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LotjaGi1g1v0099300.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0099300
Transcript ID	LotjaGi1g1v0099300.1
Related isoforms 1	LotjaGi1g1v0099300.2
Lotus japonicus genome version	Gifu v1.2
Description	Sister chromatid cohesion protein PDS5 like B-B; TAIR: AT4G31880.1 transcriptional regulator; Swiss-Prot: sp\|Q04264\|PDS5_YEAST Sister chromatid cohesion protein PDS5; TrEMBL-Plants: tr\|I3S8P0\|I3S8P0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0099300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:15141962..15144727) extracted from Lotus japonicus Gifu genome v1.2.

AAAACAAACAAACCATAAAGGACTGGTCACACTGTCATAAACTAGCTTTGTCAGTAAAACCTTAAACCTAATGTCGGAAT CCACTCTGCCTTCGCACACTGCATAGAGCTCTACATTTCCCCTGCCGTCGTCCAAGCAAGGTACTTGCCGTCGAGTCGAA CCTTCAAGGTGTTTGTTGGTTTGTATCAAAATTTCTGATTTTGCTGCTAATGCATGTATCAAAATTTCTGAGTTTGCTGT TGTTTGTGTTCTGTGATCATGTTTTTTAAAATGGCTTAGGAATCCTTGATTCTTTTGGGAAAATGAAACTTTGACTATGA TTGACTACCTATTGCTATTTGTATTGAGAGTATGATATTGATAGTGAAGGAGCGCTTTTGCATTTCTTTGTCATAACAAA AATGCTGGATTTTTAGTGTTTACAATGCAGTACATAGTGGTCAGTAAGACAGCATTTCCATTTTAATTCAGAAAATACTT GTTTGTTTGTATTGAAGGAGCCCTTATATTTTGTTCTTGCTGTGAAACTCTTTGCTTGTCAATGGAGTCTGAACTTAGAA AAGAAGAACTGTCCTCTTGTAGTATAGTATAGATATACTCATTCCTACACCCACTTAAATTATAATAGGTGAATAGTAAT TGGATTGCATATAGTTCTTATATTTGTCAATAAAATTTAGATTTGATAATTAATGTATTTACTAGTGGATGCTTTATTTA GATTTGTTAACCTATTAGTAGATACCAACTCTCCAATCTGCGGTGAGTTGAGCCGTGTTGAGCCAGCCTGAGTTTGGCGC ACTTTGACAGCTCTGCTCATATTAAAAAATAGATTGTATCACTTTTCTCCAGATTTGTGCTTGGTGGTTGAAGAGGAGAG TCAATAGCAGAACAAATGGTTGCAATAAAGCTCACGGACAAGGAGCTCCGAATGGAAAAGGAGCTTCTGGAAGCAGGAAG CAAGCTTGCAGATCCTCCATCATCTGTTGATGAGCTCTTGAATCTCTTAGACGTAAGCAATTTTTTATTAGCAAGCCTCA CCCGTACTTGTTCTTTCTGCATTTATTTTGTTTTCATCCCTGTTGCTTTGTATTTGTAGCGGGTCGAGTGTTGTGTGTCT AGTGTGGAACAGTCACATACTGAGCCTATGCTTATTGCACTTTCGCCATTGTTGAAAGCACTGACTGCTGATAAACTTAT GAGGCATTCAGATGAGGGTGTAAGAGTTTCTATTGCCTCTTGCATCAGTGAACTTATAAGAATAACGGCCCCTGATCCTC CTTATGAAGATGACCAAATGAAGGTGCGAGAACAACTGATTTCTATTACAAGTTATTATATTGTTCTGTCATTTACCAAT GCCATTACACGTTGCAGGAGGTGTTTCATTTGATTGTATCAGCTGTTGAAAATTTGCATGATATGTCAAGCCGATCATAT GCAAAGAGGATCAATATTCTCTATTTGCTTGCGAAAGTCAGGTCATGTATTTTAATGCTGGATCTCAATTGTGATTTGCT GATTTTGGAGATGTTTCAGCATTTCTTTAAGGAAATTAGGTGAGTGCCATATATTTTCTCTTACTCCCTCCGTCCCAATT TATAAGTCATTTTTACCTAATTCTCTAGGATTAAGAAAAGTAGTTACTAGCACTAAATTTGCAAAAAGTTTTATTAACTT TCCTTGATTGCCCATGAATTTCTCTCTCCAAATTGAAAACTTTTCAAAATCACACCATCTCTTTCATATTAAATATGAGG GTAACTTTGGGGAAAAAATATATTAAATGCTTCAGGGAATATCACCCAGAGACCGTATTTTCATCCATGGAGACTATCAT GAACCTTGTCATTGAGGAAAGTAATGATTCGAGTTGGGATCTAATTGTTCCAGTTTTAACCAGAGTTCAGGAACATGATG AGGTTTGCAAATTTCATTTTCATTAGCTGAGTTTGATTTTGCATGAGCTTAGTGTTGATTAATTTTATTAGGGATTCTGT CATTTTGTACCTTGTTTTCAAAATATTTTTATGATGTAATTATATCTGATTATCAAAACATAATTTTTCTTATAATTTTA ATTGCTTTTAAATATTTCTTAAAATGCTAGTTTTTTTTGTTTCGCAAATATAATAATAATTAGTGTAATCAAAATTATGA TTCAGGGAGTTTCTCCAACAGCTAGAAAATTGGGGGAGAGAGTCCTGAAGGCTTCTACTATCCTTAAACTTCAACTTTAT CAAGAAAAGAAAAGCTTGGAAAATTCTGGGGTTGATTATAACCAAGAAAGTGTGTAGCTGGCATTGAATAACATATTGAC GGGGATATTTGTAAGAAATTATTGATTGTCTTGTATATTATTACATTTATCTAGAAGGATGAGAGTAAATCAGCAACTAC AATTGCTGAAAGTCAGTACAGGTTCTGTGTTAGACTGCCATGAATGTGAAGCACTTGAGGAAAACAATGGATGTCGGCAT GATGACCGGTTGTTCTAGGACTTTTGGTCCTGAAACTTGTGGATCTTTACTTTTTTTATAGTTTCGAGAGCCCGAAACTT GGTGGTGTTCTGAGACTCTCCAAATCTTCAAGCAACCGGCTTGTCCCTGAAACTTGTTATTGTACTCAAAGATTGAAAGG GCACTTTTTCAGATCTTTCTTTTGTTAATGTAGTATTGTTTTTTTAGAAAATGAAAATATATAGTATTGTTATCTATTAT AGGTGAGTAGATTTGCCATAGTAAATGAAAATCACTTATATCTAAC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0099300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGCAATAAAGCTCACGGACAAGGAGCTCCGAATGGAAAAGGAGCTTCTGGAAGCAGGAAGCAAGCTTGCAGATCC TCCATCATCTGTTGATGAGCTCTTGAATCTCTTAGACCGGGTCGAGTGTTGTGTGTCTAGTGTGGAACAGTCACATACTG AGCCTATGCTTATTGCACTTTCGCCATTGTTGAAAGCACTGACTGCTGATAAACTTATGAGGCATTCAGATGAGGGTGTA AGAGTTTCTATTGCCTCTTGCATCAGTGAACTTATAAGAATAACGGCCCCTGATCCTCCTTATGAAGATGACCAAATGAA GGAGGTGTTTCATTTGATTGTATCAGCTGTTGAAAATTTGCATGATATGTCAAGCCGATCATATGCAAAGAGGATCAATA TTCTCTATTTGCTTGCGAAAGTCAGGTCATGTATTTTAATGCTGGATCTCAATTGTGATTTGCTGATTTTGGAGATGTTT CAGCATTTCTTTAAGGAAATTAGGGAATATCACCCAGAGACCGTATTTTCATCCATGGAGACTATCATGAACCTTGTCAT TGAGGAAAGTAATGATTCGAGTTGGGATCTAATTGTTCCAGTTTTAACCAGAGTTCAGGAACATGATGAGGGAGTTTCTC CAACAGCTAGAAAATTGGGGGAGAGAGTCCTGAAGGCTTCTACTATCCTTAAACTTCAACTTTATCAAGAAAAGAAAAGC TTGGAAAATTCTGGGGTTGATTATAACCAAGAAAGTGTGTAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0099300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVAIKLTDKELRMEKELLEAGSKLADPPSSVDELLNLLDRVECCVSSVEQSHTEPMLIALSPLLKALTADKLMRHSDEGV RVSIASCISELIRITAPDPPYEDDQMKEVFHLIVSAVENLHDMSSRSYAKRINILYLLAKVRSCILMLDLNCDLLILEMF QHFFKEIREYHPETVFSSMETIMNLVIEESNDSSWDLIVPVLTRVQEHDEGVSPTARKLGERVLKASTILKLQLYQEKKS LENSGVDYNQESV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12663:SF3 View details on PTHR12663:SF3 Search for proteins/transripts with this domain View external data on PTHR12663:SF3	9	247	239	2.6E-106	–
PANTHER	PTHR12663 View details on PTHR12663 Search for proteins/transripts with this domain View external data on PTHR12663	9	247	239	2.6E-106	IPR039776 Show description in modal box View details on IPR039776 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF48371 View details on SSF48371 Search for proteins/transripts with this domain View external data on SSF48371	52	207	156	1.86E-6	IPR016024 Show description in modal box View details on IPR016024 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0007064 View details of GO:0007064 AmiGO InterPro QuickGO	Biological process	Mitotic sister chromatid cohesion	The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission.	Subterm of View details of GO:0007062 View details of GO:1903047 Part of View details of GO:0000070

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0099300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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