putative; TAIR: AT5G16560.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1; TrEMBL-Plants: tr|A0A0S3RL08|A0A0S3RL08_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0097500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14791345..14795837) extracted from Lotus japonicus Gifu genome v1.2.
ACCTTGTGCTTGTGACTTGTGCTGTGTGTATCTTCAATTCTCTTCTTCATTCTAGAGTGTCATTTTCTGAGTATATTATA AAACCCAAATCCACCTAGCTCTTTTCCTTCTTTCCCATACCTCTCAATTCTTTATTTTCTTTTCTGTTCCCTCTTGAAAC CTTCATTCCCTCCTACCTCACTGCTTAACAACTGTACACCCCATCTCTTATCTCTCTCTCTCTCATCAGTCATCATATTC TCAATGATCTCTCTTTAGCATGTCTGTTTTTTGTTTGGTAATCAATTGAGTCTGTGTACCTTTTCTTCTTCTTTTCAAGT TTCCAACATCTCAAGTCATAGGCTTGAGCAAGCTTTCCAGATTCTTCTCCTTGGAAAGACTTGTATGAGAAAAGAAAGCA AAAGACCCTTAACTTGCGTGAACATTGCACTTTAATTCCTTTGTCTCACCTCAGCATAAAAAACCTGAAGAAGATGACCT TGGAAGGGGTTTTCATTGAGCCCACATCAACTACTTCTACTTCCCCTGATCTTTCTCTTCACATAAGCCTCCCAAGCAGC AGCAACAACAACAACAACAATTATCATGAGTCCCAAAATATTTCATCCCCAAATTTCCCTTCAAGGAATGTTTCTCAAGC ACATACAGAACTTTCTCTAGGAAGAAATTTCACAGGTGGAGGAGCAACAACAACTGAAGCAGAAAAACCACACAATAATT ACCACCCTTTTCATCCAAGCCTAACCCATTTCCACCATCTTCACCATCACACCAATAATAACAATAGTTCTACTACTACC ACTCCCTTGAATGGCTTGAACTATGGCCTTTCATTGCTTGATGTATCACCAGAGGGGTTGAGGCCAATCAAGGGGATCCC AGTGTATCACAACCGTTCATTCCCTTACTTAGACAAAGATCATCATCATAACAAGATGTGCTTATACCATCCCATTCCCT CTTCTTCCTCTTCACCTTCGCCGTACCTCGCTGCAGCAGCATCAAGGGTGAATGGATTAATTTCTGGTGAAGCTTTCAGA TCTAACCATCAGTTGCACCATCATTCAGTCCTACATGGGGTTGGTCCTTCATCTCATGAGACCTCTTCTGGGTTTAATAT GAGATCCAGGTTTTTGCCTAAGCTTCCCACCAAAAGGAGCATGAGAGCGCCGAGAATGCGGTGGACAACCACCCTCCATG CTCGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGTAAACATTTTTTCCCCTTTCTTCCTCAATTTCTTCCA ACCCTTTTGTTTTTCTCTCAACATGATTTATGTTAATTTGTTCATTTGTTGTATATCTTCTTCTTTCCTTTAATTAATGA ATGAGATTGTCTATTAATACAATCTTTACATCAACTCTGCATGTTTGGAAACTGATTCAACCACTGTGAAACTAAAACTT TCGTGGATAAAAACAAAAGTTAAAGAGAATTACTTCTGTCGGTCATGATTTTAGTTTCACTATGTTTTTCAAACAAGTTT TCAAACTTGAATAAATGTTATTCGACATAATTGATTTTGGTTTGCAACTAACTAATTGTAGAAGAATTTGCAGAAATGCT GCAGTTGGTTTTTTTTCATTTTCTTTTTGTTAATTTTCTCATATTTTGAGGTCACTTAAGTTGATGTATTTTGATGATGA ATTTTAGGAGCTACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTT GCAGGTTTGTTTATAACACACACTCTCTCTTTGTCAGTGTCATATATGTTCATGTGGGGGGCGGTCTTGGTCTATCAAAT TCTGGCACGGTAACCGATGAAGAAAGCAGTGAATGAATGTGGGAGTGGATGAAATTAAAGTCTGCTCTGCAGTCAGCTAT GTAGGAAGCTTTTAAGACGTCTGAGAAGACCAGACAGAAACAACTCTTGGCTTTGAAAGAGAGAGAGAACAGACAAAACA AACATCATCATTTTCCAATAATACAACTCTATTACAACCTCATCAAATTAACATCATCCTCGTGATTAATGAGTCAAACC ATGACAATCCCAGAAGCCAACATAGAGGGAGAGAGTGAGAGAACGAAAAGAGATCTAAATCACCTGAAAGTCTCATTATA GTTGTAGATAGTTTACTGAACTTTTTAAGCATTAAGTCGAGAGTTTAATATCTAGATAATGTGCAGTGAAAGATTTGTTG GAAGAGATTTATTTATTTATTATAATTTTTAAGTTTCGAGATCAATATTGTTATTGCTGTCTCATGTCTTGAAAATATAA GAAAAAAAAAACTAAATAGGAATTGATTTTATATTCTTTGATTTCTTTTTATTGAAAATTTTGTTTGTCGCAATTCTCAC ACGCATACTAATTAATTAATGGTGCTCTTTCTAAAATGCCTTATTTTGTGTATGACTTATTTGCAGATGTATCGAACTGT TAAGACCACAGACAAGCCTATTGCTTCTTCAGGTAATTCATATTGTTTATATAGCATGTTTGTATAATGTTATAAGTATT ACATTAAATAGATATATGATCATGATGGTTTTTATATACGAAAAAATAATCATCACCTCTAAGCTAGCTCCACTTAACGT CGCTCTTAAATAGCTTGCTCTTCTTAGAGTACCCTACGTTTTTTTACTATGATTAAATTTCAATTTTACCGCAAACATTT TTTCCTTACTCGTCTCTTATATAGCTTAACTGCAAACTCTTTCAAAGGGCTTTTGAAAGACTCCACATTAGTCCAAATTA AATGATATAAAACTATAAAGATGAATGCATGCCTGATATATTTTTGAGAGCGAGCTTTTGAATGCAGGCCATTCAGATGG ATCTGGAGAAGATGAATTGTCTCCGATGGGTAGCAGCGTTGACCGAGGCGGTTTGAGTCAATTCTCAGACCACAGAGATC GAACGGATCGAGCAATGCATCAAGATATGGAACACTTATCCTCCACCACCACCACTCTATGGAGTAACTCTTCAAGGTAA AGTTATCACTTCCTCATTCTATATTATTAGAAAACATATATTATATATTTTATCTTTAAAAAGCTACTCACAGTTACTGC TGTTGGACATACTAAAATTGAACCTGATGATAATGTTACCGGCTCCAATTTCAGTATGCCCAGCAATTATAACATCCTCA TATTTAATTTTTGACTTTAGAATCGAGAGGGATTTCAAAACATGTACTAAATTGGTTTTATTATTTTGTGTCTGCAGCTT CTATAGACGTACATGTTTATGATTGTGCTTTTATTTGCTTTTGCCTTTCCATGGTATCTCTTGCATATCAACCCAAACCC ACGTCCAACGCATTCTTCTTTTTTATGAAGAATGAAAAGGTTACTTGTGTTGTGTCAGCTTTTGCTTTACTTGTGTTTAG TTGTTTTCTTTCTTTTGTATATATCTCTTGTCCCCTAGCGAAATTTTATATATATGACAAAGGAAAGGTGCAAGACATTA TACATAATCAACCGTTGCTATATGGTTAAGGATAACTTTTCCTTGGAATTTGATTTATATCTATGTTTCAACATTCTTTA TAATCCTTAATAAAGTCATCTATGAAAATCCTTCTGTGATTGATTCTCAAATCATAATCAATTATTAGGAAAAGCTTCAA AGAGTATAGCTTATGGCTAATTGCAATTTTCTTTTTACTCAGTTGTGGGGAGCCATGGTTACGTACTACTTCTAACAACA TAGACGGTCTTAGACCACCTATTCTCCATTCACAAACCATATCAAGAGGACATCAAATTCAGGTACCCATGTATATTATT TTGTTTTTCAACTCTCTTTATTTCTCATTTTCAAGTGGTTGTTTCATATATGACGTCAGAATAACAATAACAAATAACCC CACAGGAGTGTGATCCAACCCAACTCAAAAACGGTTTGCCTTGTTCTACTTTGGAGTACAAGAATCCAAGCTTGGAGTTC ACTTTAGGGAGACCAGATTGGAATGGCAAAGAACAAGCCTAGTTAATTTTTATTGGTTATATTATTGCCTTCTTGTTTTC TATATCATTTAGAATTAACCTATGATGATAACTTCATCATTTTCATGAAATGTAGAGGTGTATTTAAATATATATAAACT AGTGCTAGAAGGAGATGAAAAGCCCTAGTTCTAGCTGCTTAGATCCTTTTGGAGGTTTTTTGAGCTCATGAACAATTTTG CTCTTTTTATTTTTGTTCTATTGCAAATGTAGAAGCACAACCAAGAGGTGAGGAAAAGGATGGGAATGCATGTTTGAAAA CTAGGGGAACATATGAATAGAAAACTTTTCATTTTGATGAAATAGTTATCATCCCCCCACCCCCTTCTCGTTGTTTCATT TTTTCTTTCCCCTCTTACTTAATTGATTATGTAACCATTCATCCAATTTGGTTAAATAACAAATAGTATCCCATGATGAG AACATTAATTGTC
CDS sequence (LotjaGi1g1v0097500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCTTGGAAGGGGTTTTCATTGAGCCCACATCAACTACTTCTACTTCCCCTGATCTTTCTCTTCACATAAGCCTCCC AAGCAGCAGCAACAACAACAACAACAATTATCATGAGTCCCAAAATATTTCATCCCCAAATTTCCCTTCAAGGAATGTTT CTCAAGCACATACAGAACTTTCTCTAGGAAGAAATTTCACAGGTGGAGGAGCAACAACAACTGAAGCAGAAAAACCACAC AATAATTACCACCCTTTTCATCCAAGCCTAACCCATTTCCACCATCTTCACCATCACACCAATAATAACAATAGTTCTAC TACTACCACTCCCTTGAATGGCTTGAACTATGGCCTTTCATTGCTTGATGTATCACCAGAGGGGTTGAGGCCAATCAAGG GGATCCCAGTGTATCACAACCGTTCATTCCCTTACTTAGACAAAGATCATCATCATAACAAGATGTGCTTATACCATCCC ATTCCCTCTTCTTCCTCTTCACCTTCGCCGTACCTCGCTGCAGCAGCATCAAGGGTGAATGGATTAATTTCTGGTGAAGC TTTCAGATCTAACCATCAGTTGCACCATCATTCAGTCCTACATGGGGTTGGTCCTTCATCTCATGAGACCTCTTCTGGGT TTAATATGAGATCCAGGTTTTTGCCTAAGCTTCCCACCAAAAGGAGCATGAGAGCGCCGAGAATGCGGTGGACAACCACC CTCCATGCTCGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTTGAGCTCAT GGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACAGACAAGCCTA TTGCTTCTTCAGGCCATTCAGATGGATCTGGAGAAGATGAATTGTCTCCGATGGGTAGCAGCGTTGACCGAGGCGGTTTG AGTCAATTCTCAGACCACAGAGATCGAACGGATCGAGCAATGCATCAAGATATGGAACACTTATCCTCCACCACCACCAC TCTATGGAGTAACTCTTCAAGTTGTGGGGAGCCATGGTTACGTACTACTTCTAACAACATAGACGGTCTTAGACCACCTA TTCTCCATTCACAAACCATATCAAGAGGACATCAAATTCAGGAGTGTGATCCAACCCAACTCAAAAACGGTTTGCCTTGT TCTACTTTGGAGTACAAGAATCCAAGCTTGGAGTTCACTTTAGGGAGACCAGATTGGAATGGCAAAGAACAAGCCTAG
Protein sequence (LotjaGi1g1v0097500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLEGVFIEPTSTTSTSPDLSLHISLPSSSNNNNNNYHESQNISSPNFPSRNVSQAHTELSLGRNFTGGGATTTEAEKPH NNYHPFHPSLTHFHHLHHHTNNNNSSTTTTPLNGLNYGLSLLDVSPEGLRPIKGIPVYHNRSFPYLDKDHHHNKMCLYHP IPSSSSSPSPYLAAAASRVNGLISGEAFRSNHQLHHHSVLHGVGPSSHETSSGFNMRSRFLPKLPTKRSMRAPRMRWTTT LHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPIASSGHSDGSGEDELSPMGSSVDRGGL SQFSDHRDRTDRAMHQDMEHLSSTTTTLWSNSSSCGEPWLRTTSNNIDGLRPPILHSQTISRGHQIQECDPTQLKNGLPC STLEYKNPSLEFTLGRPDWNGKEQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 55 | 55 | - | – | |
| PANTHER | 1 | 423 | 423 | 2.2E-119 | – | |
| PANTHER | 1 | 423 | 423 | 2.2E-119 | – | |
| Gene3D | 229 | 290 | 62 | 1.8E-24 | – | |
| SUPERFAMILY | 230 | 286 | 57 | 2.33E-15 | ||
| TIGRFAM | 233 | 286 | 54 | 2.9E-23 | ||
| Pfam | 234 | 285 | 52 | 1.6E-5 | ||
| MobiDBLite | 289 | 325 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0097500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…