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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0099300 |
| Transcript ID | LotjaGi1g1v0099300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sister chromatid cohesion protein PDS5 like B-B; TAIR: AT4G31880.1 transcriptional regulator; Swiss-Prot: sp|Q04264|PDS5_YEAST Sister chromatid cohesion protein PDS5; TrEMBL-Plants: tr|I3S8P0|I3S8P0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0099300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15141993..15144641) extracted from Lotus japonicus Gifu genome v1.2.
CTGTCATAAACTAGCTTTGTCAGTAAAACCTTAAACCTAATGTCGGAATCCACTCTGCCTTCGCACACTGCATAGAGCTC TACATTTCCCCTGCCGTCGTCCAAGCAAGGTACTTGCCGTCGAGTCGAACCTTCAAGGTGTTTGTTGGTTTGTATCAAAA TTTCTGATTTTGCTGCTAATGCATGTATCAAAATTTCTGAGTTTGCTGTTGTTTGTGTTCTGTGATCATGTTTTTTAAAA TGGCTTAGGAATCCTTGATTCTTTTGGGAAAATGAAACTTTGACTATGATTGACTACCTATTGCTATTTGTATTGAGAGT ATGATATTGATAGTGAAGGAGCGCTTTTGCATTTCTTTGTCATAACAAAAATGCTGGATTTTTAGTGTTTACAATGCAGT ACATAGTGGTCAGTAAGACAGCATTTCCATTTTAATTCAGAAAATACTTGTTTGTTTGTATTGAAGGAGCCCTTATATTT TGTTCTTGCTGTGAAACTCTTTGCTTGTCAATGGAGTCTGAACTTAGAAAAGAAGAACTGTCCTCTTGTAGTATAGTATA GATATACTCATTCCTACACCCACTTAAATTATAATAGGTGAATAGTAATTGGATTGCATATAGTTCTTATATTTGTCAAT AAAATTTAGATTTGATAATTAATGTATTTACTAGTGGATGCTTTATTTAGATTTGTTAACCTATTAGTAGATACCAACTC TCCAATCTGCGGTGAGTTGAGCCGTGTTGAGCCAGCCTGAGTTTGGCGCACTTTGACAGCTCTGCTCATATTAAAAAATA GATTGTATCACTTTTCTCCAGATTTGTGCTTGGTGGTTGAAGAGGAGAGTCAATAGCAGAACAAATGGTTGCAATAAAGC TCACGGACAAGGAGCTCCGAATGGAAAAGGAGCTTCTGGAAGCAGGAAGCAAGCTTGCAGATCCTCCATCATCTGTTGAT GAGCTCTTGAATCTCTTAGACGTAAGCAATTTTTTATTAGCAAGCCTCACCCGTACTTGTTCTTTCTGCATTTATTTTGT TTTCATCCCTGTTGCTTTGTATTTGTAGCGGGTCGAGTGTTGTGTGTCTAGTGTGGAACAGTCACATACTGAGCCTATGC TTATTGCACTTTCGCCATTGTTGAAAGCACTGACTGCTGATAAACTTATGAGGCATTCAGATGAGGGTGTAAGAGTTTCT ATTGCCTCTTGCATCAGTGAACTTATAAGAATAACGGCCCCTGATCCTCCTTATGAAGATGACCAAATGAAGGTGCGAGA ACAACTGATTTCTATTACAAGTTATTATATTGTTCTGTCATTTACCAATGCCATTACACGTTGCAGGAGGTGTTTCATTT GATTGTATCAGCTGTTGAAAATTTGCATGATATGTCAAGCCGATCATATGCAAAGAGGATCAATATTCTCTATTTGCTTG CGAAAGTCAGGTCATGTATTTTAATGCTGGATCTCAATTGTGATTTGCTGATTTTGGAGATGTTTCAGCATTTCTTTAAG GAAATTAGGTGAGTGCCATATATTTTCTCTTACTCCCTCCGTCCCAATTTATAAGTCATTTTTACCTAATTCTCTAGGAT TAAGAAAAGTAGTTACTAGCACTAAATTTGCAAAAAGTTTTATTAACTTTCCTTGATTGCCCATGAATTTCTCTCTCCAA ATTGAAAACTTTTCAAAATCACACCATCTCTTTCATATTAAATATGAGGGTAACTTTGGGGAAAAAATATATTAAATGCT TCAGGGAATATCACCCAGAGACCGTATTTTCATCCATGGAGACTATCATGAACCTTGTCATTGAGGAAAGTAATGATTCG AGTTGGGATCTAATTGTTCCAGTTTTAACCAGAGTTCAGGAACATGATGAGGTTTGCAAATTTCATTTTCATTAGCTGAG TTTGATTTTGCATGAGCTTAGTGTTGATTAATTTTATTAGGGATTCTGTCATTTTGTACCTTGTTTTCAAAATATTTTTA TGATGTAATTATATCTGATTATCAAAACATAATTTTTCTTATAATTTTAATTGCTTTTAAATATTTCTTAAAATGCTAGT TTTTTTTGTTTCGCAAATATAATAATAATTAGTGTAATCAAAATTATGATTCAGGGAGTTTCTCCAACAGCTAGAAAATT GGGGGAGAGAGTCCTGAAGGCTTCTACTATCCTTAAACTTCAACTTTATCAAGAAAAGAAAAGCTTGGAAAATTCTGGGG TTGATTATAACCAAGAAAGTGTGTAGCTGGCATTGAATAACATATTGACGGGGATATTTGTAAGAAATTATTGATTGTCT TGTATATTATTACATTTATCTAGAAGGATGAGAGTAAATCAGCAACTACAATTGCTGAAAGTCAGTACAGGTTCTGTGTT AGACTGCCATGAATGTGAAGCACTTGAGGAAAACAATGGATGTCGGCATGATGACCGGTTGTTCTAGGACTTTTGGTCCT GAAACTTGTGGATCTTTACTTTTTTTATAGTTTCGAGAGCCCGAAACTTGGTGGTGTTCTGAGACTCTCCAAATCTTCAA GCAACCGGCTTGTCCCTGAAACTTGTTATTGTACTCAAAGATTGAAAGGGCACTTTTTCAGATCTTTCTTTTGTTAATGT AGTATTGTT
CDS sequence (LotjaGi1g1v0099300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCAATAAAGCTCACGGACAAGGAGCTCCGAATGGAAAAGGAGCTTCTGGAAGCAGGAAGCAAGCTTGCAGATCC TCCATCATCTGTTGATGAGCTCTTGAATCTCTTAGACCGGGTCGAGTGTTGTGTGTCTAGTGTGGAACAGTCACATACTG AGCCTATGCTTATTGCACTTTCGCCATTGTTGAAAGCACTGACTGCTGATAAACTTATGAGGCATTCAGATGAGGGTGTA AGAGTTTCTATTGCCTCTTGCATCAGTGAACTTATAAGAATAACGGCCCCTGATCCTCCTTATGAAGATGACCAAATGAA GGAGGTGTTTCATTTGATTGTATCAGCTGTTGAAAATTTGCATGATATGTCAAGCCGATCATATGCAAAGAGGATCAATA TTCTCTATTTGCTTGCGAAAGTCAGGTCATGTATTTTAATGCTGGATCTCAATTGTGATTTGCTGATTTTGGAGATGTTT CAGCATTTCTTTAAGGAAATTAGGGAATATCACCCAGAGACCGTATTTTCATCCATGGAGACTATCATGAACCTTGTCAT TGAGGAAAGTAATGATTCGAGTTGGGATCTAATTGTTCCAGTTTTAACCAGAGTTCAGGAACATGATGAGGGAGTTTCTC CAACAGCTAGAAAATTGGGGGAGAGAGTCCTGAAGGCTTCTACTATCCTTAAACTTCAACTTTATCAAGAAAAGAAAAGC TTGGAAAATTCTGGGGTTGATTATAACCAAGAAAGTGTGTAG
Protein sequence (LotjaGi1g1v0099300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAIKLTDKELRMEKELLEAGSKLADPPSSVDELLNLLDRVECCVSSVEQSHTEPMLIALSPLLKALTADKLMRHSDEGV RVSIASCISELIRITAPDPPYEDDQMKEVFHLIVSAVENLHDMSSRSYAKRINILYLLAKVRSCILMLDLNCDLLILEMF QHFFKEIREYHPETVFSSMETIMNLVIEESNDSSWDLIVPVLTRVQEHDEGVSPTARKLGERVLKASTILKLQLYQEKKS LENSGVDYNQESV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 247 | 239 | 2.6E-106 | – | |
| PANTHER | 9 | 247 | 239 | 2.6E-106 | ||
| SUPERFAMILY | 52 | 207 | 156 | 1.86E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Mitotic sister chromatid cohesion | The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission. |
Expression pattern of LotjaGi1g1v0099300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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