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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0100500 |
| Transcript ID | LotjaGi1g1v0100500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SET DOMAIN GROUP 40; TAIR: AT5G17240.2 SET domain group 40; Swiss-Prot: sp|Q6NQJ8|SDG40_ARATH Protein SET DOMAIN GROUP 40; TrEMBL-Plants: tr|V7B812|V7B812_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0100500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15267350..15271066) extracted from Lotus japonicus Gifu genome v1.2.
CATGAAAATAACAGCTTACACTTTGTTCTGAAAAAACTAGGTTAGGGATTCTTGTAGGAAGAAGATGGAGCAGCAACAAG GAAGCCTTGAAAGCTTCTTATCATGGGCAGCACAGCTTGGAATATCAGACTCCACAAACACCGACCAACCTCAACACTCT CTCTCTTGTTTGGGCCATTCTTTATGTGTCTCTCTCTTTCCTCACTCTGGCGGGTACTCACCAAAATTTTCCTCTATTTT CATCATAGCTCATCGTATAAACTTTGCAATGAATTTATTTTCTTTATTATATAGTATCAATTTTATCACACAGTGACTGA ATAAATTTCTTCTTGTTGATGAACAATTAACTGAATATTGTTAATGATAATAATCTAAATGTTGATACTTTTGAATATTT TGTATTTACTAAGTCTGCCCTTTTTGCTGTATTATTTGGAGAATGTTGCAGTAGAGGTTTGGGTGCTGTGAGAGACCTTA GGAGGGGTGAAATTATATTGAGAGTTCCAAAATCTGCTTTGATGACTACAGAGAGTGTTATGGAAGATAATAAGCTCTGT CTTGCTGTCAATAAGCACTCTTCTCTCTCCTCAACTCAGGTTTCCTTCTTAACTTAGTGTGGTAATTTTGTTGCTGTTTA CAATTGAATCTGTGAAAATGTACCAAGAACCTGTTTAGATAAACTTCTTTAGTTACAAGCACTTTTAGGAAAAGAGAAGT TAAAATGATATTGAATAATCATGATCTTTCTAAAGTACAGCTCTTGCATTAGCAAAAACCATCCTGTTGCAAAGGTTAGA AAATGTTTTGGACTTATCGTAAGTTAAGGAACAAAATACTCATCTTTGTTGAAAAGCCCTCATAAGTTATAAGCTAATTC AAGCTGGGTCCAAAACATTAGGTTTTATTACCTTTCATTGGTTGTTGAACCAGACCAAGTATTTTATCTTAGAATTACTA TAGTCTATAGGTATGTTTGAACTGAGCTCTGAACACACCTATTAATGGATATGGTTTCATCATGTTGTTGTATTATTATT GTTGCTTATAATTTAGTCTTTTATGCTTTTGAACCTCTTATGCTTACTTCTAAGTTTGTGTATAATGCAGATATTGAGTG TTTGTTTGTTGTATGAAATGGGTAAAGGGAAGACTTCAAGATGGCATCCTTACCTCATGCATTTGCCGCAAAGCTATGAC GTGCTAGCCATGTTTGGTGAATTTGAGAAGCAGGCTCTTCAAGTTCAGTTTCTGTTAGAAATTTTAATTTATCTCATTAG GTTAGATTGTAGCATCTCAACTAATGGTATTTATCAGCACTCATTCCTACCTTATGTTAGAAATAATCTTTATGTTGTGA CTGTTAGGTTGATGAGGCTATGTGGGTCACAGAAAAAGCTGTACTAAAAGCCAAATCAGAGTGGAAAGAAGCTCATGCTT TGATGGATGATCTCATGTTTAAGCCCCGGCTTTTAACATTTAAGGCTTGGGTTTGGGCTGCTGCAACGGTTCGAAACCTG GCCTTTTATACATATTATACAGCATATTTATATTAGTTTCGAGTAAATCACAAATCAACTTTTTCTCTATCATTTAATCA CATTTAAATTTTTTAAATTCTAGATTTCTTCCAGGACATTGCATATACCTTGGGATGAAGCTGGTTGTTTATGCCCTGTG GGTGACTTGTTTAATTATGATGCACCTGGAGAGGAGCCATCTGGTATTGAGGAGGTAGAGCATTTTCTATCTGATTCTTC AATCCATGTTGATGTATCAAAGGAGGATAATATCATGGTAGATGCAGAGCAGATTGATTCTCATTCTCAGCGATTAACAG ATGGTGGGTTTGATGAAGATGCTAATGCATATTGCTTTTATGCTAGGGAAAATTATAAGAAAGGAGATCAGGTATTGCAC AACTCTTGCAAATTTTAACATATAAGTGGAGTATCTGTTTGCTTTCTGTTTTATTTTTATATGGTTAAAGTTTATCTTCA TTTTCCAGTTTTTATTTATCGTTTTACTATACTGTATTTGTCTTGTTTGAATTGCCTGTCCTTAGCTTAAGTTTATTCTT TATATCAAAATATGATGTTTATGCCCAATTGGTTAGGATTGTGTTTAGGAGCAGTGATGCTTAATACTATCTTTTTTTAA GAGAAGTTTAGGTAGAGGGAGAGGCTACTTCATTTTAAGGTTGGGACATGTTATAAGTTTTGGAGAAGACTTACGAAGGA CCTATTTTTGAAGGACCACTTGGAGGAACACAATGTAAGACCTACTAGTTGAACTAGTCCTTATTGGAGATGTTTAATGC AATTCAACTGTAGTCTAACTATGAAACTTATAAATGCTAGTTCAAATATGGGAGAAGCGTGTTGATAAATTATGTTTCAG CTCCGTTTTGAAATTCAACTCAACATCAGGCTCAATACATGACTGTGGGAGAGGCGTGTTTGGTGTTGATAAATTATGTT TCAGCATCATTTTGTTTTTTCTATATTTTGATTTGTCTTATCCAGTTATGTATTGCGATGAAAGTCCATTCATGTTGCCC TCAACTAATATCCAAACACACTTAGAAGACAAGCTTATATTTAGGATATGCAGCTGTAAATATAACTGCTTTTGGTCTGC AGCTCTGCACATCAAATTTAGCATGAGATTATTACCAATTTATCTTTCCAAGAAATATAATTTATCATAAATTCTAGGTA CAAAGCATTACTTGTTTGTCTCCTAGATATTGACTGTGAAACTTTGCCAGGGCTGATGTACCTCCTTCCATTCGAATAAT TTCATTTCTGTTTTCACTCTACCTTCTTTCCATTGTTTACATAATAGTGAATTATAAATTACCTTGTTATCGCCAGGTTT TATTATGCTATGGAACCTACACAAATTTGGAGCTCCTTGAACACTACGGGTTTCTCTTACCAGAAAATCCAAATGACAAA ATTTGTATCCCTTTGGAACCTGCTATATATTCTTCCACTTCATGGTCTAAGGAATCACTCTATATCCATCAAAACGGGAA GCCTTCCTTCGCACTACTAGCGGCACTGCGATTGTGGGCAACCCCTCAAAATAAAAGGCGGTCGGTTGGACATCTTGCAT ATTCTGGCTCTCAACTCTCTGCCGACAATGAAGTTTTTATAATGAAATGGCTATTAAAAGCCTGTGGTGCCGTCTTAAAG AATCTGCCAACATCTATTGAAGATGATAACTTGCTCATGAATGCAATTGATAGTCAAGATATTTTCATGGAGTTCACAAA ACTCATGTCTTCCAGGGATGAGGTTGATACCTTCTTAGAAGCTCATGATATAAAAGATGCTCATGGTTGTACAGATACAC TTCTATCTAGAAAAGCAAGAAGGTCCATGGATAGGTGGAGATTAGCTGTCCAATGGAGGCTTAGGTATAAGAAAGTCCTT GTTGATTGTATATCTTATTGCAATGAGAAACTAAATTCTTTGATGAAATAGTGCTCTGATGGACTTGGTTGCAATAGTGA ACTCTTTTCCTTTTCTGTTATCTTTCTTGAGATTTTAGTGGAAAAGCTTAAATAATAAAAACAGGAAAGCTAGCCTTATG CAACAGTACTTTTGGTTTGACCACATATATCTTCCGTGGGAAGCAATACTGTTCAAGCTGGAAGTATCCATATTTTTGTA GGATTAGCTCTCTCAACGTGTCAGCGGTGGTTTTTCC
CDS sequence (LotjaGi1g1v0100500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGTCACAGAAAAAGCTGTACTAAAAGCCAAATCAGAGTGGAAAGAAGCTCATGCTTTGATGGATGATCTCATGTT TAAGCCCCGGCTTTTAACATTTAAGGCTTGGGTTTGGGCTGCTGCAACGATTTCTTCCAGGACATTGCATATACCTTGGG ATGAAGCTGGTTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAGAGGAGCCATCTGGTATTGAGGAG GTAGAGCATTTTCTATCTGATTCTTCAATCCATGTTGATGTATCAAAGGAGGATAATATCATGGTAGATGCAGAGCAGAT TGATTCTCATTCTCAGCGATTAACAGATGGTGGGTTTGATGAAGATGCTAATGCATATTGCTTTTATGCTAGGGAAAATT ATAAGAAAGGAGATCAGGTTTTATTATGCTATGGAACCTACACAAATTTGGAGCTCCTTGAACACTACGGGTTTCTCTTA CCAGAAAATCCAAATGACAAAATTTGTATCCCTTTGGAACCTGCTATATATTCTTCCACTTCATGGTCTAAGGAATCACT CTATATCCATCAAAACGGGAAGCCTTCCTTCGCACTACTAGCGGCACTGCGATTGTGGGCAACCCCTCAAAATAAAAGGC GGTCGGTTGGACATCTTGCATATTCTGGCTCTCAACTCTCTGCCGACAATGAAGTTTTTATAATGAAATGGCTATTAAAA GCCTGTGGTGCCGTCTTAAAGAATCTGCCAACATCTATTGAAGATGATAACTTGCTCATGAATGCAATTGATAGTCAAGA TATTTTCATGGAGTTCACAAAACTCATGTCTTCCAGGGATGAGGTTGATACCTTCTTAGAAGCTCATGATATAAAAGATG CTCATGGTTGTACAGATACACTTCTATCTAGAAAAGCAAGAAGGTCCATGGATAGGTGGAGATTAGCTGTCCAATGGAGG CTTAGGTATAAGAAAGTCCTTGTTGATTGTATATCTTATTGCAATGAGAAACTAAATTCTTTGATGAAATAG
Protein sequence (LotjaGi1g1v0100500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWVTEKAVLKAKSEWKEAHALMDDLMFKPRLLTFKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEEPSGIEE VEHFLSDSSIHVDVSKEDNIMVDAEQIDSHSQRLTDGGFDEDANAYCFYARENYKKGDQVLLCYGTYTNLELLEHYGFLL PENPNDKICIPLEPAIYSSTSWSKESLYIHQNGKPSFALLAALRLWATPQNKRRSVGHLAYSGSQLSADNEVFIMKWLLK ACGAVLKNLPTSIEDDNLLMNAIDSQDIFMEFTKLMSSRDEVDTFLEAHDIKDAHGCTDTLLSRKARRSMDRWRLAVQWR LRYKKVLVDCISYCNEKLNSLMK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 341 | 340 | 8.9E-91 | – | |
| PANTHER | 2 | 341 | 340 | 8.9E-91 | – | |
| SUPERFAMILY | 21 | 163 | 143 | 2.03E-17 | – | |
| SUPERFAMILY | 155 | 339 | 185 | 9.42E-9 | ||
| Pfam | 193 | 327 | 135 | 2.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0100500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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