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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0098400 |
| Transcript ID | LotjaGi1g1v0098400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT2G01970.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9ZPS7|TMN3_ARATH Transmembrane 9 superfamily member 3; TrEMBL-Plants: tr|A0A0L9UX18|A0A0L9UX18_PHAAN Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0098400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14982800..14986838) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAAAAGTCAATGACATGTTTGGGTGGTGCCATTGTGATCCTATGTTGCTGCATAAGACATGTCACATCTGATGCATT AGATCATCGTTACAAAGAAGGAGATTCAGTCCCTTTTTATGCCAACAAGGTGGGACCCTTTCACAATCCCAGGTCAGATT TTCAATCTCTCTCACTCTCACTATCATTTCTGCTTCAAAACATTTCAATCCCAATGTTCCTGAAATGATATTAGAGGGGG GAAAAACATTTTTTTTGGGTTGTGTTGTGATGGGGTTATTACCATTCTAGAATGAGATTTCCTCTGGGATTTGGATGCAT TGGCTCTTTCATCCCAAAGTGTTGTTCTGAGTTTTATGTAATAAACATCCAATAACCGTGTCAATTTATGGTGTGGATTT AGAACATGTGCTAGAATGATGGCGCCAATCAAAACAATGTGTTGAATTCTGGTTTTCTTTGATCACTGAGAACTAGTCAT TTGAATGAACCAATTGAATGAATTCTTCAAGCTGTGACATCAGTTATGACTTATTAATTATTATAGTGAGACCTCCAGTT TCACTGTAAAATCTCAAAATCAGATTTATTAGTTTGCTTTGCTTCAATGTCAAATTGTAGACAGTGTTCAATGTAAGCTT TTAAAGAATTCAAGCCACCAGGATGGCAGAGTTTAGCTCAAATTGTTTTAATATGACTTACCTTGATAATCAAGTAATGC TGTAATGTAACACATCTCTTCCATTTGATCACACACCATTTCATTCTATTTCTTTTACTAAAGTTTGATTTACTATTTTT TATGCGAAAGAATATTGCATTTCTGTTTCGCTGAAAGGCTACTGAATTCTTGAATTTTGCATTAGAAAATAATCTACATC CTTATGTATAAGAATGGATATTAAAATAGTGTAACACTTATTAATTTCTAAAGCATTAAGTTATCATGACTTTCTTCCTT ATAATAGGCTGACTTTGATAATTCTTTGTGCTTTCCCTGATTCCTTTGAATGCCACAGTGAGACATACAGATACTATGAC CTTCCCTTTTGCTCACCAGGTTAGCCAACGAGGATCATTCTTTTTCTTTTTCCCTTCATTTCCTACTATATTGTCTTTGT TTCTCACTACTCCTTATAATTCCAAAGCTTGTTGGATGCAGCTAATGTGGAAGAAAAGAAAGAAGATCTTGGTGAAATTT TGAATGGGGATCGTTTAGTTGTTGCTCCTTTTAAATTGGATTTCCAAATTGATAAAGAACCTGAGAGCTTCTGCAGAAAG AGGCTAACAAGAAAAGAGGTTGCTCAATTCAGATTTGCAGTCTTGAAGGACTATTTTTACCAGATGTACTATGATGACTT GCCAATTTGGGGTTTCCTTGGAAGATTTGACAGTGATGACAAAGATGATCCAACTGTGGCTACTTCAGTATATCTTTTCA AGCATGTCCACTTTGAGATCCTGCACAATAAAGATCGAATCATCGATGTTTTCATTCGAAATGATCCGAATGAAGTTGTG GACTTGACAGAAAATAGAGAAGTGAATGTGGACTTCACATATTCTGCTAAATGGACTCAAACAGATATTCCATTTGAGAA GAGGCTTGAGAAATACTCACAGACGTCCTCATTGTCAGACCACTTGGAAATCCATTGGTTTTCTATCATTAACTCATGTG TGACTGTTATCCTCTTGACTGGATTCCTTGCCATAATTCTCATGCGTGTGCTCAAGAATGATTTTGTCAAGTAAGAGAAT CATTCTCATTCACTGATCTCAGCTGTGTGTATTTTCATTGATTTAGGGTTCTTAGGGTAATCAGCTTATGGAAATAAACG CTTATCACATAAGCATTTTTTCCTAAATATACTCAAAATAGATTATAGGTAGGTGTAAGTGCTTATTCATTTGTTAATCT GAGCAGCTTATGAAAATAAACTCCTTATACGTAGGTCATGAGCTATTTGCATATACTCTGCTAGACATTTGCATAAGTGT TTGTGAGAGTGGATGGAAGCTTATGCTATAAAATAAATTTAAATTAGCTCTTCCAACTGAGGCTTTGAATTTTTTAGCTT GTGGAACTTATTGCCTCAACTATTCCAAATATGACAGATTTGCTCCCGATGAGGAGGCACATGATGAACAGGATGAGAGT GGATGGAAGTATATTCATGGTGATGTGTTCAGGTACCCAAGATACAAGTCTTTGTTTGCAGCAGCACTTGGAACAGGCTC CCAGCTATTTACACTGTAAGTTAGTTAACCTCTCAATTACGTGTTCGGATTCTTTGCACTCAGGAAATCTTGCATTTGGT CAAGTTAGGGGGGTCCACAGTCGTCCGACCAAGATTGTATGGTTCAGATTTAAAGAAATTACTTTAAGTGTGTAGTAACT TCTTTAGTTCTGAGCCGACCAATCTTTATCGGACGACTGTAGACCCTAACTTCACCATCTAGGATTCTTGGACAGCAGGG AATTCGGGTACCTCAAGCACTTATCTTTCAAAGTTTTTTTTTTTTCTTGGCCTTGTATTGTTCAGCTCTTGTAACCATGT ATCTTTGCTCCTGTTTCAGTGCAATATTCATCTTTATGCTAGCTCTAGTTGGTGTTTTCTATCCATACAACAGGGGAGCT CTGTTTACTGCACTTGTTGTCATATATGCACTAACATCTGGCATTGCTGGCTACTCTGCATCTTCTTTCTATTACATGAT TGAAGGGAAAAACTGGGTACATCACCACACCTTTGACAGCATATATCATTGCGGCTCCACATACTTGTTTTGACTACTTA ACTCAGTGTTCACATTCTTGCTAAATTTCTTCATGATAGCAGCATATTGTCTAGTTTACTGGTTTTGAAATCCCATAACT CTCCACATGGATCAAACAGATTCTTGATGATAATCCTAAACCATGTTCTTTTTTTTTACTTTCTAGTCAATGTTTTGATT AGGTAAACTGATAATCAAGGAATCTGTTTGATAAAAGCATGTCTGGAACAGCTTCGCGTTCCTCATAATCAATTCTAACA CCCTGAAACTACTCACAAAAACTTCTCCCCTTAATTGATTTTGGCTTCAGAAATTAGAATCAATTGTAAAGAATTTCTAA ACACATACTTAGTTGCCTTTCCCTTACAGTTACCACAGTTGAAATTTGAAAGAACACTGCAGAAAGCACAAGCCTAAATG AAACACACTGATCAAGTTTTGGTTTCTTGCTTGCCAGGTGAAAATTTTGGTGCTAACTGGGAGCCTGTTCTCTGGACCTT TGTTCTTGACATTCTGCTTTCTCAATACTGTTGCACTTGCCTATAACTCCACTGCAGCACTACCATTTGGAACAATTGTC GTTATTTTCCTCATATGGACTCTTGTAACCTCACCTTTACTAGTATTGGGTGGGATTGCTGGTAAGAATAGCCGATCAGA GTTTCAGACTTCCTGTCACACCAACAAGTACCCCAGAGAGATCCCACAACTACCTTGGTACCGTAGAACTCTTGCTCAAA TGGCCATGGCAGGGTTTTTGCCATTCAGTGCCATTTACATTGAACTCTTCTACATATTTGCTAGTGTGTGGGGTCACCAG ATTTACACCATATACAGCATTTTGTTCATTGTTTTCATCATCCTCTTGATTGTCACTGCCTTCATCACTGTAGCATTGAC ATACTTTCAGCTTGCTGCTGAGGATCATGAATGGTGGTGGAGGTATATGTATAATGCAACATCAAGAGTTCATCACTATT TTGTCTTGTAATTCAAGTTCCCCAATTCTTTAACTTATTCATTTTTGGCATAATTTCAGGTCTTTCCTTTGTGGTGGATC AACCGGCTTGTTCATATATGGGTACTGCATATATTACTACCATGCAAGATCAGATATGTCTGGATTCATGCAAACCTCTT TCTTTTTTGGCTACATGGCATGCATTTGCTATGGTTTCTTTCTCATGCTTGGAACAGTCGGTTTCCGGGCTTCTTTTATC TTTGTTCGTCACATATATTGTTCTATCAAGTGTGAATAG
CDS sequence (LotjaGi1g1v0098400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTATGATGACTTGCCAATTTGGGGTTTCCTTGGAAGATTTGACAGTGATGACAAAGATGATCCAACTGTGGCTAC TTCAGTATATCTTTTCAAGCATGTCCACTTTGAGATCCTGCACAATAAAGATCGAATCATCGATGTTTTCATTCGAAATG ATCCGAATGAAGTTGTGGACTTGACAGAAAATAGAGAAGTGAATGTGGACTTCACATATTCTGCTAAATGGACTCAAACA GATATTCCATTTGAGAAGAGGCTTGAGAAATACTCACAGACGTCCTCATTGTCAGACCACTTGGAAATCCATTGGTTTTC TATCATTAACTCATGTGTGACTGTTATCCTCTTGACTGGATTCCTTGCCATAATTCTCATGCGTGTGCTCAAGAATGATT TTGTCAAATTTGCTCCCGATGAGGAGGCACATGATGAACAGGATGAGAGTGGATGGAAGTATATTCATGGTGATGTGTTC AGGTACCCAAGATACAAGTCTTTGTTTGCAGCAGCACTTGGAACAGGCTCCCAGCTATTTACACTTGCAATATTCATCTT TATGCTAGCTCTAGTTGGTGTTTTCTATCCATACAACAGGGGAGCTCTGTTTACTGCACTTGTTGTCATATATGCACTAA CATCTGGCATTGCTGGCTACTCTGCATCTTCTTTCTATTACATGATTGAAGGGAAAAACTGGGTGAAAATTTTGGTGCTA ACTGGGAGCCTGTTCTCTGGACCTTTGTTCTTGACATTCTGCTTTCTCAATACTGTTGCACTTGCCTATAACTCCACTGC AGCACTACCATTTGGAACAATTGTCGTTATTTTCCTCATATGGACTCTTGTAACCTCACCTTTACTAGTATTGGGTGGGA TTGCTGGTAAGAATAGCCGATCAGAGTTTCAGACTTCCTGTCACACCAACAAGTACCCCAGAGAGATCCCACAACTACCT TGGTACCGTAGAACTCTTGCTCAAATGGCCATGGCAGGGTTTTTGCCATTCAGTGCCATTTACATTGAACTCTTCTACAT ATTTGCTAGTGTGTGGGGTCACCAGATTTACACCATATACAGCATTTTGTTCATTGTTTTCATCATCCTCTTGATTGTCA CTGCCTTCATCACTGTAGCATTGACATACTTTCAGCTTGCTGCTGAGGATCATGAATGGTGGTGGAGGTCTTTCCTTTGT GGTGGATCAACCGGCTTGTTCATATATGGGTACTGCATATATTACTACCATGCAAGATCAGATATGTCTGGATTCATGCA AACCTCTTTCTTTTTTGGCTACATGGCATGCATTTGCTATGGTTTCTTTCTCATGCTTGGAACAGTCGGTTTCCGGGCTT CTTTTATCTTTGTTCGTCACATATATTGTTCTATCAAGTGTGAATAG
Protein sequence (LotjaGi1g1v0098400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYYDDLPIWGFLGRFDSDDKDDPTVATSVYLFKHVHFEILHNKDRIIDVFIRNDPNEVVDLTENREVNVDFTYSAKWTQT DIPFEKRLEKYSQTSSLSDHLEIHWFSIINSCVTVILLTGFLAIILMRVLKNDFVKFAPDEEAHDEQDESGWKYIHGDVF RYPRYKSLFAAALGTGSQLFTLAIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYSASSFYYMIEGKNWVKILVL TGSLFSGPLFLTFCFLNTVALAYNSTAALPFGTIVVIFLIWTLVTSPLLVLGGIAGKNSRSEFQTSCHTNKYPREIPQLP WYRRTLAQMAMAGFLPFSAIYIELFYIFASVWGHQIYTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLC GGSTGLFIYGYCIYYYHARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASFIFVRHIYCSIKCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 425 | 425 | 4.7E-138 | ||
| PANTHER | 1 | 468 | 468 | 0.0 | ||
| PANTHER | 1 | 468 | 468 | 0.0 | – | |
| Phobius | 1 | 102 | 102 | - | – | |
| Phobius | 103 | 126 | 24 | - | – | |
| TMHMM | 105 | 127 | 23 | - | – | |
| Phobius | 127 | 167 | 41 | - | – | |
| Phobius | 168 | 196 | 29 | - | – | |
| TMHMM | 170 | 192 | 23 | - | – | |
| Phobius | 197 | 201 | 5 | - | – | |
| Phobius | 202 | 222 | 21 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 223 | 233 | 11 | - | – | |
| Phobius | 234 | 263 | 30 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 264 | 268 | 5 | - | – | |
| Phobius | 269 | 291 | 23 | - | – | |
| TMHMM | 274 | 296 | 23 | - | – | |
| Phobius | 292 | 331 | 40 | - | – | |
| TMHMM | 330 | 352 | 23 | - | – | |
| Phobius | 332 | 353 | 22 | - | – | |
| Phobius | 354 | 358 | 5 | - | – | |
| Phobius | 359 | 381 | 23 | - | – | |
| TMHMM | 362 | 384 | 23 | - | – | |
| Phobius | 382 | 392 | 11 | - | – | |
| Phobius | 393 | 417 | 25 | - | – | |
| TMHMM | 397 | 419 | 23 | - | – | |
| Phobius | 418 | 428 | 11 | - | – | |
| TMHMM | 429 | 451 | 23 | - | – | |
| Phobius | 429 | 451 | 23 | - | – | |
| Phobius | 452 | 468 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0098400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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