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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0110700 |
| Transcript ID | LotjaGi1g1v0110700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G30300.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|I1JHJ4|I1JHJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0110700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17275512..17278109) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAATTCAAAAAAAACCATGTCTTATTTCTCTCTCTCACCAACCAAATTTTGCCATGTAAATTAAAAATCATTCTAAA TTTGCAACCACCTTGCACATCTTTTTTTTTCTTTAATTGTCGTGGCAAAGTTTCATTGGTAGGACAGAAAAATCAGACAC CCATGGGGACTGATGATTTTGGTCCCCAAGTTCTAACACTTCCTCCTATTTCTTCTCAACATATAAGCCATCACACCCCA CACCCTCTAGTGAGTTAACAAGCGCAAACTCAAATTTTCTCACTAGTATCTTCACCATGCCATCATCAAATTATTTTCAA TGGCTTAGCCTTGTGGGCATCATTTGGCTCCAAGCCATAAATGGCACAAATACAAATTTCCCTGCTTACTCCTCCCAGCT AAAACAATCCCTTTCCATGTCCCAAGTGCAGCTCAATAACCTTGCTTTTGCCTCTGATGCAGGCAAACTTTTTGGCTGTT TTTCTGGCATGGCTGCAGTTTACCTCCCTCTTTGGCTGGTCCTCATGATCGGTTCGACTCTCGGGTTAATCGGCTATGGT GTTCAATATCTCTTCATAACAAACCAAATTCCATCTCTGTCCTATTGGCATGTCTTCTGTCTAACAGTTCTAGCAGGGAA CAGCATTTGTTGGATCAACACTGTTTGCTATGTTGCCACAATAAGGAACTTCTCTTCTCATCGCCAAGTTGCCGTGGGAA TAACAACTAGTTACCAAGGATTAAGTGCAAAGATTTACACCAGCATTGTTGATGCTATCTCAGGACACAACAAAAAAGCT AGAATCTTTCTGTTTCTAAACTCTGTAATGCCTGTGATAGTTAGTCTTATTGCAGCTCCACTAGTCCGGGAAATTGAAAT CACAAAGGCTAAACACATGGATATGGGATTTGTTGTTATGTTTGTTGTTACAATTGGCACTGGATTATATGCTGTAATGA GTAGCTTGGAATTTGTGTCAAGTAAATTATCTCCAAGGAGTAACCTTATTGGAATTCTAGTGTCACTTTTTCTCCCTCTT ATAGTTCCAGTTTCTATGATGGTTAGTGCATTAGTGAGGTCTTGGCACACAAACAGAGAAAAACTAAGAGTCTATCATTT TACAGCAGAGGAAAGTCCAACCAAAAATGAAGAGAGGACAGACTCAGAAAATGAAGTTAAAGAGGATGAAACTTGTGATG AAGTTCAAGAGGATCAAGATATCAGAGAAGATATTGGAGTGATGTTGATGCTGAGAAGAGTAGATTTCTGGTTATATTTT TTTGTCTATTTATTTGGTGGAACACTTGGTTTAGTGTATCTTAATAACTTGGGACAAATAGCTGAATCCAGAGGTTGCTC TGGTACTTCATCATTGGTGTCTTTGTCTTCCTCTTTTGGGTTCTTCGGCCGTCTCATGCCATCTCTTGTGGACTACTTTT ACAGGTAACTTGGTCATTCTCTACCCTCCTCTTCATATTGTTCTAGTTTAGTTAGATTGTGATATAATTCAAATAATCAC TGTAAATGAGTTAGTTGACATACATCAATGAAAACAAACAAACTATTAAATTATGGGTTTTTAATTTTAAATTAATTGCG GTTGTAGTTATGTTGCGAAATTGCAGACAAATAAAGGTTGATGCGGCTGTAATTGCAGTCGCGATGCTATTACATAAACT CCAAAACCCTTTATGATCCGACTTCAATTGAGGGTTTGAACCACAATTTAAAACCTTGATACACCTCACTTTATCTTTCA TCACATTTTTACCTATTTTTCTTCATATTTTTATCTTATGTTCGTGTCAAATTATTGATCATATTTCTCATTTCTATATT TTCTGATTATTGGGGTGTACTTAGAGTTTCAACCGAACTTTTTCCTTAAATTATGCCTTTCCTCTTAATGACAATTTAAT TTGATATCTCCAACTACTTGGTATATATGTAGGGGCAAGAGTAGAATATCAAGGCCAGCTTCAATGGTTGCATTGATGGT TCCAACAGCAGGGGCATTCTTCTTACTTCTCAATAAAACTCACCTCACCCTATACATTAGCACTGCCATAATTGGTGTGT GTACTGGAGCAATCACTTCAATTGCTGTTTCCACAACCACCGAGTTATTTGGAACAAAGAGTTTCTCTGTGAACCATAAT TTGGTGGTGGCCAACATTCCAGTGGGGTCCTTTGTATTTGGTTACTTGGCTGCTATTGTTTACCACATGCAAGGACATGG ACATGGGAAATGCATGGGCATGGAATGCTACAGAAACACTTTCATCGTTTGGGGTTCCCTTTGTTTCTTTGGCACTTTCT TGGCTTTGATTCTACATGCAAGGACTCGCAAGTTTTACTCACAAAATACACTAGGGTAATTGGGCAAACATTTTTTTTCC ATTTATACACCTAGCTAGTCAACAATCCTAACACCCTTGAGTGTATATGTTGAAATATATGTAAATCACTTGTCTTTTAT ACAAGTCTTTTTTTTTTCTGCTAGCAAAAGAATATACATTTTCTCGATGAAAAATGTGGGCTCAACGCCCGAGAGGAATA AAATCAATAAAACCAAAAGACTACTCTTCTATGATAAA
CDS sequence (LotjaGi1g1v0110700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATCATCAAATTATTTTCAATGGCTTAGCCTTGTGGGCATCATTTGGCTCCAAGCCATAAATGGCACAAATACAAA TTTCCCTGCTTACTCCTCCCAGCTAAAACAATCCCTTTCCATGTCCCAAGTGCAGCTCAATAACCTTGCTTTTGCCTCTG ATGCAGGCAAACTTTTTGGCTGTTTTTCTGGCATGGCTGCAGTTTACCTCCCTCTTTGGCTGGTCCTCATGATCGGTTCG ACTCTCGGGTTAATCGGCTATGGTGTTCAATATCTCTTCATAACAAACCAAATTCCATCTCTGTCCTATTGGCATGTCTT CTGTCTAACAGTTCTAGCAGGGAACAGCATTTGTTGGATCAACACTGTTTGCTATGTTGCCACAATAAGGAACTTCTCTT CTCATCGCCAAGTTGCCGTGGGAATAACAACTAGTTACCAAGGATTAAGTGCAAAGATTTACACCAGCATTGTTGATGCT ATCTCAGGACACAACAAAAAAGCTAGAATCTTTCTGTTTCTAAACTCTGTAATGCCTGTGATAGTTAGTCTTATTGCAGC TCCACTAGTCCGGGAAATTGAAATCACAAAGGCTAAACACATGGATATGGGATTTGTTGTTATGTTTGTTGTTACAATTG GCACTGGATTATATGCTGTAATGAGTAGCTTGGAATTTGTGTCAAGTAAATTATCTCCAAGGAGTAACCTTATTGGAATT CTAGTGTCACTTTTTCTCCCTCTTATAGTTCCAGTTTCTATGATGGTTAGTGCATTAGTGAGGTCTTGGCACACAAACAG AGAAAAACTAAGAGTCTATCATTTTACAGCAGAGGAAAGTCCAACCAAAAATGAAGAGAGGACAGACTCAGAAAATGAAG TTAAAGAGGATGAAACTTGTGATGAAGTTCAAGAGGATCAAGATATCAGAGAAGATATTGGAGTGATGTTGATGCTGAGA AGAGTAGATTTCTGGTTATATTTTTTTGTCTATTTATTTGGTGGAACACTTGGTTTAGTGTATCTTAATAACTTGGGACA AATAGCTGAATCCAGAGGTTGCTCTGGTACTTCATCATTGGTGTCTTTGTCTTCCTCTTTTGGGTTCTTCGGCCGTCTCA TGCCATCTCTTGTGGACTACTTTTACAGGGGCAAGAGTAGAATATCAAGGCCAGCTTCAATGGTTGCATTGATGGTTCCA ACAGCAGGGGCATTCTTCTTACTTCTCAATAAAACTCACCTCACCCTATACATTAGCACTGCCATAATTGGTGTGTGTAC TGGAGCAATCACTTCAATTGCTGTTTCCACAACCACCGAGTTATTTGGAACAAAGAGTTTCTCTGTGAACCATAATTTGG TGGTGGCCAACATTCCAGTGGGGTCCTTTGTATTTGGTTACTTGGCTGCTATTGTTTACCACATGCAAGGACATGGACAT GGGAAATGCATGGGCATGGAATGCTACAGAAACACTTTCATCGTTTGGGGTTCCCTTTGTTTCTTTGGCACTTTCTTGGC TTTGATTCTACATGCAAGGACTCGCAAGTTTTACTCACAAAATACACTAGGGTAA
Protein sequence (LotjaGi1g1v0110700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSSNYFQWLSLVGIIWLQAINGTNTNFPAYSSQLKQSLSMSQVQLNNLAFASDAGKLFGCFSGMAAVYLPLWLVLMIGS TLGLIGYGVQYLFITNQIPSLSYWHVFCLTVLAGNSICWINTVCYVATIRNFSSHRQVAVGITTSYQGLSAKIYTSIVDA ISGHNKKARIFLFLNSVMPVIVSLIAAPLVREIEITKAKHMDMGFVVMFVVTIGTGLYAVMSSLEFVSSKLSPRSNLIGI LVSLFLPLIVPVSMMVSALVRSWHTNREKLRVYHFTAEESPTKNEERTDSENEVKEDETCDEVQEDQDIREDIGVMLMLR RVDFWLYFFVYLFGGTLGLVYLNNLGQIAESRGCSGTSSLVSLSSSFGFFGRLMPSLVDYFYRGKSRISRPASMVALMVP TAGAFFLLLNKTHLTLYISTAIIGVCTGAITSIAVSTTTELFGTKSFSVNHNLVVANIPVGSFVFGYLAAIVYHMQGHGH GKCMGMECYRNTFIVWGSLCFFGTFLALILHARTRKFYSQNTLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 4 | 520 | 517 | 7.3E-247 | – | |
| PANTHER | 4 | 520 | 517 | 7.3E-247 | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| Pfam | 8 | 252 | 245 | 2.7E-75 | ||
| CDD | 8 | 504 | 497 | 2.84193E-92 | – | |
| SUPERFAMILY | 14 | 516 | 503 | 1.22E-16 | ||
| Phobius | 26 | 45 | 20 | - | – | |
| Phobius | 46 | 66 | 21 | - | – | |
| Phobius | 67 | 71 | 5 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 72 | 94 | 23 | - | – | |
| Phobius | 95 | 105 | 11 | - | – | |
| TMHMM | 101 | 123 | 23 | - | – | |
| Phobius | 106 | 128 | 23 | - | – | |
| Phobius | 129 | 169 | 41 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| Phobius | 170 | 190 | 21 | - | – | |
| Phobius | 191 | 201 | 11 | - | – | |
| Phobius | 202 | 221 | 20 | - | – | |
| TMHMM | 203 | 222 | 20 | - | – | |
| Phobius | 222 | 236 | 15 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 237 | 260 | 24 | - | – | |
| Phobius | 261 | 323 | 63 | - | – | |
| Gene3D | 272 | 516 | 245 | 2.2E-9 | – | |
| MobiDBLite | 281 | 303 | 23 | - | – | |
| TMHMM | 324 | 346 | 23 | - | – | |
| Phobius | 324 | 342 | 19 | - | – | |
| Phobius | 343 | 361 | 19 | - | – | |
| Phobius | 362 | 382 | 21 | - | – | |
| Phobius | 383 | 393 | 11 | - | – | |
| TMHMM | 387 | 409 | 23 | - | – | |
| Phobius | 394 | 410 | 17 | - | – | |
| Phobius | 411 | 415 | 5 | - | – | |
| TMHMM | 416 | 438 | 23 | - | – | |
| Phobius | 416 | 442 | 27 | - | – | |
| Phobius | 443 | 453 | 11 | - | – | |
| TMHMM | 453 | 472 | 20 | - | – | |
| Phobius | 454 | 473 | 20 | - | – | |
| Phobius | 474 | 492 | 19 | - | – | |
| Phobius | 493 | 512 | 20 | - | – | |
| TMHMM | 493 | 512 | 20 | - | – | |
| Phobius | 513 | 524 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0110700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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