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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036464
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.645s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0100500.1
n.a. Protein SET DOMAIN GROUP 40; TAIR: AT5G17240.2 SET domain group 40; Swiss-Prot: sp|Q6NQJ8|SDG40_ARATH Protein SET DOMAIN GROUP 40; TrEMBL-Plants: tr|V7B812|V7B812_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0100500 LjG1.1_chr1 15267350 15271066 -
2 domain predictions
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LotjaGi1g1v0100500.2
n.a. SET domain group 40 protein; TAIR: AT5G17240.1 SET domain group 40; Swiss-Prot: sp|Q6NQJ8|SDG40_ARATH Protein SET DOMAIN GROUP 40; TrEMBL-Plants: tr|G7KFS1|G7KFS1_MEDTR SET domain group 40 protein; Found in the gene: LotjaGi1g1v0100500 LjG1.1_chr1 15267362 15271008 -
2 domain predictions
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LotjaGi2g1v0086200.1
n.a. Methyltransferase; TAIR: AT5G14260.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q9XI84|RBCMT_ARATH [Fructose]-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|G7KNL1|G7KNL1_MEDTR Rubisco methyltransferase family protein; Found in the gene: LotjaGi2g1v0086200 LjG1.1_chr2 24885601 24893994 -
3 domain predictions
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LotjaGi2g1v0086200.2
n.a. Methyltransferase; TAIR: AT5G14260.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q9XI84|RBCMT_ARATH [Fructose]-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|G7KNL1|G7KNL1_MEDTR Rubisco methyltransferase family protein; Found in the gene: LotjaGi2g1v0086200 LjG1.1_chr2 24888817 24893610 -
3 domain predictions
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LotjaGi4g1v0089800.1
n.a. Protein N-methyltransferase; TAIR: AT1G14030.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A072UM69|A0A072UM69_MEDTR Rubisco large subunit N-methyltransferase; Found in the gene: LotjaGi4g1v0089800 LjG1.1_chr4 11912219 11916168 +
3 domain predictions
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LotjaGi4g1v0300300.1
n.a. SET domain-containing protein, putative; TAIR: AT2G18850.1 SET domain-containing protein; Swiss-Prot: sp|Q9XI84|RBCMT_ARATH [Fructose]-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|I1MSR3|I1MSR3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0300300 LjG1.1_chr4 67452177 67458145 +
2 domain predictions
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LotjaGi4g1v0456600.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G24610.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q5ZML9|SETD3_CHICK Histone-lysine N-methyltransferase setd3; TrEMBL-Plants: tr|A0A0L9T8E4|A0A0L9T8E4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456600 LjG1.1_chr4 82809541 82813380 -
3 domain predictions
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LotjaGi4g1v0456600.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G24610.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q5ZML9|SETD3_CHICK Histone-lysine N-methyltransferase setd3; TrEMBL-Plants: tr|A0A0L9T8E4|A0A0L9T8E4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456600 LjG1.1_chr4 82810005 82813093 -
3 domain predictions
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LotjaGi4g1v0456600.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G24610.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q5ZML9|SETD3_CHICK Histone-lysine N-methyltransferase setd3; TrEMBL-Plants: tr|A0A0L9T8E4|A0A0L9T8E4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456600 LjG1.1_chr4 82810005 82813093 -
3 domain predictions
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LotjaGi5g1v0196700.1
n.a. SET-domain protein lysine methyltransferase family protein; TAIR: AT3G56570.1 SET domain-containing protein; Swiss-Prot: sp|P38222|RKM3_YEAST Ribosomal lysine N-methyltransferase 3; TrEMBL-Plants: tr|V7BDL1|V7BDL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0196700 LjG1.1_chr5 49244718 49250200 -
3 domain predictions
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LotjaGi6g1v0025400.1
n.a. Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0R0GH45|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400 LjG1.1_chr6 4580010 4586822 -
3 domain predictions
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LotjaGi6g1v0025400.2
n.a. Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0R0GH45|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400 LjG1.1_chr6 4581421 4586653 -
3 domain predictions
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LotjaGi6g1v0025400.3
n.a. Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0R0GH45|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400 LjG1.1_chr6 4581421 4586683 -
3 domain predictions
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LotjaGi6g1v0245200.1
n.a. Protein N-methyltransferase; TAIR: AT4G20130.1 plastid transcriptionally active 14; Swiss-Prot: sp|Q84JF5|PTA14_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14; TrEMBL-Plants: tr|A0A0R0I3Y4|A0A0R0I3Y4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0245200 LjG1.1_chr6 55757861 55763256 -
3 domain predictions
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LotjaGi6g1v0245200.2
n.a. Protein N-methyltransferase; TAIR: AT4G20130.1 plastid transcriptionally active 14; Swiss-Prot: sp|Q84JF5|PTA14_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14; TrEMBL-Plants: tr|B9GYG2|B9GYG2_POPTR Uncharacterized protein; Found in the gene: LotjaGi6g1v0245200 LjG1.1_chr6 55758390 55762780 -
3 domain predictions
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