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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0105300 |
| Transcript ID | LotjaGi1g1v0105300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 2 subunit beta; TAIR: AT5G20920.1 eukaryotic translation initiation factor 2 beta subunit; Swiss-Prot: sp|P55871|IF2B_MALDO Eukaryotic translation initiation factor 2 subunit beta; TrEMBL-Plants: tr|I3SDH8|I3SDH8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0105300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16257973..16262964) extracted from Lotus japonicus Gifu genome v1.2.
ACACACAGGCCACCACCCTCTTCGTCTCAAAACATTCGATTCTCTTTGCTCTCACTTCTAGGGTTTTCTCTGCGCAATCT CTGGTTTTTGCAGCTTCCGTTTCATTCAGGTTTTCTATTTCAATTCGATTTTCCGTTGATTTCGCTTGCGTTTTTCACAT TGCGATCACTAAGATCGAATCATGTATTGTTCTCGTTTCTTATCTGGTTTTGATTATGTTAGGGGCAAATGAATTGTTGT TTAGTTTCTTTTGTAAAAGTTGAAGCTTTTTTATCACAAGCTAAACCGAACACACACGCGCACAATTGTTATGTTTCTGC AGTGGACTAGGGTTTTTGTAATATCTAGATGAGTGTTTTTTCATGTGGTTCTGGGGGAGGATTTGGTGATGTTTTTGTCG CGGTTAGCGAAGTAGCCTATGACTTTTAGGGATTGACACTTGAGGACTGAGGTTTTGATTGTTATTGTAGTAGTGTTTTT TGTTTTATCTTGAGGCATGTTGAGGTTTTGATTTGTTATTAGGATGTTTTTTTTGGCGCGGTTAGCTATTTGGGAGTTGG GACTTGTTCATAGAAGAACATTGTGTGTTTGATTTCCCTACAAGGGATGGTTTTACACAAATTGTAGGAAAACAATATTA ACAGCAACATAATTAATAATCTTCTATTTTATCCTCCTCTGTCCATACTTTTTTATATTTTATATATGTTCCTAATCATG TATTAATTTTATGTTACTTGTGTTGCAGCAATCATGGAAGACGAGTCACAAAATGATATGAAGGAGGAGGTTGCAGAAGT AAGTCTATATTCTATAATTTTAGAAATTCTTTACCACTTTGTGTTTCCCTTGAGTAGCCATAATTGCCATAAACTCAGGT TTTAAAGGTTTTTTGTTGTTGTAAATTGATGGTATTGTAAATGCATGATATCTTGGTCACTGACCTCCTTGGTTAGGTAG TACTTTATTTAGTTCTAATGGTACCGTCTTCTGATGCCTGAATCTTTAAATTGCAGTTTGCACCACTTGATATGACTAAG AAGAAGAAGAAGAAGAAAATTACAATTGTAGATCCTGCTGATGACTCAGTGGACAAATTGGCGGAGAAGACAGAAAACCT GTCAGGTTTGTAAAATTTGACGAGCAACTTACTTCCATGGTTTTTATCTCCAATGCTCTCTGAAAATTGTGCTTACACTC TATTGATTCTTCATTACCTTTTGAACTGCAGTTTCTGATGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAAAAGAAAAA GAAGGCTGTAAGTCATACTTGCTCTTTCTGTCGTCATTCCAACGAAAAATTATCTCTTACGAGATTTTCAAGTCTTTGAT TTAGGTGGTTTTTGGTTTGAAGCAATTTGATTCCTGAAGTTTGTTGCTTGATTGTAGGTTGATATCGGTAACCTAAATGA AGAGAGTGGAGAAGCAATTGAAGATTTGGATGGTAAATAATTGAATTGCATGCCTAAAGCATAGTGGACTGTTTGTTGCT ACTGCAAGTAATATCTTGTGGGAAGTTAACCGAATACTCAACATTTGATAAATTTTGTTAGATCAAGCTGAAGATGATGA AGGAGAAGCAGCTGCTTTGCATGTTCGATATCCTTGGGAAGGGAGCGAACGTGATTATCAATATGAGGAGGTAAGTCTTA GTTAACGTGCTTTCAATTGGTTTTCTTATTTGAAATTTCAGTACCAAATTCTTTTTGTTCCACTTATCTTCTTCCCCTAG TTCTGAAAGTGTTTCTGAGCTGATTTTTCTTTTCATATGATCCTAATTATTTATTATTTATTTTGCAGTCTTTTTAGTTC TCCCCTTTAATTCTCCACACAAGTTTAGTAGGCTGTGTTCACTGCCCTGGGCTTTTTCTGATGGGATGATATTTGTGAAT CTCATGTGCTTGAAGGATTAGGATCCTCTCAAGTGAATTGTCAATTCAATTAGGAAACTCGAGAGAGTTAACAATTGAGA GGATCTTGATCCGCGCTTTAAGTTTTAAAATCGATGAATGTTAGTTAATGATTTACATGAGTCTTGGATTCTGTATTTAT GTGCACTTCATCTCAAATATCAAGAATTCCCACTCTTTTAGACTCCACTTTAGATCCAAAAAATCACCCAAAGCAATTTA GTCCACTGTATTGTGTTTTGACTATTTTTGGAAACTCCTCCCCCCAAATAAAAAATAAAAATAAAAATAAAAATCTCTTA GATTCTCAATGTCTTTCTGTGCAGCTTCTTGGCAGGGTCTTTAACATTCTACGGGAAAACAATCCAGAACTTGCTGGAGA TCGGCGGAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAGACTGTGTTTGTGAATTTTATGGATC TATGCAAAACGTATGTTGATATTTCATCTACTCTTTCTTGCTCACTGACACATTCATCTACTATTTCATCTACTCTTTCT TGCTCACTGACACATTGTTTTTGGCCATTATGAATTTTTTGCGCCTATGCAAAAGTATGTTGATATTTTATCTGTGCTTC TCTCTTTCTCTCTCCTCCCCCTCAAACACACACACGTACAAGTTCGTTACACACATTAAGATCTAAGTCGTTGTAAATTC ATCCTTTTATATCACCATTTTAGTCCTCCAAAAAGACTACTATGGTGAAGTTTTAGATTTTGAGTCTAATTTGGAATAGA ATTTCAAATGACTACGTGGTGACATTTTAAAATTGTGGTTCATTTGTCTTTGGATGACTCTCTAATCTCTATATATGTGT GTGTGTGTCGCTGGATGCATATAATGTGTGGGTGCTTTATATGCATCCACACACAGATCATGAATTTCCACTGCAGTTGT TATCAAGGAATATTATTGAACTGGTGTATCTATCTTAAAAGCATAACAATTATCTGGAGTTTTTCTTTTGAAGCATTGTT GTATGTGTTAATTATAATTTTTTTCTGTATTAATGTTATATGCTTGTCCCTATGCATGATTGCCTGCAAAATAAAAATTC AAGACATTCTACTGACCTATTGTTTCAATTCAGCTAGTGATGATAATCTTTTCGTGAATTATTATTATTCACTTGTTGAG TTTGTGTAATCCCCTGACATTCTTCTACCTTTAATATACTAATTTTTCCATAACCAATCTTTTAGGATGCATCGGCAGCC AGACCATGTCATGGCTTTCTTGCTTGCTGAAATGGGTACAAGTGGATCGCTAGATGGACAGCAGAGATTGGTAGTAAAGG GAAGATTTGCACCCAAGAACTTCGAAGGAATTCTTCGACGATATATCAGTAAGTATCAAAATTCTGTGGCAATAGTTATG GTTTGTGTTGAATTATATATTTTCCAGTTTTTTCCTTTTCCTTTTCAATAAATTCAGCTTACTAGAACAATAATTTTGTA AGACACTATTAGCCTATTGTTGTTGGATAGCTGTGTATTTGTGGCCATTGGTTGAAGTTGATATACTTTCTTTTTCAGAT GAATATGTCATTTGTCTGGGATGCAAGAGTCCGGACACTATACTTTCAAAGGAGAACCGTCTATTCTTTCTTCGTTGTGA GAAGGTGATTTTTCTTTGAACCTTTGCCTGGATCTCTTTTCTATGTTTTAGTTTTCATGCTGACCGTGTTTCCCTCCCAC CCCCGTCAACAAACTAAACAACTTGAAGATGATAGTTTCTATATATAGTTAGTTTTATTTATATCCTGTCTGAATGTTGT TTATTGTTAGTAGTTGTTCAATTTGTGGCCAAACATTTTAGTAGTTTTTTTTTTGTTTGTAAACTTAATGGACCATTTTC CCCACTTCTCAAGTCGCCAATTGTTGTTTATATTAAGTAGTGATACCAAATGATTCAAGGTTGTTTTCTCTGATGCTGAT AATAGTATTGTAAAATGCAAATTTGGTTGGAGATTGATTATATTATTGACATTTTACCATTCAATATCCTATAATACTGG TTTATTACTTTCAGTGTGGATCAGGAAGATCAGTTGCTCCAATTAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGAAC GCCGGGACATGATTTGGTCACACTTTTTGTCTTTGTTGAAACTGACTGGGGAAATGAACCTCTTATTGATTTTTTTCACA TTTATGATGTAACCCTTGCTCTCCAATTTTGAGTTTGTTTCAGTTATAGTATTTCTAAGGGTCATCATTGGTATCTCTAT CCCCTCTCCCCACCCGCTCCCTTTTTTAGGTGCAAGTGTAATTCTTTTAATGAAAATGATAGTTTGCTCATACTCTTGGA AATACTTAGGCCATTTAAGAAATAATTGTCCTGGAACTTGGAGTAGCTTATAGGAGCATGTGAATGTTGATTACTCTCAA ATATTAGTTGGCATCTTCTCTGTTGTTTTTGCATCATACGGGGTGAGAAGACCCGATTTGAGAGTAATCTTACAGGAGTA ATCTTATAAGCTGCTGTTTTTACATGTTAGACGGATTATATTAAACAATTCAGGTGTCTTCATCCAACGACCTAAGTATT TGGGATAATTGGTTCATGATAATAAAATTTTGATTATGAACAGCAAACGAAAACTGGAATGGGGTCTTTCTATGTCGATG GCACAAACTATACAACCTTGTTATTAATCCTAGTGATATCTGCATTGTTGATCTTTATATGCCACCATATGTTTACCAAG GCATCTCTGCATGAGATAATAGGTATATAGAAAGTAATTATTGTTTCGATTAAATTTGTCTTTTCATTTTTTATTGGTCT ATATAATCTTACCGAGAATAATCTAGACTACGATATGACAGCTTATTTTTTTTTTTGTATGAATACATATTGAATTATAA AAAGACTCAACATCCAACATCCGGACCCTAACAATGTCCTTGTAAAAGCTTTCAAGCCAGTCTCATCATCTGTCTCCATA TCCATTCAAATATACTGACACACAAATGTGGC
CDS sequence (LotjaGi1g1v0105300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACGAGTCACAAAATGATATGAAGGAGGAGGTTGCAGAATTTGCACCACTTGATATGACTAAGAAGAAGAAGAA GAAGAAAATTACAATTGTAGATCCTGCTGATGACTCAGTGGACAAATTGGCGGAGAAGACAGAAAACCTGTCAGTTTCTG ATGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAAAAGAAAAAGAAGGCTGTTGATATCGGTAACCTAAATGAAGAGAGT GGAGAAGCAATTGAAGATTTGGATGATCAAGCTGAAGATGATGAAGGAGAAGCAGCTGCTTTGCATGTTCGATATCCTTG GGAAGGGAGCGAACGTGATTATCAATATGAGGAGCTTCTTGGCAGGGTCTTTAACATTCTACGGGAAAACAATCCAGAAC TTGCTGGAGATCGGCGGAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAGACTGTGTTTGTGAAT TTTATGGATCTATGCAAAACGATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTGCTTGCTGAAATGGGTACAAGTGG ATCGCTAGATGGACAGCAGAGATTGGTAGTAAAGGGAAGATTTGCACCCAAGAACTTCGAAGGAATTCTTCGACGATATA TCAATGAATATGTCATTTGTCTGGGATGCAAGAGTCCGGACACTATACTTTCAAAGGAGAACCGTCTATTCTTTCTTCGT TGTGAGAAGTGTGGATCAGGAAGATCAGTTGCTCCAATTAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGAACGCCGG GACATGA
Protein sequence (LotjaGi1g1v0105300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDESQNDMKEEVAEFAPLDMTKKKKKKKITIVDPADDSVDKLAEKTENLSVSDGVETAFAGLKKKKKKAVDIGNLNEES GEAIEDLDDQAEDDEGEAAALHVRYPWEGSERDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVN FMDLCKTMHRQPDHVMAFLLAEMGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLR CEKCGSGRSVAPIKAGFVARVGRRNAGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 267 | 267 | 2.0E-139 | – | |
| PANTHER | 1 | 267 | 267 | 2.0E-139 | – | |
| SUPERFAMILY | 113 | 220 | 108 | 1.83E-32 | ||
| SMART | 138 | 247 | 110 | 7.1E-70 | ||
| Pfam | 138 | 246 | 109 | 2.9E-39 | ||
| Gene3D | 151 | 241 | 91 | 6.6E-34 | – | |
| SUPERFAMILY | 217 | 252 | 36 | 2.88E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi1g1v0105300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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