Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0107100 |
| Transcript ID | LotjaGi1g1v0107100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription repressor; TAIR: AT5G58360.1 ovate family protein 3; Swiss-Prot: sp|Q9LVL4|OFP3_ARATH Transcription repressor OFP3; TrEMBL-Plants: tr|I3S9L8|I3S9L8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0107100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16629159..16631809) extracted from Lotus japonicus Gifu genome v1.2.
GGACCTCCAACTTTATATTTTCCTTGTTATAACTAATCCTCCTCATTTTATACATCTTCCATTTCAGCTCATATGAATTT CAACACCTTTGGGGTATCACAACAAAAGCAACACTGAAAGTGAGTTTTTTGAAGTGCTTGAGTGATATCTCAAATGGGTA ACCACAGGTTCAAATTTTCAGATATGATACCAAATGCTTGGTTTTACAAACTAAAAGATATGAGCAAATCAAGGAAGCAA AATGCAGGTTCTCATGTGATGAAGAGCAAACCTACCTCACCAACAACAGCATCCCAAAGGTCACAGCCAAGATATTCACA TTATTTCTCCACTGAACCCTTTCACACCAAACACTTGAACATCCCTTTCAATGATTCACCAACAAGGTCCATATCCAAGA GAAGGTCAAGGAGAAAAACCATTTACAAGCCTTCAAATGATTGGACAAGTCCACATCAAGTCCAGTCACCAAACTATGAT GTTTCCTCCATTGAAAATTCATCTCAATCTGATCTCCAAGAATGTGTTAATTCTGAGTCTGAATGTGATGCCTTTTCTGT TCCTGACTTGCTAAATGGAATAGCCTCTAATTGCAGCTGCAGAGTTAGTTCTTCCACCAATGACATCGTCATTGACATGA AAAATGAATCCTTCCATGGAAATTCTCAAAAGCTAGATGAGTTTGATACAATTTCACAGACAAGTCTAGCTCCAATTTTG ACAAAGCAAGTGGAGTTTGATGATGAGGTAAGTGAAGCCACTGAAGTGAGAAGTTCAAATGAATCAGAGATTGATCAGTC TTTCTCTATCAAAATTTGCAAAGAGGAAACTAGTAGAACTCAAAGAAGGAGAAAGAAAAATTATAACTCTTCAGGCATAA GGCTTAGAGTCAATTCTCCAAAGCTAGGAAGCAGAAAAGTTCAAGGCTGTGCAAGAAGGAGTGTGTCATCTGGTGCAAGC AAAGATTCAAGGAATGCAGGATTTCCAGATGGATTTGCTGTTGTTAAGTCCTCATTTGATCCACAGAGTGATTTCAGGGA TTCAATGGTGGAGATGATTGTGGAGAACAAGATCCGGGAATCAAAAGATTTGGAGGATTTGCTTGCCTGCTATCTTTCCT TGAATTCAAGTGAATACCATGAGCTTATTGTTAAAGCATTTGAGCAAATTTGGTATGACATGGCTCAACTTAGAATGTAA CGATTTTAATAGTTATTCAATGCATGTTTATAGTCTTGTAACTACAACCACTCTCTAAATTAAATTTTGTTCTGAACTAT CTGGATTAAAAATTTGGTATTCTCATATAAAGAATATTCTCAATTTTTAACAATATGAAATGTGCAGAGAAACATGAAAT TTGGTGTCAAGAATAAATTTATTTTCTCTTTTCTATGGACTGCTATATCAGTATCCATTTCATGACTCAATCTCTGACTG GATGGTCTGATAATGGAGAAAACACTTTCTGAACTTTTTATGAAATTTTTTGTCTCAAGGGTTTTATTGACATCTTGCAT ACAATAAAATAAACACCATTTATATCTTAAGTACTATAGCCCAATTTTGGATCTCTGTGTAGCAGATTGTTTGGATGTGT TGGACACATATTCCAAACCACGTTAGGGAAGAAACTTCATATTGTAGCTTATGTGCTAACATGATTTTTAGGTCTAGATA TGGAGTCCAAATGTGCAGCAAAACATGCACTTAGTGTATTTTCTTAATCAGGTTTATGTGAGATCCTACAAGAATGAGAT GCCTGAACACCATCAAACTAGGACAGGAGGATGCATCACAAGTCAAGACAGTATGCATTTGCCAAACAGAAGTTGGACAC AGTGAAGGCACTAGACAATTGCAGGATTTGCAGCTTTGCATTTCAGGTCATATGAAAATCACCTTGAATGAAAAGTCTTC ATAATGTAGCCCTCTTTTAGCTACCTGCTAAATTAATAATCCTCAATGACATGAAAATGTCGTAGGTTTTGTTAAGAAAA AAACTACTAAGATTAGTATTCTGGGCCGAGACCCGACCAACTGGCCCTAAGTCACTGCACCGGTCTAAATGAGTAGGGCA TCCAGGTTAAACAAGTTAGCCCGTTAAAACTATGGTTAGGTGGTTAATTATGTCATGTGGCCGTTCAGTTATGTCACGTA AGCATGCTGCAGTTGCCGCCTTACAACTAAAGAGACATTGACGACGAAGCTGACACTAGGTATATATATGGTTCATGTGA TAAGCAAATGTGGATTCTAATAATTCTATTAATCTTCCTACACTTTAAGTTGGTTCATTGGCCTGGCTTGAACGTCAAAG TGTATTTTGTAGGTGCCTCACCACCACTGACTTGGAACCAGAAGTTGTGGAAGAACAATTGGTATTGGACATAGTTGTTT CTTAGTCAACGTTACAGTAAAGATGTTTCCCTCAATACAAGGTTTTGCCTCAAATACTAGCAAGTTGTACAGCTGACAAG TCCCTTTATATATACAGTAAAACATCTAAGGTCATGTTTCTTTCAGAAGTTTGCTAGAGACAGTTGCAGATCCTAGCTAG CTGTAATCTACCTCCGTTTGTAGTCCTATGAAACTGAAGTTTATGAATTTGTATTTCATAATCCATGCAGCATTGTAAAT TTATCTGTCAC
CDS sequence (LotjaGi1g1v0107100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAACCACAGGTTCAAATTTTCAGATATGATACCAAATGCTTGGTTTTACAAACTAAAAGATATGAGCAAATCAAG GAAGCAAAATGCAGGTTCTCATGTGATGAAGAGCAAACCTACCTCACCAACAACAGCATCCCAAAGGTCACAGCCAAGAT ATTCACATTATTTCTCCACTGAACCCTTTCACACCAAACACTTGAACATCCCTTTCAATGATTCACCAACAAGGTCCATA TCCAAGAGAAGGTCAAGGAGAAAAACCATTTACAAGCCTTCAAATGATTGGACAAGTCCACATCAAGTCCAGTCACCAAA CTATGATGTTTCCTCCATTGAAAATTCATCTCAATCTGATCTCCAAGAATGTGTTAATTCTGAGTCTGAATGTGATGCCT TTTCTGTTCCTGACTTGCTAAATGGAATAGCCTCTAATTGCAGCTGCAGAGTTAGTTCTTCCACCAATGACATCGTCATT GACATGAAAAATGAATCCTTCCATGGAAATTCTCAAAAGCTAGATGAGTTTGATACAATTTCACAGACAAGTCTAGCTCC AATTTTGACAAAGCAAGTGGAGTTTGATGATGAGGTAAGTGAAGCCACTGAAGTGAGAAGTTCAAATGAATCAGAGATTG ATCAGTCTTTCTCTATCAAAATTTGCAAAGAGGAAACTAGTAGAACTCAAAGAAGGAGAAAGAAAAATTATAACTCTTCA GGCATAAGGCTTAGAGTCAATTCTCCAAAGCTAGGAAGCAGAAAAGTTCAAGGCTGTGCAAGAAGGAGTGTGTCATCTGG TGCAAGCAAAGATTCAAGGAATGCAGGATTTCCAGATGGATTTGCTGTTGTTAAGTCCTCATTTGATCCACAGAGTGATT TCAGGGATTCAATGGTGGAGATGATTGTGGAGAACAAGATCCGGGAATCAAAAGATTTGGAGGATTTGCTTGCCTGCTAT CTTTCCTTGAATTCAAGTGAATACCATGAGCTTATTGTTAAAGCATTTGAGCAAATTTGGTTTATGTGA
Protein sequence (LotjaGi1g1v0107100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNHRFKFSDMIPNAWFYKLKDMSKSRKQNAGSHVMKSKPTSPTTASQRSQPRYSHYFSTEPFHTKHLNIPFNDSPTRSI SKRRSRRKTIYKPSNDWTSPHQVQSPNYDVSSIENSSQSDLQECVNSESECDAFSVPDLLNGIASNCSCRVSSSTNDIVI DMKNESFHGNSQKLDEFDTISQTSLAPILTKQVEFDDEVSEATEVRSSNESEIDQSFSIKICKEETSRTQRRRKKNYNSS GIRLRVNSPKLGSRKVQGCARRSVSSGASKDSRNAGFPDGFAVVKSSFDPQSDFRDSMVEMIVENKIRESKDLEDLLACY LSLNSSEYHELIVKAFEQIWFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 341 | 341 | 3.0E-82 | ||
| Pfam | 1 | 42 | 42 | 2.5E-20 | ||
| PANTHER | 1 | 341 | 341 | 3.0E-82 | – | |
| MobiDBLite | 28 | 53 | 26 | - | – | |
| MobiDBLite | 29 | 53 | 25 | - | – | |
| MobiDBLite | 69 | 115 | 47 | - | – | |
| MobiDBLite | 92 | 115 | 24 | - | – | |
| TIGRFAM | 281 | 341 | 61 | 1.6E-23 | ||
| ProSiteProfiles | 283 | 342 | 60 | 19.071 | ||
| Pfam | 287 | 341 | 55 | 9.1E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0107100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…