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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0104800 |
| Transcript ID | LotjaGi1g1v0104800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT2G30520.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q682S0|RPT2_ARATH Root phototropism protein 2; TrEMBL-Plants: tr|G7K0V9|G7K0V9_MEDTR Root phototropism-like protein; Found in the gene: LotjaGi1g1v0104800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16187382..16191953) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTCTTCTTCTTAAAACTGTTTTTTAAAATTGATTCTGAAAATTATTTTAAAAACTGAAAATAAGACTGCAATCAACA CACCCTAAAATTGTGAGGCCTCACTTGGATTGTTAGTCTTGTATGATGATCATTGACCTATTGACATTTCACAGTCAACC ACATTTTGTCAGGATTATTATTTCAATTGTTTTTTAAAAAAATATCTTATTATCTCCTTTTCATTATAAAAACCCCTTCA TTGTACTCTAAACATGATTGAACAAAGTGGAATATTCCCAAACTACCATAAATACAAGGTAAACTATATTAATCAAGGCT TAATTGCACTTTTGGTCCCCCAACTATGGTCTTCCTGCGAAAATCGTCCCCAAACTTCAAAATTAGCAAAAAACGTCCTC AACGTTTACATATCATTGCAAAATTGGTATGTTGTTTGCCTTCAGTGAGAAAACTAACGTGAGAAGCTGATGTGGCTCCC TCACGCGTGTCTCACATGACTTTCTTGAGAGAGATTGATGACAGGGCAAGTCACATGTTTCTCACGTGACCCTAAAATGG TATTCAGGTCTAATTAGGGTTTGCAATTTCATAAGATAAGGGACCCAAATTTAGGATCACGTGAGAAGCATCTGACTTGT TCAGTCATCATTCTCTCTAAAAAAAGTCACATGAGACACGCGTTAGGAAGCTTCATGAGTTTCTCACGTTAATTTTCTCA CGGAAGGCAAACGACAGACCAATTTTGCAACGGCATGTAAACGTTGAGGACGTTTTTTGCTAATTTTTAAGTTTGAGGAC GATTTTCGCAGGAAGGCAATAGTTAAGGACCAAAAATGCAATTAAGCCATTAATCAATGATAAATCTTGACTACACTTTG AACTTTTTTATAAAAACGGTTAAACGTTAAAACCAATTTTGTGAAGTTAATAAACAGAAAATGAAGATTCACGAGAAGGG AAAAGGCAAGATAAATCTAGTCAAAGAGGAGAAAAACAGTTGGCAGATGGAGATAGTGCATGTAATAAGATCCACTTAAG CCAATAAGAAATATCAATGTAGAATTCAACCTTCCCATTTGTGTAGAAGCAGCTCTCATAGTAGGGAAGGGGAGATAATG ATGTAGAATATATTAATAAGATATTTGGTTTCACATTGAAATCTTTCAGAATAATTTCATCATCAAAGCTACTCTAACTA ACTTCTCTCAGAGGAACTTCTACTTCTACTATAAAAAAATTCCGAGAATCTAAATATGCACTAACTTAAAAGTAATCACT TGCCTGAAAAGGCTAGATAACAACAATTTGACATGTTTGGTTTCTCAATAAAAACTTTCTTAATCACTTGAACTTTCACA AAGCTACTCTAAGTAACTTCTGCAAAAGCACTTCTACTTCTATCCTGAATATCTGACGAGTGTCTAAACATTCACTAACT TAAAAAGGAATAACTTGCCTAAGAAGGTCAGATAACAGCAATTTGATAACACGTGTGGTTATTTTCTAAAGTAAAAATCT AACAAGTGTCCAAAGATACATGCACTAGAGGAATCACTAGCTTGGAAAGTTAAGATATACCAGCAATTTGATGAAAAAGA AAGCATGATCCACTGGGACCACTTGACACACTCACAACTCATGCAGATAAACTCAATAAAGACATGATTATGAAATGAAT CTACTGGGTTCAAACATCTCCCTATAACAACCAACCATCATCATGTGAATTATAAACCAACTGTTCCTCTCAAACCCCAA ACACAAATTAAAAACACAAAGAAAACCAACTTTTAACTACATCAGCTCAATTAAGCTCATGGCAGCTCCCAACCCCAACA GACTCTCCCTTGCCATGGAGAGAACAGGGCAATGGTAAACAGAACTTCACTCTCAATCTTCAAACCCATTTTGTTAAATT AATTGTTCTTCATTGCATAATCTTATGAATCAATTTGTAACTTGCATTATTGCAGGGTTTTCTCTCAAGAAATCCCAAGT GATGTTACAGTTACAATTGGAGAAGCTGATTATTCTCTCCATAAGGTACCAAAATATGCATTGCATGGAAAATTGATGAT GCTTTTTCTTTATTTTCAATTCAAAATGGTTCAGATTCTAATTAGAAATTGTTAACAGTTCATGCTGGTAGCAAAGAGCA ACTACATCAGGGAGCTGATAATAGAAGCAGAGGACAGTGATCTCACCAGAATAGACCTCTCTGACATCCCCGGAGGCCAA GAAGCTTTCGAAAAGGCGGCGAAATTCTGCTACGGCGTCAACTTCGAGATCACCGTCCACAACGTCGCCGCGCTCCACTG CGCCGCCGTGTTCCTCCAGATGACAGAAGAGTACTGCGACGGCAACCTCGCCGGAAGAACAGAAGGCTTCCTCTCTCAGG TCGCCTTCACGAATCTCACGGGCGCCGTCGTTGTCCTCAACTCCTGCCGGCAGTTTGTCCCCGTCGCCGAAGAAATCAGC CTCCTCGACCGCTGCGTCGAGGCCGTCAGCTCTATGGCGTGCAACGAGGCAACCTTCCCCACCCGTTCACCGCCGAATTG GTGGACGGAGGAGCTCGCCGTCCTCGACATCGATTCGTTCGGAAAAGTCATCGCCGCCATGAAGCAGCGCGGCGCCAAGT ACCTAACCCTCGCCGGAGCGCTGATTACATACACCGAACGCGCACTCCGGGAGCTAGTGCGAGACCAAACCGGCGGTGGC GGCGGAGGAATCAAGTCACCGGAGCCCGGCGATTCCGAATCCGAACGACGCGATCTTCTGGAATCGATCGTCAGTCTCTT CCCATCTGACAAAGCGGCTTTTCCGATCAACTTCCTCTGCTGCCTCCTCCGCTGCGCCACCTACCTCCGCGCCTCCAGCG CGTGCAAGCGCGAGCTCGAGAAGCGGATCTCGGAGATTCTGGAGCACGTGACGGTTGACGATCTCATGGTGCTGTCGTTC ACCTACGACGGCGAGAGGCTTCTGGATCTGGACAGCGTGCGGAGGATCATCTCCAGTTACATGGAGAAGCAGAAGAGCGC GTCGGTGTTCAACGGCGGCGGTAGCTTCAGGGACGATTGCTCCGCCGTGACGCAGCGGATTGCTAAAACTGTCGACGCTT ACCTCGCCGAGATCGCCGCGTACGGCGAACTCGCCATCTCGAAGTTCAACGGCATCGCCGTTCTCGTCCCCAAAGGCGCG CGAAAACTCGACGATGATCTATACCGCGCCGTGGATATCTACCTCAAGGTATGGAATAGCATACTCTAGTTTCCAATAAG GACTAGAAATAATATTTACTATATTTCCAGGGACTAAAAACATACAACTGACTTTAGTTACTAACGACGCGACACGTGGG TGCTCGTGATGTTTCAGGTGCACCCGAACCTTGATGAGTTAGAGAAGGAGAAGGTGTGTAGTGTGATGGACCCGCTGAAA CTGTCTGGTGAGGCACGTGTGCACGCGTCGCAGAACAAGCGTTTGCCGGTGCAGGTGGTGCTTCACGCGTTGTACTATGA TCAGTTGAAGATGAGGAGCGGCGCAGCGGAGGAACGGGAGGCGGCGATGGCGAGGGATCACTTGATGACAGACGTGTCGT TGGTGAGGGAGAACGAGGAGTTGAGGTCAGAGGTGATGAGGATGAAAATGTACATTTCTGATATTAAGAAGAACGGTGGT GACGGAACGACGTCGTCGAAGAGGGAGGCGGCGTCGGTGTCTACGAAAAAGCACACGTTCTTCTCTTCAGTGTCTAAGAA ATTGGGCAGGCTGAACCCGTTTAAGCACGAGTCTAAGGACACGTCTCATATTGATGATGGGCCTGGTGTGGACTTGACCA AGCCCAGAAGAAGAAGGTTCTCGATCTCTTAGATTGTTTTATTTTGGATTGTTACTGGGTAGTACTTGATTTTATTATAA GGAGCATCCTAGTTTCAACTCGGCTTTGTATGGCTGACACACGTTGGCTCAGTTGATAAGCATGAAACACTTTTCCTCGG TAGCTTGTGTATTCGATTCCTACTATGATGTGAGGCTCTGTTGGTGGACAATTTATAAGTAGCTTTGTAAGCGACTTGTG GTTCTAAAGGCATGTCTTGACTAATAGAGGTGACCGATGCCAAACTCACCAAAACTTTTTGTTAAAAAAATACTCAGCTT TGTATGGTGGGGTATGTTGATTAGGTTTCAAATTTGTTTTTCTTTTGCTAGTAACTTTTTTTTTCTCTTTTCGTGTTCTT ATGTTGTGTATTTGCAGCATTCATTGTAAAGGGCGTGTATACTATACTATGTAGTAAAAGGGGAAAAGTGTTGTATATAG CTTTGGATGGACTATGAGTATGGAAATATGATTGTGCTTCGTTTTCTAAGTCCATAGCTTGATTCACTCTAGTTGATTTT GCTCTACAAATGTTTCATAGATACCTGACTTGAAGGTGTTTCTTGCAATTCAGGTGTTTCTCTACAAATGTATATAGCTT GATTCATGGCTTCTAGGAAAAACATATTTTCTCATATTGTTGAATTTGTTGCAATCCTGTAACTATAATTGCACTCAAGA TTCATTGACCAG
CDS sequence (LotjaGi1g1v0104800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTCCCAACCCCAACAGACTCTCCCTTGCCATGGAGAGAACAGGGCAATGGGTTTTCTCTCAAGAAATCCCAAG TGATGTTACAGTTACAATTGGAGAAGCTGATTATTCTCTCCATAAGTTCATGCTGGTAGCAAAGAGCAACTACATCAGGG AGCTGATAATAGAAGCAGAGGACAGTGATCTCACCAGAATAGACCTCTCTGACATCCCCGGAGGCCAAGAAGCTTTCGAA AAGGCGGCGAAATTCTGCTACGGCGTCAACTTCGAGATCACCGTCCACAACGTCGCCGCGCTCCACTGCGCCGCCGTGTT CCTCCAGATGACAGAAGAGTACTGCGACGGCAACCTCGCCGGAAGAACAGAAGGCTTCCTCTCTCAGGTCGCCTTCACGA ATCTCACGGGCGCCGTCGTTGTCCTCAACTCCTGCCGGCAGTTTGTCCCCGTCGCCGAAGAAATCAGCCTCCTCGACCGC TGCGTCGAGGCCGTCAGCTCTATGGCGTGCAACGAGGCAACCTTCCCCACCCGTTCACCGCCGAATTGGTGGACGGAGGA GCTCGCCGTCCTCGACATCGATTCGTTCGGAAAAGTCATCGCCGCCATGAAGCAGCGCGGCGCCAAGTACCTAACCCTCG CCGGAGCGCTGATTACATACACCGAACGCGCACTCCGGGAGCTAGTGCGAGACCAAACCGGCGGTGGCGGCGGAGGAATC AAGTCACCGGAGCCCGGCGATTCCGAATCCGAACGACGCGATCTTCTGGAATCGATCGTCAGTCTCTTCCCATCTGACAA AGCGGCTTTTCCGATCAACTTCCTCTGCTGCCTCCTCCGCTGCGCCACCTACCTCCGCGCCTCCAGCGCGTGCAAGCGCG AGCTCGAGAAGCGGATCTCGGAGATTCTGGAGCACGTGACGGTTGACGATCTCATGGTGCTGTCGTTCACCTACGACGGC GAGAGGCTTCTGGATCTGGACAGCGTGCGGAGGATCATCTCCAGTTACATGGAGAAGCAGAAGAGCGCGTCGGTGTTCAA CGGCGGCGGTAGCTTCAGGGACGATTGCTCCGCCGTGACGCAGCGGATTGCTAAAACTGTCGACGCTTACCTCGCCGAGA TCGCCGCGTACGGCGAACTCGCCATCTCGAAGTTCAACGGCATCGCCGTTCTCGTCCCCAAAGGCGCGCGAAAACTCGAC GATGATCTATACCGCGCCGTGGATATCTACCTCAAGGTGCACCCGAACCTTGATGAGTTAGAGAAGGAGAAGGTGTGTAG TGTGATGGACCCGCTGAAACTGTCTGGTGAGGCACGTGTGCACGCGTCGCAGAACAAGCGTTTGCCGGTGCAGGTGGTGC TTCACGCGTTGTACTATGATCAGTTGAAGATGAGGAGCGGCGCAGCGGAGGAACGGGAGGCGGCGATGGCGAGGGATCAC TTGATGACAGACGTGTCGTTGGTGAGGGAGAACGAGGAGTTGAGGTCAGAGGTGATGAGGATGAAAATGTACATTTCTGA TATTAAGAAGAACGGTGGTGACGGAACGACGTCGTCGAAGAGGGAGGCGGCGTCGGTGTCTACGAAAAAGCACACGTTCT TCTCTTCAGTGTCTAAGAAATTGGGCAGGCTGAACCCGTTTAAGCACGAGTCTAAGGACACGTCTCATATTGATGATGGG CCTGGTGTGGACTTGACCAAGCCCAGAAGAAGAAGGTTCTCGATCTCTTAG
Protein sequence (LotjaGi1g1v0104800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPNPNRLSLAMERTGQWVFSQEIPSDVTVTIGEADYSLHKFMLVAKSNYIRELIIEAEDSDLTRIDLSDIPGGQEAFE KAAKFCYGVNFEITVHNVAALHCAAVFLQMTEEYCDGNLAGRTEGFLSQVAFTNLTGAVVVLNSCRQFVPVAEEISLLDR CVEAVSSMACNEATFPTRSPPNWWTEELAVLDIDSFGKVIAAMKQRGAKYLTLAGALITYTERALRELVRDQTGGGGGGI KSPEPGDSESERRDLLESIVSLFPSDKAAFPINFLCCLLRCATYLRASSACKRELEKRISEILEHVTVDDLMVLSFTYDG ERLLDLDSVRRIISSYMEKQKSASVFNGGGSFRDDCSAVTQRIAKTVDAYLAEIAAYGELAISKFNGIAVLVPKGARKLD DDLYRAVDIYLKVHPNLDELEKEKVCSVMDPLKLSGEARVHASQNKRLPVQVVLHALYYDQLKMRSGAAEEREAAMARDH LMTDVSLVRENEELRSEVMRMKMYISDIKKNGGDGTTSSKREAASVSTKKHTFFSSVSKKLGRLNPFKHESKDTSHIDDG PGVDLTKPRRRRFSIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 576 | 570 | 5.3E-278 | ||
| PANTHER | 7 | 576 | 570 | 5.3E-278 | ||
| Gene3D | 11 | 116 | 106 | 8.2E-12 | – | |
| SUPERFAMILY | 12 | 112 | 101 | 7.61E-16 | ||
| CDD | 19 | 122 | 104 | 2.85319E-34 | – | |
| Pfam | 22 | 111 | 90 | 6.2E-8 | ||
| ProSiteProfiles | 27 | 95 | 69 | 11.461 | ||
| SMART | 27 | 123 | 97 | 0.0073 | ||
| ProSiteProfiles | 182 | 463 | 282 | 74.23 | ||
| Pfam | 182 | 438 | 257 | 6.5E-77 | ||
| MobiDBLite | 231 | 250 | 20 | - | – | |
| MobiDBLite | 510 | 529 | 20 | - | – | |
| MobiDBLite | 511 | 529 | 19 | - | – | |
| MobiDBLite | 544 | 576 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Phototropism | The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it. |
Expression pattern of LotjaGi1g1v0104800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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