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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR21576
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 84 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.033s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0003819.1
n.a. nodule-specific protein Nlj70 [Lotus japonicus] gi|3329366|gb|AAC39500.1| chr0 1347954 1351041 +
1 domain prediction
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Lj0g3v0003829.1
n.a. nodule-specific protein Nlj70 [Lotus japonicus] gi|3329366|gb|AAC39500.1| chr0 1348642 1350711 +
1 domain prediction
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Lj0g3v0080199.1
n.a. nodule-specific protein Nlj70 [Lotus japonicus] gi|3329366|gb|AAC39500.1| chr0 31095989 31098233 -
1 domain prediction
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Lj0g3v0080209.1
n.a. nodule-specific protein Nlj70 [Lotus japonicus] gi|3329366|gb|AAC39500.1| chr0 31096222 31098233 -
1 domain prediction
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Lj0g3v0083849.1
n.a. Nodule-specific protein Nlj70 [Medicago truncatula] gi|357439945|ref|XP_003590250.1| chr0 33352473 33354381 +
1 domain prediction
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Lj0g3v0085639.1
n.a. PREDICTED: RRP12-like protein-like [Cicer arietinum] gi|502166370|ref|XP_004513872.1| chr0 34274937 34279183 +
1 domain prediction
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Lj0g3v0085639.2
n.a. PREDICTED: RRP12-like protein-like [Cicer arietinum] gi|502166370|ref|XP_004513872.1| chr0 34274937 34279183 +
1 domain prediction
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Lj0g3v0085649.1
n.a. PREDICTED: RRP12-like protein-like [Cicer arietinum] gi|502166370|ref|XP_004513872.1| chr0 34279306 34281678 +
1 domain prediction
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Lj0g3v0123689.1
n.a. nodule-specific protein Nlj70 [Lotus japonicus] gi|3329366|gb|AAC39500.1| chr0 55485927 55488101 -
1 domain prediction
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Lj0g3v0157609.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508716058|gb|EOY07955.1| chr0 73879900 73881747 +
1 domain prediction
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Lj0g3v0248269.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508716058|gb|EOY07955.1| chr0 128702861 128704683 +
1 domain prediction
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Lj0g3v0278159.1
n.a. nodule-specific protein Nlj70 [Lotus japonicus] gi|3329366|gb|AAC39500.1| chr0 144438554 144440734 -
1 domain prediction
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Lj0g3v0288039.1
n.a. Major facilitator superfamily protein isoform 2 [Theobroma cacao] gi|508784002|gb|EOY31258.1| chr0 149675599 149681231 -
1 domain prediction
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Lj0g3v0349019.1
n.a. PREDICTED: RRP12-like protein-like [Cicer arietinum] gi|502166370|ref|XP_004513872.1| chr0 183249484 183255009 -
1 domain prediction
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Lj1g3v0437880.1
n.a. PREDICTED: probable transporter MCH1-like [Cicer arietinum] gi|502098650|ref|XP_004491285.1| chr1 5937366 5942367 -
1 domain prediction
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Lj1g3v0437880.2
n.a. PREDICTED: probable transporter MCH1-like [Cicer arietinum] gi|502098650|ref|XP_004491285.1| chr1 5937366 5942367 -
1 domain prediction
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Lj1g3v0438930.1
n.a. Nodulin-like protein [Medicago truncatula] gi|357454707|ref|XP_003597634.1| chr1 5954920 5959124 -
1 domain prediction
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Lj1g3v1502550.1
n.a. Nodulin-like protein [Medicago truncatula] gi|357465041|ref|XP_003602802.1| chr1 17925372 17930588 +
1 domain prediction
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Lj1g3v1502560.1
n.a. Nodulin-like protein [Medicago truncatula] gi|357465041|ref|XP_003602802.1| chr1 17925372 17928715 +
1 domain prediction
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Lj1g3v3462920.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508716058|gb|EOY07955.1| chr1 40237070 40238892 -
1 domain prediction
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Lj1g3v3835580.1
n.a. Major facilitator superfamily protein isoform 1 [Theobroma cacao] gi|508710932|gb|EOY02829.1| chr1 43800655 43804579 -
1 domain prediction
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Lj1g3v3835680.1
n.a. nodulin-like protein, mRNA [Zea mays] gi|413920529|gb|AFW60461.1| chr1 43844981 43850870 +
1 domain prediction
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Lj1g3v3835690.1
n.a. Major facilitator superfamily protein isoform 1 [Theobroma cacao] gi|508710932|gb|EOY02829.1| chr1 43844981 43850381 +
1 domain prediction
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Lj1g3v4626560.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508726927|gb|EOY18824.1| chr1 55196975 55199187 -
1 domain prediction
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Lj1g3v4646620.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508716058|gb|EOY07955.1| chr1 55231020 55232893 -
1 domain prediction
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Lj2g3v1550100.1
n.a. Major facilitator superfamily protein isoform 1 [Theobroma cacao] gi|508778157|gb|EOY25413.1| chr2 24537336 24545946 -
1 domain prediction
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Lj2g3v1550100.2
n.a. Major facilitator superfamily protein isoform 1 [Theobroma cacao] gi|508778157|gb|EOY25413.1| chr2 24542650 24545946 -
1 domain prediction
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Lj2g3v1691120.1
n.a. PREDICTED: probable transporter MCH1-like [Cicer arietinum] gi|502161384|ref|XP_004512144.1| chr2 26110646 26113577 +
1 domain prediction
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Lj2g3v2380080.1
n.a. Os05g0475700 [Oryza sativa Japonica Group] gi|115464465|ref|NP_001055832.1| chr2 34080840 34083024 -
1 domain prediction
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Lj3g3v0040870.1
n.a. nodulin-like protein [Citrus trifoliata] gi|24461856|gb|AAN62343.1|AF506028_10 chr3 470787 474472 +
1 domain prediction
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Lj3g3v0642460.1
n.a. Major facilitator superfamily protein isoform 1 [Theobroma cacao] gi|508718453|gb|EOY10350.1| chr3 6898781 6904837 -
1 domain prediction
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Lj3g3v3053370.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508787233|gb|EOY34489.1| chr3 38069961 38071709 -
1 domain prediction
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Lj3g3v3475560.1
n.a. major facilitator family protein [Arabidopsis thaliana] gi|15236224|ref|NP_195221.1| chr3 42309350 42312980 +
1 domain prediction
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Lj4g3v1440930.1
n.a. Nodulin-like protein [Medicago truncatula] gi|357454707|ref|XP_003597634.1| chr4 22421421 22424117 +
1 domain prediction
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Lj4g3v1440940.1
n.a. Nodulin-like protein [Medicago truncatula] gi|357454707|ref|XP_003597634.1| chr4 22422519 22424117 +
1 domain prediction
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Lj4g3v1968820.1
n.a. Major facilitator superfamily protein isoform 2 [Theobroma cacao] gi|508784002|gb|EOY31258.1| chr4 27302924 27305663 -
1 domain prediction
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Lj4g3v1968830.1
n.a. Major facilitator superfamily protein isoform 1 [Theobroma cacao] gi|508784001|gb|EOY31257.1| chr4 27303380 27307082 -
1 domain prediction
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Lj4g3v2214850.1
n.a. PREDICTED: RRP12-like protein-like [Cicer arietinum] gi|502115621|ref|XP_004495248.1| chr4 30401237 30410281 -
1 domain prediction
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Lj5g3v0255520.1
n.a. Nitrate and chloride transporter [Medicago truncatula] gi|358346702|ref|XP_003637404.1| chr5 2082658 2089501 +
1 domain prediction
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Lj5g3v0641520.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508716058|gb|EOY07955.1| chr5 8795469 8797970 +
1 domain prediction
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Lj5g3v2220250.1
n.a. Nitrate and chloride transporter [Medicago truncatula] gi|358346702|ref|XP_003637404.1| chr5 31967962 31970113 -
1 domain prediction
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Lj5g3v2220260.1
n.a. Nitrate and chloride transporter [Medicago truncatula] gi|358346702|ref|XP_003637404.1| chr5 31979744 31981983 +
1 domain prediction
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Lj5g3v2220280.1
n.a. Nitrate and chloride transporter [Medicago truncatula] gi|358346702|ref|XP_003637404.1| chr5 31988081 31990305 +
1 domain prediction
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LotjaGi1g1v0110700.1
n.a. Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G30300.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|I1JHJ4|I1JHJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0110700 LjG1.1_chr1 17275512 17278109 -
1 domain prediction
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LotjaGi1g1v0187400.1
n.a. Nodulin / Major Facilitator Superfamily protein; TAIR: AT1G74780.1 Nodulin-like / Major Facilitator Superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A151S7C4|A0A151S7C4_CAJCA Putative transporter MCH1; Found in the gene: LotjaGi1g1v0187400 LjG1.1_chr1 36701847 36710492 -
1 domain prediction
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LotjaGi1g1v0187400.2
n.a. Nodulin / Major Facilitator Superfamily protein; TAIR: AT1G74780.1 Nodulin-like / Major Facilitator Superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A151S7C4|A0A151S7C4_CAJCA Putative transporter MCH1; Found in the gene: LotjaGi1g1v0187400 LjG1.1_chr1 36707045 36710404 -
1 domain prediction
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LotjaGi1g1v0187600.1
n.a. Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT1G74780.1 Nodulin-like / Major Facilitator Superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|I1JWZ9|I1JWZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0187600 LjG1.1_chr1 36737626 36745722 -
1 domain prediction
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LotjaGi1g1v0187600.2
n.a. Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT1G74780.1 Nodulin-like / Major Facilitator Superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|I1KCN7|I1KCN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0187600 LjG1.1_chr1 36742604 36744351 -
1 domain prediction
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LotjaGi1g1v0338200.1
n.a. Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT5G14120.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A0L9UCX5|A0A0L9UCX5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0338200 LjG1.1_chr1 79864558 79868067 +
1 domain prediction
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LotjaGi1g1v0338200.2
n.a. Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT3G01930.2 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A0L9UCX5|A0A0L9UCX5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0338200 LjG1.1_chr1 79864558 79868067 +
1 domain prediction
 –