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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0100100 |
| Transcript ID | LotjaGi1g1v0100100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT1G65910.1 NAC domain containing protein 28; Swiss-Prot: sp|A4VCM0|NAC45_ARATH NAC domain-containing protein 45; TrEMBL-Plants: tr|A0A151S0M8|A0A151S0M8_CAJCA NAC domain-containing protein 74; Found in the gene: LotjaGi1g1v0100100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15239134..15244617) extracted from Lotus japonicus Gifu genome v1.2.
ATTACTTTTTCTTTCCAATTGCATTCTTCTCTCTCTTGTTCTCTTTTTGTCTTCTTTATCAAAACCCCAAGCAAACCCCA CATTCCACCCCTCTCCTCTTGTCTTGCTCTCTTCATCACCTCCCTGTGGTTCATTTTCTCTCCTTTTGGATCTTCTTCTT CCCTCAGGTCTCTCTCTCACTCGATCTCTATATAATTATATACATGCATAGTAATAGTATGTATGTATGAATGAAAAAAG ATGTTTATGTCTATTTTAATTAAGTTACTAATTAATATGGTTGTTTTGAGACGATTTTAACTTATATATTCATGCATGGC AGGGTTTGATTTTGTATAATTTGGTGATTAATTATTACATATTGAGACTTAATTTGTGTATTGTGTGACAGGTAGTTGCA GCTGATTGATATAATATCATCTATATATTAAGAGGAAGAAGGAGATCCAATTATCCAAAGTAATAAAATAAATATGGCAC CTGTTTCATTGCCTCCTGGTTTCAGGTTCCACCCTACTGATGAAGAACTTGTTGCTTACTACCTAAAGAGGAAGATTAAT GGCCGTAGGATTGAGCTGGAGATCATACCTGAAGTTGATCTCTATAAGTGTGAGCCATGGGACTTGCCAGGTATATATGT AAATAGAATTAAGCTCATCAACATTTTTCTCATTTTCTCATGCATGGATAAGTTGCTTTTAAAAATTGATATCATGGAGA TATAACTAAAAACCTCGACTTTATTATTTTTAATTTGTGTTTACTAATTGGTAAATCATCACTTCATTATGATTTGCATC TTTAAAAGGTGGCAAGACACCCGATTCTTTAGCTATATATAGATTGCGATCCTTTATTCATTGATATGGTGAAACACATA CTTGCTTTCTTGGTCAAGTATATTTTTCTGCTTTAACATAAAATATTTGATTAAGGCTAATTAATCTTTATATCGTGGAA AGGATTGTACTTAAGATTTCTAGAGAGGGTTAATAATGGTCCATTCACCAGCTTTAGGGTTCCTGTTGTGACCGTCGACC AGATTACAAATGAGACAATGGTAGATTCCCTAAGTCAAAAAAGGGTAAACTTATAAAGAAAGGGATTACACTGTGGCTAC AAGATATATAATTCACTTATACACGGTTCCATGCATGCACATGCATAGATATGCATTTCTTACAATATATTCTCCTATTT GCAATTACTTTTGCCCGGTTCATTTGCTTTATCACCTAACGAATTTGACATGAAAACATGGTGATTAACTATAATGAAAC TATTCAATGAAATATGGGGAAAAACACAATAGAATAAATAACTAGTGGTGCCACTTTTGCAGACATATATTTGTGAGATC TGAGTTCTTTGCATTAGGAAAATTCTAAATTCATGCATATAATATAATTAAGTAACATTGTTTTATCAAAGATCGGATAA TCATGTGTTTCATCAAGATCAGAATTGAGCCGCCAAAAATTCGTTAACGGTATGAATTTAGAAGTTCTCTCTTGACTTCA AGAAATTCAAATCCTTTAACTTGAGATTCTTAATCATTGTAAGAACTATATATGAATTCTAGCATGCACCATGGAGTAAT TATGCATTAAGTTAAAGAAATAGTTGTGGATTAGCAAATAAATTAGAGGCGAAAAAACAATTATATCTCTAATTTCCTAA CTAATCAATAGTGATTTCCTATCATGTATTCATGTATATCAACAGTGCAGTACTACACTATGTGCATATAACTAATTTGA AGGCTCTTTTGGTCATGATGATGAGTTATTATTACAGGGAAGTCGTTGTTGCCAGGAAAAGATATGGAGTGGTATTTCTT TAGCCCTCGTGATAGAAAGTACCCAAATGGATCAAGAACTAACCGTGCAACCAAATCTGGGTACTGGAAGGCTACAGGGA AGGATCGAAAAGTAAATTCACAGGCTCGAGCCGTGGGAATGAAAAAAACCCTAGTTTACTACAGAGGAAGAGCACCTCAT GGCTCTCGTACAAATTGGGTTATGCATGAATATCGCCTTGAAGAGAGGGAATGTGAAACCGCTTCAGGCTTGCAGGTTCA CAAATAGCTCATCTTCTTCATTTTTTTCCTCTTCACTTCAGTCCTTACTTTTGTTCCATTCATTATCCTTCATATATAAT GGAGTTAATTATATATCAACAAAGCCTAACACACAATTGGTAAATACCGAACTGTTGGAGGGAAAATTTTGCCGATAAAA AAAGACTCTTTTAAGCATACATCTCTAGCTATCGATAGGGAAAACCCGCGCAAACACACAAATTAAATTAACTGTCAACA TTTTCCCTTTATAAAATATCTCTACATTAAAGCACTTCAATATTGGACCATATTAAAAATTAATTCATCCATAAACCATG TTTTTATTTGTTGTAAAATGCAACATTTAGTATGCTATTACTTATTGTAAATATGCTTCTTCTGTCTTAAAATAAATTTG CAAGGTTTCCTAGATTTTTTCTTATCACATGATAGAGGGATTTTACACTATTAATTATTTAGAAAAATGATTAAGGGCTA TCGCGCATAGTGCAAACCGACTTTAAAAACACTTAAAATTAAATGATAAATGAAGAGAAAAGAGAAATAATAATTATATA TTGAAAAGAGAAAAAAAAAGTGTTTGTGAGGTGTCTAGTAAATATTATTCTTCTAATAATCCCAATGCATTCTTTTCTTG CCGATATTGCTACCAAGATTTATAGCCAGTGCTTTTGACTTTCAGATTCTTCATGTTGACTTTCTTTCTATTTGGGAAAA TATACTTTCAGGATGCATATGCTCTTTGCCGTGTGATCAAGAAGAGTGAAGTGATTGCACCAAAAGTTGGAGCTTACTGT GCTAGCATAACCAGCCAAGCTAACCAGATTACAAGCGATCAGTCATCAAGCATTGAGCTATATTCTGAAGGAAGGGGTGA AGATTTAGATAGCTCAAATTATTTGATGCCAATTGATACTTTCTCACACCACAATATGGGAAATGAGTCTTCTCTCAATA TCAATAGTGGGACAAGTCATCATGGGAATTGGCCACCCTTCTCATCAGAAGACTCATTATTTAGTCTTCCAACTTCTTCA TTTCCTAATTATGGAGCCATTACATACCCTCCATCCAAGGTAAGCAAAAACTTATCAGAACATATACTTGAATATCAACA ACAATAGTGATTAGGGGCATCTGCAAAGTGCGGACATCCAACAAACACCCCAATCATATTTGGGAAACTAGTTTCCAAAT GAAATTTGCTATATAATAACTAGTTTTCAGAAACTAGTTTCCGGAAGTTACGTGTAAAATTACATTCCGGGAACGAGTTT CTGGAATGTAATATTTTGGGATGTCTGGTGTGTGCACTGTGCGGGTATACACAAATGTTATTCTATAAACAAAGAACTGA AATTTAAATGTTTAACATTTGTTTAACATGAGATTTGATTTGCAGGTGGATATAGCTCTAGAGTGTGCAAGGATGCAACA TAGGTTTACTCTGCCACCTTTGGAGGTGGAAAACTTCCCTCAAGTTGGAATCTCTGAGATGCAGATGACACAAACATATG GTGCCATGCAAAGAGCTGAAACTGATATCTTGCAGGAAATTCTTTCAGTTGCTCATGCTTCTCAGGATTTGATGAATCAC CAGCACTCCAGCTACTCACAAGCATGGGGTGGCAATGAAAATTATGCTTCTCATGAAGGTGATTTTACTTTCATGGCTGG AACTAACTACAATCACATAAATGACATGAGCTCCATGAGCTATTCTGACAAAACATGGGAAGATTCAAACACAAGATCAA TAGAGATTGGTGATGTGGGTGAGGAGTTTAAGGCAGGGAGGATGGTAGAGAATTTAAGATGGGTTGGAATGTCAAGAGAA GATTTAGAAAAGGTATACTAATACTTACTTTTTCTGGTTTCATTTGTATATAAACATTAGCTCATTTAAGATTTTATTCC AATGTTAAAACTGCATTGGTTGAATGAAGGCCAAGACCCAAAAATAGATTTGATGTATTAACAGAAAATTAAAAAATTTC ACTTAATAGATTGAGAATACAGTAATATTGCTAATGGCTCCTAATATATATGTTAATACAGTAATAATGAATAAGTCTTT ATGATTGATAATCTGCTAAATTGGATAGATGGAAGAACAAAAGATTGTTCCAATTGAGGATATTTCAAGCTTCCAAACAA TCAGGGAAGAAAATGAGGTGCAAGGTACTAAAAAGTCACATCATACATGACTGCCTTTTCTGTTCTTTTCATTTTTTGCC AAAATGGTCATGTTCATGTTATCTTTTAGCTCTTCTTTTCAGTACCTTAACAAAATTAACAATTGTTTTTATTTACATCA GAACCTGAGAAAAACAATAGCAGCAAAGAACACAATGACACTGACATCAATGATTTCTCATTAGGCTTCATCAATGATGG TGACCCCAGTGAGAATTTCATAGAAGATGGTAATATGGATGATGATTACTCAAGTTCTCCAAGCTTTGAGGTTGTTGAGG AAACAAAGGTCAGTCATGGAATGTTTGTTTCAACTGGTCAAGTAGCCATGACACTCTTTCACCAAATAGCTCCTTCGCAA ACCCTCAAAGTACACCTCAATCCAGCAGTTATGGAAAAAAATAAACATTCTGTAGAAAATGCAGAGGCACAAATGATGCT AATGGAGAACAAAGGGTCCTTGTTTTGGAAGTTCAAGAGCTATGTTATGGGGAAGCTAACGAAGTCATCAAAGACAATAG CAAGTGTGGTTGTATTTGTCTTTGCACTTCTGTTGATGCATTGTGTTTATTTGAAGCAAGAAGTGGAAATTTGGAAACCA GAACCTGAGGATATGAAAGATAAATCCTGTGTTAGTGTTACCACCATGAAGAGAATGAAGCAATCATCTGAGATAGTCAA ATGGAATGAATCAAAAGAGGTTTGGTTTGTTGGCATCAAGAGTGAGAAAGGATTAAGTGCAGTCTTGAAGAAAATGGGCA TTTTCTTCACCATATCCTTAGCTCTTTGTACCATGTGGGCTAACCACATCATAGTTAACCCTTGATCTCCTAGTTCATTT ATTTTTGTCTCTAACTTAAGGAGTTTTAGTTTGAGAAGTCTGAAACTTTGCTTCTCTGAGTTTAGTAGGACACTTATCTA TCCAGATACTCATTATATCTAGTTTGACAGTTATTTCATTAAGCCATAATTGTACTCAATCATATGAATAGAAACGTTTA TCTTTGATTCACCTGTGAGGCTGTGAACTAAACCTGAAGAATACAAGGTAGGAAGCTTCCATGAAGGTTCAAATCAGAAG ACTACTTTCAGAATGATCATTAGAAAGCTTGACAACCAATCTAGATGGGCAATTGCACAAACTTCATGTAAAGAATGCTT TTTGCCATGGTGATCTCAAAGAAGAAATTTACATGGAATCCATC
CDS sequence (LotjaGi1g1v0100100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCTGTTTCATTGCCTCCTGGTTTCAGGTTCCACCCTACTGATGAAGAACTTGTTGCTTACTACCTAAAGAGGAA GATTAATGGCCGTAGGATTGAGCTGGAGATCATACCTGAAGTTGATCTCTATAAGTGTGAGCCATGGGACTTGCCAGGGA AGTCGTTGTTGCCAGGAAAAGATATGGAGTGGTATTTCTTTAGCCCTCGTGATAGAAAGTACCCAAATGGATCAAGAACT AACCGTGCAACCAAATCTGGGTACTGGAAGGCTACAGGGAAGGATCGAAAAGTAAATTCACAGGCTCGAGCCGTGGGAAT GAAAAAAACCCTAGTTTACTACAGAGGAAGAGCACCTCATGGCTCTCGTACAAATTGGGTTATGCATGAATATCGCCTTG AAGAGAGGGAATGTGAAACCGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGATCAAGAAGAGTGAAGTGATT GCACCAAAAGTTGGAGCTTACTGTGCTAGCATAACCAGCCAAGCTAACCAGATTACAAGCGATCAGTCATCAAGCATTGA GCTATATTCTGAAGGAAGGGGTGAAGATTTAGATAGCTCAAATTATTTGATGCCAATTGATACTTTCTCACACCACAATA TGGGAAATGAGTCTTCTCTCAATATCAATAGTGGGACAAGTCATCATGGGAATTGGCCACCCTTCTCATCAGAAGACTCA TTATTTAGTCTTCCAACTTCTTCATTTCCTAATTATGGAGCCATTACATACCCTCCATCCAAGGTGGATATAGCTCTAGA GTGTGCAAGGATGCAACATAGGTTTACTCTGCCACCTTTGGAGGTGGAAAACTTCCCTCAAGTTGGAATCTCTGAGATGC AGATGACACAAACATATGGTGCCATGCAAAGAGCTGAAACTGATATCTTGCAGGAAATTCTTTCAGTTGCTCATGCTTCT CAGGATTTGATGAATCACCAGCACTCCAGCTACTCACAAGCATGGGGTGGCAATGAAAATTATGCTTCTCATGAAGGTGA TTTTACTTTCATGGCTGGAACTAACTACAATCACATAAATGACATGAGCTCCATGAGCTATTCTGACAAAACATGGGAAG ATTCAAACACAAGATCAATAGAGATTGGTGATGTGGGTGAGGAGTTTAAGGCAGGGAGGATGGTAGAGAATTTAAGATGG GTTGGAATGTCAAGAGAAGATTTAGAAAAGATGGAAGAACAAAAGATTGTTCCAATTGAGGATATTTCAAGCTTCCAAAC AATCAGGGAAGAAAATGAGGTGCAAGAACCTGAGAAAAACAATAGCAGCAAAGAACACAATGACACTGACATCAATGATT TCTCATTAGGCTTCATCAATGATGGTGACCCCAGTGAGAATTTCATAGAAGATGGTAATATGGATGATGATTACTCAAGT TCTCCAAGCTTTGAGGTTGTTGAGGAAACAAAGGTCAGTCATGGAATGTTTGTTTCAACTGGTCAAGTAGCCATGACACT CTTTCACCAAATAGCTCCTTCGCAAACCCTCAAAGTACACCTCAATCCAGCAGTTATGGAAAAAAATAAACATTCTGTAG AAAATGCAGAGGCACAAATGATGCTAATGGAGAACAAAGGGTCCTTGTTTTGGAAGTTCAAGAGCTATGTTATGGGGAAG CTAACGAAGTCATCAAAGACAATAGCAAGTGTGGTTGTATTTGTCTTTGCACTTCTGTTGATGCATTGTGTTTATTTGAA GCAAGAAGTGGAAATTTGGAAACCAGAACCTGAGGATATGAAAGATAAATCCTGTGTTAGTGTTACCACCATGAAGAGAA TGAAGCAATCATCTGAGATAGTCAAATGGAATGAATCAAAAGAGGTTTGGTTTGTTGGCATCAAGAGTGAGAAAGGATTA AGTGCAGTCTTGAAGAAAATGGGCATTTTCTTCACCATATCCTTAGCTCTTTGTACCATGTGGGCTAACCACATCATAGT TAACCCTTGA
Protein sequence (LotjaGi1g1v0100100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPVSLPPGFRFHPTDEELVAYYLKRKINGRRIELEIIPEVDLYKCEPWDLPGKSLLPGKDMEWYFFSPRDRKYPNGSRT NRATKSGYWKATGKDRKVNSQARAVGMKKTLVYYRGRAPHGSRTNWVMHEYRLEERECETASGLQDAYALCRVIKKSEVI APKVGAYCASITSQANQITSDQSSSIELYSEGRGEDLDSSNYLMPIDTFSHHNMGNESSLNINSGTSHHGNWPPFSSEDS LFSLPTSSFPNYGAITYPPSKVDIALECARMQHRFTLPPLEVENFPQVGISEMQMTQTYGAMQRAETDILQEILSVAHAS QDLMNHQHSSYSQAWGGNENYASHEGDFTFMAGTNYNHINDMSSMSYSDKTWEDSNTRSIEIGDVGEEFKAGRMVENLRW VGMSREDLEKMEEQKIVPIEDISSFQTIREENEVQEPEKNNSSKEHNDTDINDFSLGFINDGDPSENFIEDGNMDDDYSS SPSFEVVEETKVSHGMFVSTGQVAMTLFHQIAPSQTLKVHLNPAVMEKNKHSVENAEAQMMLMENKGSLFWKFKSYVMGK LTKSSKTIASVVVFVFALLLMHCVYLKQEVEIWKPEPEDMKDKSCVSVTTMKRMKQSSEIVKWNESKEVWFVGIKSEKGL SAVLKKMGIFFTISLALCTMWANHIIVNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 567 | 567 | - | – | |
| PANTHER | 3 | 445 | 443 | 4.4E-136 | – | |
| PANTHER | 3 | 445 | 443 | 4.4E-136 | – | |
| SUPERFAMILY | 4 | 156 | 153 | 9.68E-65 | ||
| ProSiteProfiles | 6 | 156 | 151 | 61.799 | ||
| Pfam | 7 | 133 | 127 | 3.5E-41 | ||
| Gene3D | 15 | 160 | 146 | 1.6E-61 | ||
| MobiDBLite | 432 | 456 | 25 | - | – | |
| MobiDBLite | 432 | 451 | 20 | - | – | |
| Coils | 526 | 546 | 21 | - | – | |
| TMHMM | 567 | 586 | 20 | - | – | |
| Phobius | 568 | 586 | 19 | - | – | |
| Phobius | 587 | 647 | 61 | - | – | |
| Phobius | 648 | 667 | 20 | - | – | |
| TMHMM | 648 | 667 | 20 | - | – | |
| Phobius | 668 | 669 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0100100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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